Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT5G09995

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:1903224: regulation of endodermal cell differentiation0.00E+00
2GO:0007638: mechanosensory behavior0.00E+00
3GO:0002949: tRNA threonylcarbamoyladenosine modification0.00E+00
4GO:1905177: tracheary element differentiation0.00E+00
5GO:0002103: endonucleolytic cleavage of tetracistronic rRNA transcript (SSU-rRNA, LSU-rRNA, 4.5S-rRNA, 5S-rRNA)0.00E+00
6GO:0045184: establishment of protein localization0.00E+00
7GO:0031222: arabinan catabolic process0.00E+00
8GO:0006429: leucyl-tRNA aminoacylation0.00E+00
9GO:1905421: regulation of plant organ morphogenesis0.00E+00
10GO:0010059: positive regulation of atrichoblast fate specification0.00E+00
11GO:0030155: regulation of cell adhesion0.00E+00
12GO:0032194: ubiquinone biosynthetic process via 3,4-dihydroxy-5-polyprenylbenzoate0.00E+00
13GO:0090627: plant epidermal cell differentiation0.00E+00
14GO:0090071: negative regulation of ribosome biogenesis0.00E+00
15GO:0009606: tropism0.00E+00
16GO:0019294: keto-3-deoxy-D-manno-octulosonic acid biosynthetic process0.00E+00
17GO:0009734: auxin-activated signaling pathway6.68E-09
18GO:0046620: regulation of organ growth1.87E-08
19GO:0040008: regulation of growth1.99E-07
20GO:0009733: response to auxin1.01E-06
21GO:0042793: transcription from plastid promoter1.65E-05
22GO:0009451: RNA modification2.40E-05
23GO:1901259: chloroplast rRNA processing2.76E-05
24GO:0009926: auxin polar transport4.05E-05
25GO:0009657: plastid organization8.56E-05
26GO:0046739: transport of virus in multicellular host1.40E-04
27GO:0016556: mRNA modification1.40E-04
28GO:0010239: chloroplast mRNA processing1.40E-04
29GO:0010306: rhamnogalacturonan II biosynthetic process1.40E-04
30GO:0009658: chloroplast organization4.16E-04
31GO:0009913: epidermal cell differentiation4.97E-04
32GO:0006418: tRNA aminoacylation for protein translation6.91E-04
33GO:0072684: mitochondrial tRNA 3'-trailer cleavage, endonucleolytic6.97E-04
34GO:0090558: plant epidermis development6.97E-04
35GO:0010063: positive regulation of trichoblast fate specification6.97E-04
36GO:0010480: microsporocyte differentiation6.97E-04
37GO:0042371: vitamin K biosynthetic process6.97E-04
38GO:0035987: endodermal cell differentiation6.97E-04
39GO:0006436: tryptophanyl-tRNA aminoacylation6.97E-04
40GO:0034080: CENP-A containing nucleosome assembly6.97E-04
41GO:0010729: positive regulation of hydrogen peroxide biosynthetic process6.97E-04
42GO:0051418: microtubule nucleation by microtubule organizing center6.97E-04
43GO:0042659: regulation of cell fate specification6.97E-04
44GO:0046901: tetrahydrofolylpolyglutamate biosynthetic process6.97E-04
45GO:0070509: calcium ion import6.97E-04
46GO:0048437: floral organ development8.40E-04
47GO:0010103: stomatal complex morphogenesis8.40E-04
48GO:0010497: plasmodesmata-mediated intercellular transport1.27E-03
49GO:0007389: pattern specification process1.27E-03
50GO:0048868: pollen tube development1.46E-03
51GO:1902326: positive regulation of chlorophyll biosynthetic process1.50E-03
52GO:0018026: peptidyl-lysine monomethylation1.50E-03
53GO:2000039: regulation of trichome morphogenesis1.50E-03
54GO:0009662: etioplast organization1.50E-03
55GO:1900033: negative regulation of trichome patterning1.50E-03
56GO:0009220: pyrimidine ribonucleotide biosynthetic process1.50E-03
57GO:1904143: positive regulation of carotenoid biosynthetic process1.50E-03
58GO:0080009: mRNA methylation1.50E-03
59GO:2000123: positive regulation of stomatal complex development1.50E-03
60GO:0033566: gamma-tubulin complex localization1.50E-03
61GO:1900871: chloroplast mRNA modification1.50E-03
62GO:0060359: response to ammonium ion1.50E-03
63GO:0000373: Group II intron splicing1.52E-03
64GO:0000902: cell morphogenesis1.52E-03
65GO:0007275: multicellular organism development1.73E-03
66GO:1900865: chloroplast RNA modification1.80E-03
67GO:0031425: chloroplast RNA processing1.80E-03
68GO:0009416: response to light stimulus1.92E-03
69GO:0005975: carbohydrate metabolic process1.94E-03
70GO:0010583: response to cyclopentenone2.09E-03
71GO:0009664: plant-type cell wall organization2.30E-03
72GO:0010252: auxin homeostasis2.46E-03
73GO:0009828: plant-type cell wall loosening2.46E-03
74GO:0010623: programmed cell death involved in cell development2.48E-03
75GO:0042780: tRNA 3'-end processing2.48E-03
76GO:0001578: microtubule bundle formation2.48E-03
77GO:0043157: response to cation stress2.48E-03
78GO:0005977: glycogen metabolic process2.48E-03
79GO:0007052: mitotic spindle organization2.48E-03
80GO:0034414: tRNA 3'-trailer cleavage, endonucleolytic2.48E-03
81GO:0045910: negative regulation of DNA recombination2.48E-03
82GO:0048281: inflorescence morphogenesis2.48E-03
83GO:0090708: specification of plant organ axis polarity2.48E-03
84GO:0006954: inflammatory response2.48E-03
85GO:0006518: peptide metabolic process2.48E-03
86GO:0045037: protein import into chloroplast stroma2.80E-03
87GO:0006508: proteolysis3.08E-03
88GO:0010207: photosystem II assembly3.60E-03
89GO:0090307: mitotic spindle assembly3.61E-03
90GO:2000904: regulation of starch metabolic process3.61E-03
91GO:0051289: protein homotetramerization3.61E-03
92GO:0031048: chromatin silencing by small RNA3.61E-03
93GO:0010148: transpiration3.61E-03
94GO:0051415: interphase microtubule nucleation by interphase microtubule organizing center3.61E-03
95GO:0034508: centromere complex assembly3.61E-03
96GO:1902476: chloride transmembrane transport3.61E-03
97GO:0010071: root meristem specification3.61E-03
98GO:0051513: regulation of monopolar cell growth3.61E-03
99GO:0007231: osmosensory signaling pathway3.61E-03
100GO:0044211: CTP salvage3.61E-03
101GO:0019048: modulation by virus of host morphology or physiology3.61E-03
102GO:0070588: calcium ion transmembrane transport4.04E-03
103GO:0048481: plant ovule development4.35E-03
104GO:0006221: pyrimidine nucleotide biosynthetic process4.87E-03
105GO:0044205: 'de novo' UMP biosynthetic process4.87E-03
106GO:0051567: histone H3-K9 methylation4.87E-03
107GO:0010508: positive regulation of autophagy4.87E-03
108GO:0044206: UMP salvage4.87E-03
109GO:0010021: amylopectin biosynthetic process4.87E-03
110GO:0006808: regulation of nitrogen utilization4.87E-03
111GO:0006479: protein methylation4.87E-03
112GO:0048629: trichome patterning4.87E-03
113GO:0042274: ribosomal small subunit biogenesis4.87E-03
114GO:0051322: anaphase4.87E-03
115GO:0030104: water homeostasis4.87E-03
116GO:0033500: carbohydrate homeostasis4.87E-03
117GO:2000038: regulation of stomatal complex development4.87E-03
118GO:0051302: regulation of cell division5.54E-03
119GO:0032543: mitochondrial translation6.27E-03
120GO:0010236: plastoquinone biosynthetic process6.27E-03
121GO:0048497: maintenance of floral organ identity6.27E-03
122GO:0009107: lipoate biosynthetic process6.27E-03
123GO:0016123: xanthophyll biosynthetic process6.27E-03
124GO:0010158: abaxial cell fate specification6.27E-03
125GO:0010375: stomatal complex patterning6.27E-03
126GO:0006730: one-carbon metabolic process6.68E-03
127GO:0009831: plant-type cell wall modification involved in multidimensional cell growth7.30E-03
128GO:0010082: regulation of root meristem growth7.30E-03
129GO:0010315: auxin efflux7.79E-03
130GO:0006206: pyrimidine nucleobase metabolic process7.79E-03
131GO:0016458: gene silencing7.79E-03
132GO:0018258: protein O-linked glycosylation via hydroxyproline7.79E-03
133GO:0050665: hydrogen peroxide biosynthetic process7.79E-03
134GO:0010405: arabinogalactan protein metabolic process7.79E-03
135GO:0009959: negative gravitropism7.79E-03
136GO:0006655: phosphatidylglycerol biosynthetic process7.79E-03
137GO:0016554: cytidine to uridine editing7.79E-03
138GO:0009790: embryo development7.88E-03
139GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway8.77E-03
140GO:0000226: microtubule cytoskeleton organization9.33E-03
141GO:0017148: negative regulation of translation9.42E-03
142GO:0042026: protein refolding9.42E-03
143GO:0009942: longitudinal axis specification9.42E-03
144GO:0009099: valine biosynthetic process9.42E-03
145GO:0030488: tRNA methylation9.42E-03
146GO:0009854: oxidative photosynthetic carbon pathway9.42E-03
147GO:0080086: stamen filament development9.42E-03
148GO:2000067: regulation of root morphogenesis9.42E-03
149GO:0042372: phylloquinone biosynthetic process9.42E-03
150GO:0009082: branched-chain amino acid biosynthetic process9.42E-03
151GO:0006458: 'de novo' protein folding9.42E-03
152GO:0009741: response to brassinosteroid1.01E-02
153GO:0048544: recognition of pollen1.08E-02
154GO:0010050: vegetative phase change1.12E-02
155GO:0010444: guard mother cell differentiation1.12E-02
156GO:0030307: positive regulation of cell growth1.12E-02
157GO:0006207: 'de novo' pyrimidine nucleobase biosynthetic process1.12E-02
158GO:0048528: post-embryonic root development1.12E-02
159GO:0009772: photosynthetic electron transport in photosystem II1.12E-02
160GO:0006821: chloride transport1.12E-02
161GO:0070370: cellular heat acclimation1.12E-02
162GO:0048825: cotyledon development1.16E-02
163GO:0051603: proteolysis involved in cellular protein catabolic process1.25E-02
164GO:0009850: auxin metabolic process1.30E-02
165GO:0006353: DNA-templated transcription, termination1.30E-02
166GO:0048766: root hair initiation1.30E-02
167GO:0070413: trehalose metabolism in response to stress1.30E-02
168GO:0055075: potassium ion homeostasis1.30E-02
169GO:0048564: photosystem I assembly1.30E-02
170GO:0001522: pseudouridine synthesis1.30E-02
171GO:0032502: developmental process1.33E-02
172GO:0009630: gravitropism1.33E-02
173GO:0009097: isoleucine biosynthetic process1.50E-02
174GO:0010204: defense response signaling pathway, resistance gene-independent1.50E-02
175GO:0001558: regulation of cell growth1.50E-02
176GO:0009827: plant-type cell wall modification1.50E-02
177GO:0006098: pentose-phosphate shunt1.70E-02
178GO:0009553: embryo sac development1.81E-02
179GO:0010027: thylakoid membrane organization1.81E-02
180GO:0009826: unidimensional cell growth1.86E-02
181GO:0009862: systemic acquired resistance, salicylic acid mediated signaling pathway1.92E-02
182GO:0009638: phototropism1.92E-02
183GO:2000280: regulation of root development1.92E-02
184GO:0009742: brassinosteroid mediated signaling pathway2.02E-02
185GO:0042254: ribosome biogenesis2.03E-02
186GO:0006535: cysteine biosynthetic process from serine2.14E-02
187GO:0030422: production of siRNA involved in RNA interference2.14E-02
188GO:0045036: protein targeting to chloroplast2.14E-02
189GO:0009641: shade avoidance2.14E-02
190GO:0006298: mismatch repair2.14E-02
191GO:0006949: syncytium formation2.14E-02
192GO:0006259: DNA metabolic process2.14E-02
193GO:0010411: xyloglucan metabolic process2.14E-02
194GO:0048229: gametophyte development2.38E-02
195GO:0010015: root morphogenesis2.38E-02
196GO:0006265: DNA topological change2.38E-02
197GO:0009089: lysine biosynthetic process via diaminopimelate2.38E-02
198GO:0006816: calcium ion transport2.38E-02
199GO:0009073: aromatic amino acid family biosynthetic process2.38E-02
200GO:0071555: cell wall organization2.52E-02
201GO:0016024: CDP-diacylglycerol biosynthetic process2.62E-02
202GO:0010582: floral meristem determinacy2.62E-02
203GO:0009785: blue light signaling pathway2.87E-02
204GO:0009691: cytokinin biosynthetic process2.87E-02
205GO:0050826: response to freezing2.87E-02
206GO:0010075: regulation of meristem growth2.87E-02
207GO:0006094: gluconeogenesis2.87E-02
208GO:0009767: photosynthetic electron transport chain2.87E-02
209GO:2000012: regulation of auxin polar transport2.87E-02
210GO:0009934: regulation of meristem structural organization3.13E-02
211GO:0009793: embryo development ending in seed dormancy3.15E-02
212GO:0006839: mitochondrial transport3.43E-02
213GO:0006833: water transport3.67E-02
214GO:0007623: circadian rhythm3.73E-02
215GO:0030150: protein import into mitochondrial matrix3.95E-02
216GO:0005992: trehalose biosynthetic process3.95E-02
217GO:0019344: cysteine biosynthetic process3.95E-02
218GO:0009116: nucleoside metabolic process3.95E-02
219GO:0009944: polarity specification of adaxial/abaxial axis3.95E-02
220GO:0080147: root hair cell development3.95E-02
221GO:0042546: cell wall biogenesis4.03E-02
222GO:0010073: meristem maintenance4.23E-02
223GO:0006825: copper ion transport4.23E-02
224GO:0019953: sexual reproduction4.23E-02
225GO:0006306: DNA methylation4.53E-02
226GO:0016998: cell wall macromolecule catabolic process4.53E-02
227GO:0015992: proton transport4.53E-02
228GO:0061077: chaperone-mediated protein folding4.53E-02
229GO:0031348: negative regulation of defense response4.83E-02
230GO:0019748: secondary metabolic process4.83E-02
231GO:0016226: iron-sulfur cluster assembly4.83E-02
RankGO TermAdjusted P value
1GO:0061711: N(6)-L-threonylcarbamoyladenine synthase0.00E+00
2GO:0046428: 1,4-dihydroxy-2-naphthoate octaprenyltransferase activity0.00E+00
3GO:0004823: leucine-tRNA ligase activity0.00E+00
4GO:0004056: argininosuccinate lyase activity0.00E+00
5GO:0015267: channel activity0.00E+00
6GO:0070009: serine-type aminopeptidase activity0.00E+00
7GO:0004588: orotate phosphoribosyltransferase activity0.00E+00
8GO:0004590: orotidine-5'-phosphate decarboxylase activity0.00E+00
9GO:0008676: 3-deoxy-8-phosphooctulonate synthase activity0.00E+00
10GO:0004519: endonuclease activity8.11E-07
11GO:0017150: tRNA dihydrouridine synthase activity6.75E-05
12GO:0001872: (1->3)-beta-D-glucan binding1.40E-04
13GO:0003723: RNA binding5.17E-04
14GO:0016422: mRNA (2'-O-methyladenosine-N6-)-methyltransferase activity6.97E-04
15GO:0052906: tRNA (guanine(37)-N(1))-methyltransferase activity6.97E-04
16GO:0004008: copper-exporting ATPase activity6.97E-04
17GO:0033946: xyloglucan-specific endo-beta-1,4-glucanase activity6.97E-04
18GO:0004830: tryptophan-tRNA ligase activity6.97E-04
19GO:0052381: tRNA dimethylallyltransferase activity6.97E-04
20GO:0010285: L,L-diaminopimelate aminotransferase activity6.97E-04
21GO:0004160: dihydroxy-acid dehydratase activity6.97E-04
22GO:0051777: ent-kaurenoate oxidase activity6.97E-04
23GO:0016274: protein-arginine N-methyltransferase activity6.97E-04
24GO:0004222: metalloendopeptidase activity8.88E-04
25GO:0004812: aminoacyl-tRNA ligase activity1.20E-03
26GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds1.32E-03
27GO:0008805: carbon-monoxide oxygenase activity1.50E-03
28GO:0015929: hexosaminidase activity1.50E-03
29GO:0004563: beta-N-acetylhexosaminidase activity1.50E-03
30GO:0000179: rRNA (adenine-N6,N6-)-dimethyltransferase activity1.50E-03
31GO:0017118: lipoyltransferase activity1.50E-03
32GO:0004326: tetrahydrofolylpolyglutamate synthase activity1.50E-03
33GO:0016415: octanoyltransferase activity1.50E-03
34GO:0004047: aminomethyltransferase activity1.50E-03
35GO:0000095: S-adenosyl-L-methionine transmembrane transporter activity1.50E-03
36GO:0019156: isoamylase activity1.50E-03
37GO:0009672: auxin:proton symporter activity1.80E-03
38GO:0002161: aminoacyl-tRNA editing activity2.48E-03
39GO:0042781: 3'-tRNA processing endoribonuclease activity2.48E-03
40GO:0016805: dipeptidase activity2.48E-03
41GO:0070330: aromatase activity2.48E-03
42GO:0010329: auxin efflux transmembrane transporter activity3.19E-03
43GO:0005262: calcium channel activity3.19E-03
44GO:0042973: glucan endo-1,3-beta-D-glucosidase activity3.60E-03
45GO:0009041: uridylate kinase activity3.61E-03
46GO:0052852: very-long-chain-(S)-2-hydroxy-acid oxidase activity3.61E-03
47GO:0035197: siRNA binding3.61E-03
48GO:0043023: ribosomal large subunit binding3.61E-03
49GO:0052853: long-chain-(S)-2-hydroxy-long-chain-acid oxidase activity3.61E-03
50GO:0052854: medium-chain-(S)-2-hydroxy-acid oxidase activity3.61E-03
51GO:0009678: hydrogen-translocating pyrophosphatase activity3.61E-03
52GO:0004650: polygalacturonase activity3.83E-03
53GO:0005253: anion channel activity4.87E-03
54GO:0019199: transmembrane receptor protein kinase activity4.87E-03
55GO:0042277: peptide binding4.87E-03
56GO:0008891: glycolate oxidase activity4.87E-03
57GO:0004930: G-protein coupled receptor activity4.87E-03
58GO:0046556: alpha-L-arabinofuranosidase activity4.87E-03
59GO:0004659: prenyltransferase activity4.87E-03
60GO:0016279: protein-lysine N-methyltransferase activity4.87E-03
61GO:0004845: uracil phosphoribosyltransferase activity4.87E-03
62GO:0016836: hydro-lyase activity4.87E-03
63GO:0043015: gamma-tubulin binding4.87E-03
64GO:0004176: ATP-dependent peptidase activity6.10E-03
65GO:0019843: rRNA binding6.22E-03
66GO:0018685: alkane 1-monooxygenase activity6.27E-03
67GO:0016773: phosphotransferase activity, alcohol group as acceptor6.27E-03
68GO:0070696: transmembrane receptor protein serine/threonine kinase binding6.27E-03
69GO:0004888: transmembrane signaling receptor activity6.27E-03
70GO:0005247: voltage-gated chloride channel activity7.79E-03
71GO:0030983: mismatched DNA binding7.79E-03
72GO:0004605: phosphatidate cytidylyltransferase activity7.79E-03
73GO:0080030: methyl indole-3-acetate esterase activity7.79E-03
74GO:1990714: hydroxyproline O-galactosyltransferase activity7.79E-03
75GO:0004332: fructose-bisphosphate aldolase activity7.79E-03
76GO:0004556: alpha-amylase activity7.79E-03
77GO:0004185: serine-type carboxypeptidase activity8.17E-03
78GO:0004656: procollagen-proline 4-dioxygenase activity9.42E-03
79GO:0004124: cysteine synthase activity9.42E-03
80GO:0008195: phosphatidate phosphatase activity9.42E-03
81GO:0004849: uridine kinase activity9.42E-03
82GO:0004427: inorganic diphosphatase activity1.12E-02
83GO:0016762: xyloglucan:xyloglucosyl transferase activity1.25E-02
84GO:0043022: ribosome binding1.30E-02
85GO:0008173: RNA methyltransferase activity1.50E-02
86GO:0003918: DNA topoisomerase type II (ATP-hydrolyzing) activity1.50E-02
87GO:0005375: copper ion transmembrane transporter activity1.50E-02
88GO:0003684: damaged DNA binding1.52E-02
89GO:0008237: metallopeptidase activity1.61E-02
90GO:0008026: ATP-dependent helicase activity2.02E-02
91GO:0016788: hydrolase activity, acting on ester bonds2.03E-02
92GO:0004805: trehalose-phosphatase activity2.14E-02
93GO:0030247: polysaccharide binding2.14E-02
94GO:0016798: hydrolase activity, acting on glycosyl bonds2.14E-02
95GO:0003735: structural constituent of ribosome2.21E-02
96GO:0044183: protein binding involved in protein folding2.38E-02
97GO:0004521: endoribonuclease activity2.62E-02
98GO:0016829: lyase activity2.75E-02
99GO:0004022: alcohol dehydrogenase (NAD) activity2.87E-02
100GO:0004565: beta-galactosidase activity2.87E-02
101GO:0015266: protein channel activity2.87E-02
102GO:0015662: ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism2.87E-02
103GO:0004089: carbonate dehydratase activity2.87E-02
104GO:0031072: heat shock protein binding2.87E-02
105GO:0009982: pseudouridine synthase activity2.87E-02
106GO:0016706: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors3.01E-02
107GO:0051539: 4 iron, 4 sulfur cluster binding3.43E-02
108GO:0001135: transcription factor activity, RNA polymerase II transcription factor recruiting3.53E-02
109GO:0003887: DNA-directed DNA polymerase activity3.67E-02
110GO:0031418: L-ascorbic acid binding3.95E-02
111GO:0000981: RNA polymerase II transcription factor activity, sequence-specific DNA binding4.12E-02
112GO:0033612: receptor serine/threonine kinase binding4.53E-02
113GO:0008408: 3'-5' exonuclease activity4.53E-02
114GO:0035251: UDP-glucosyltransferase activity4.53E-02
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Gene type



Gene DE type