co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT5G09730

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0032194: ubiquinone biosynthetic process via 3,4-dihydroxy-5-polyprenylbenzoate	0.00E+00
2	GO:0009606: tropism	0.00E+00
3	GO:1903224: regulation of endodermal cell differentiation	0.00E+00
4	GO:0007638: mechanosensory behavior	0.00E+00
5	GO:0035884: arabinan biosynthetic process	0.00E+00
6	GO:0006003: fructose 2,6-bisphosphate metabolic process	0.00E+00
7	GO:0002103: endonucleolytic cleavage of tetracistronic rRNA transcript (SSU-rRNA, LSU-rRNA, 4.5S-rRNA, 5S-rRNA)	0.00E+00
8	GO:0097164: ammonium ion metabolic process	0.00E+00
9	GO:0045184: establishment of protein localization	0.00E+00
10	GO:0015843: methylammonium transport	0.00E+00
11	GO:0070979: protein K11-linked ubiquitination	0.00E+00
12	GO:0009734: auxin-activated signaling pathway	3.02E-09
13	GO:0046620: regulation of organ growth	3.22E-08
14	GO:0009733: response to auxin	7.04E-07
15	GO:0042793: transcription from plastid promoter	2.29E-05
16	GO:0010569: regulation of double-strand break repair via homologous recombination	2.65E-05
17	GO:0040008: regulation of growth	3.67E-05
18	GO:0009926: auxin polar transport	6.73E-05
19	GO:0009657: plastid organization	1.14E-04
20	GO:0046739: transport of virus in multicellular host	1.74E-04
21	GO:0051513: regulation of monopolar cell growth	1.74E-04
22	GO:2000038: regulation of stomatal complex development	2.92E-04
23	GO:0046656: folic acid biosynthetic process	2.92E-04
24	GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway	3.20E-04
25	GO:0032876: negative regulation of DNA endoreduplication	4.34E-04
26	GO:0009658: chloroplast organization	6.54E-04
27	GO:0019294: keto-3-deoxy-D-manno-octulosonic acid biosynthetic process	7.94E-04
28	GO:0070509: calcium ion import	7.94E-04
29	GO:1901537: positive regulation of DNA demethylation	7.94E-04
30	GO:0090558: plant epidermis development	7.94E-04
31	GO:0010480: microsporocyte differentiation	7.94E-04
32	GO:0042371: vitamin K biosynthetic process	7.94E-04
33	GO:0035987: endodermal cell differentiation	7.94E-04
34	GO:0043609: regulation of carbon utilization	7.94E-04
35	GO:0006436: tryptophanyl-tRNA aminoacylation	7.94E-04
36	GO:0000066: mitochondrial ornithine transport	7.94E-04
37	GO:0015904: tetracycline transport	7.94E-04
38	GO:0034757: negative regulation of iron ion transport	7.94E-04
39	GO:0042659: regulation of cell fate specification	7.94E-04
40	GO:0046654: tetrahydrofolate biosynthetic process	7.96E-04
41	GO:0000160: phosphorelay signal transduction system	1.11E-03
42	GO:0010497: plasmodesmata-mediated intercellular transport	1.54E-03
43	GO:0007389: pattern specification process	1.54E-03
44	GO:0070981: L-asparagine biosynthetic process	1.72E-03
45	GO:0010271: regulation of chlorophyll catabolic process	1.72E-03
46	GO:1902326: positive regulation of chlorophyll biosynthetic process	1.72E-03
47	GO:0018026: peptidyl-lysine monomethylation	1.72E-03
48	GO:0071497: cellular response to freezing	1.72E-03
49	GO:2000039: regulation of trichome morphogenesis	1.72E-03
50	GO:0009662: etioplast organization	1.72E-03
51	GO:1900033: negative regulation of trichome patterning	1.72E-03
52	GO:1904143: positive regulation of carotenoid biosynthetic process	1.72E-03
53	GO:0080009: mRNA methylation	1.72E-03
54	GO:0009786: regulation of asymmetric cell division	1.72E-03
55	GO:0006529: asparagine biosynthetic process	1.72E-03
56	GO:2000123: positive regulation of stomatal complex development	1.72E-03
57	GO:0000373: Group II intron splicing	1.85E-03
58	GO:1900865: chloroplast RNA modification	2.19E-03
59	GO:0006949: syncytium formation	2.57E-03
60	GO:0080117: secondary growth	2.84E-03
61	GO:0006000: fructose metabolic process	2.84E-03
62	GO:0031145: anaphase-promoting complex-dependent catabolic process	2.84E-03
63	GO:0001578: microtubule bundle formation	2.84E-03
64	GO:0006760: folic acid-containing compound metabolic process	2.84E-03
65	GO:0090708: specification of plant organ axis polarity	2.84E-03
66	GO:0009416: response to light stimulus	3.11E-03
67	GO:0010252: auxin homeostasis	3.17E-03
68	GO:0009828: plant-type cell wall loosening	3.17E-03
69	GO:0007275: multicellular organism development	3.24E-03
70	GO:0030154: cell differentiation	3.34E-03
71	GO:0045037: protein import into chloroplast stroma	3.41E-03
72	GO:0009736: cytokinin-activated signaling pathway	3.47E-03
73	GO:2000012: regulation of auxin polar transport	3.89E-03
74	GO:0009767: photosynthetic electron transport chain	3.89E-03
75	GO:0010306: rhamnogalacturonan II biosynthetic process	4.14E-03
76	GO:0044211: CTP salvage	4.14E-03
77	GO:0019048: modulation by virus of host morphology or physiology	4.14E-03
78	GO:0015696: ammonium transport	4.14E-03
79	GO:0032981: mitochondrial respiratory chain complex I assembly	4.14E-03
80	GO:2000904: regulation of starch metabolic process	4.14E-03
81	GO:0051289: protein homotetramerization	4.14E-03
82	GO:0031048: chromatin silencing by small RNA	4.14E-03
83	GO:0043572: plastid fission	4.14E-03
84	GO:1902476: chloride transmembrane transport	4.14E-03
85	GO:0007231: osmosensory signaling pathway	4.14E-03
86	GO:0030071: regulation of mitotic metaphase/anaphase transition	4.14E-03
87	GO:0051639: actin filament network formation	4.14E-03
88	GO:0010239: chloroplast mRNA processing	4.14E-03
89	GO:0009800: cinnamic acid biosynthetic process	4.14E-03
90	GO:0009739: response to gibberellin	4.54E-03
91	GO:0006357: regulation of transcription from RNA polymerase II promoter	4.60E-03
92	GO:0070588: calcium ion transmembrane transport	4.93E-03
93	GO:0030104: water homeostasis	5.60E-03
94	GO:0033500: carbohydrate homeostasis	5.60E-03
95	GO:0072488: ammonium transmembrane transport	5.60E-03
96	GO:0022622: root system development	5.60E-03
97	GO:0051567: histone H3-K9 methylation	5.60E-03
98	GO:0044206: UMP salvage	5.60E-03
99	GO:1901141: regulation of lignin biosynthetic process	5.60E-03
100	GO:0048629: trichome patterning	5.60E-03
101	GO:0051764: actin crosslink formation	5.60E-03
102	GO:0051322: anaphase	5.60E-03
103	GO:0005992: trehalose biosynthetic process	6.12E-03
104	GO:0071555: cell wall organization	6.64E-03
105	GO:0030308: negative regulation of cell growth	7.21E-03
106	GO:0010375: stomatal complex patterning	7.21E-03
107	GO:0010236: plastoquinone biosynthetic process	7.21E-03
108	GO:0009107: lipoate biosynthetic process	7.21E-03
109	GO:1902183: regulation of shoot apical meristem development	7.21E-03
110	GO:0016123: xanthophyll biosynthetic process	7.21E-03
111	GO:0010438: cellular response to sulfur starvation	7.21E-03
112	GO:0010158: abaxial cell fate specification	7.21E-03
113	GO:0006306: DNA methylation	7.45E-03
114	GO:0016998: cell wall macromolecule catabolic process	7.45E-03
115	GO:0005975: carbohydrate metabolic process	8.20E-03
116	GO:0009831: plant-type cell wall modification involved in multidimensional cell growth	8.93E-03
117	GO:0010082: regulation of root meristem growth	8.93E-03
118	GO:0048831: regulation of shoot system development	8.96E-03
119	GO:0016554: cytidine to uridine editing	8.96E-03
120	GO:0010315: auxin efflux	8.96E-03
121	GO:0006559: L-phenylalanine catabolic process	8.96E-03
122	GO:0016458: gene silencing	8.96E-03
123	GO:0006206: pyrimidine nucleobase metabolic process	8.96E-03
124	GO:0018258: protein O-linked glycosylation via hydroxyproline	8.96E-03
125	GO:0010405: arabinogalactan protein metabolic process	8.96E-03
126	GO:0006655: phosphatidylglycerol biosynthetic process	8.96E-03
127	GO:0006839: mitochondrial transport	8.99E-03
128	GO:0042372: phylloquinone biosynthetic process	1.09E-02
129	GO:0010067: procambium histogenesis	1.09E-02
130	GO:0009942: longitudinal axis specification	1.09E-02
131	GO:0048509: regulation of meristem development	1.09E-02
132	GO:0030488: tRNA methylation	1.09E-02
133	GO:1901259: chloroplast rRNA processing	1.09E-02
134	GO:2000037: regulation of stomatal complex patterning	1.09E-02
135	GO:2000067: regulation of root morphogenesis	1.09E-02
136	GO:0071470: cellular response to osmotic stress	1.09E-02
137	GO:0010087: phloem or xylem histogenesis	1.14E-02
138	GO:0006342: chromatin silencing	1.23E-02
139	GO:0009741: response to brassinosteroid	1.23E-02
140	GO:0009958: positive gravitropism	1.23E-02
141	GO:0006821: chloride transport	1.29E-02
142	GO:0010050: vegetative phase change	1.29E-02
143	GO:0048437: floral organ development	1.29E-02
144	GO:0030307: positive regulation of cell growth	1.29E-02
145	GO:0009396: folic acid-containing compound biosynthetic process	1.29E-02
146	GO:0010103: stomatal complex morphogenesis	1.29E-02
147	GO:0032880: regulation of protein localization	1.29E-02
148	GO:0009610: response to symbiotic fungus	1.29E-02
149	GO:0006955: immune response	1.29E-02
150	GO:0048528: post-embryonic root development	1.29E-02
151	GO:0007050: cell cycle arrest	1.29E-02
152	GO:0009772: photosynthetic electron transport in photosystem II	1.29E-02
153	GO:0048544: recognition of pollen	1.33E-02
154	GO:0009646: response to absence of light	1.33E-02
155	GO:0009664: plant-type cell wall organization	1.41E-02
156	GO:0009451: RNA modification	1.43E-02
157	GO:0010439: regulation of glucosinolate biosynthetic process	1.50E-02
158	GO:0001522: pseudouridine synthesis	1.50E-02
159	GO:0009850: auxin metabolic process	1.50E-02
160	GO:0009787: regulation of abscisic acid-activated signaling pathway	1.50E-02
161	GO:0032875: regulation of DNA endoreduplication	1.50E-02
162	GO:0048766: root hair initiation	1.50E-02
163	GO:0055075: potassium ion homeostasis	1.50E-02
164	GO:0000105: histidine biosynthetic process	1.50E-02
165	GO:0080156: mitochondrial mRNA modification	1.53E-02
166	GO:0010583: response to cyclopentenone	1.63E-02
167	GO:0009827: plant-type cell wall modification	1.73E-02
168	GO:0006002: fructose 6-phosphate metabolic process	1.73E-02
169	GO:0009051: pentose-phosphate shunt, oxidative branch	1.97E-02
170	GO:2000024: regulation of leaf development	1.97E-02
171	GO:0000902: cell morphogenesis	1.97E-02
172	GO:0051607: defense response to virus	2.10E-02
173	GO:2000280: regulation of root development	2.22E-02
174	GO:0010027: thylakoid membrane organization	2.22E-02
175	GO:0031425: chloroplast RNA processing	2.22E-02
176	GO:0009638: phototropism	2.22E-02
177	GO:0042761: very long-chain fatty acid biosynthetic process	2.22E-02
178	GO:0006535: cysteine biosynthetic process from serine	2.48E-02
179	GO:0030422: production of siRNA involved in RNA interference	2.48E-02
180	GO:0048829: root cap development	2.48E-02
181	GO:0045036: protein targeting to chloroplast	2.48E-02
182	GO:0006259: DNA metabolic process	2.48E-02
183	GO:0009826: unidimensional cell growth	2.51E-02
184	GO:0009742: brassinosteroid mediated signaling pathway	2.60E-02
185	GO:0010411: xyloglucan metabolic process	2.62E-02
186	GO:0006816: calcium ion transport	2.75E-02
187	GO:0006265: DNA topological change	2.75E-02
188	GO:0009773: photosynthetic electron transport in photosystem I	2.75E-02
189	GO:0009682: induced systemic resistance	2.75E-02
190	GO:0048229: gametophyte development	2.75E-02
191	GO:0010015: root morphogenesis	2.75E-02
192	GO:0048481: plant ovule development	2.90E-02
193	GO:0006468: protein phosphorylation	2.94E-02
194	GO:0016024: CDP-diacylglycerol biosynthetic process	3.02E-02
195	GO:0010582: floral meristem determinacy	3.02E-02
196	GO:0008361: regulation of cell size	3.02E-02
197	GO:0010311: lateral root formation	3.05E-02
198	GO:0010628: positive regulation of gene expression	3.31E-02
199	GO:0006006: glucose metabolic process	3.31E-02
200	GO:0009785: blue light signaling pathway	3.31E-02
201	GO:0009691: cytokinin biosynthetic process	3.31E-02
202	GO:0010075: regulation of meristem growth	3.31E-02
203	GO:0010207: photosystem II assembly	3.61E-02
204	GO:0006541: glutamine metabolic process	3.61E-02
205	GO:0010020: chloroplast fission	3.61E-02
206	GO:0010223: secondary shoot formation	3.61E-02
207	GO:0009934: regulation of meristem structural organization	3.61E-02
208	GO:0080167: response to karrikin	3.64E-02
209	GO:0034599: cellular response to oxidative stress	3.84E-02
210	GO:0080188: RNA-directed DNA methylation	3.92E-02
211	GO:0090351: seedling development	3.92E-02
212	GO:0006863: purine nucleobase transport	4.23E-02
213	GO:0006071: glycerol metabolic process	4.23E-02
214	GO:0006833: water transport	4.23E-02
215	GO:0009944: polarity specification of adaxial/abaxial axis	4.55E-02
216	GO:0080147: root hair cell development	4.55E-02
217	GO:0051017: actin filament bundle assembly	4.55E-02
218	GO:0030150: protein import into mitochondrial matrix	4.55E-02
219	GO:0019344: cysteine biosynthetic process	4.55E-02
220	GO:0010114: response to red light	4.73E-02
221	GO:0007623: circadian rhythm	4.77E-02
222	GO:0006418: tRNA aminoacylation for protein translation	4.88E-02
223	GO:0010073: meristem maintenance	4.88E-02
224	GO:0006825: copper ion transport	4.88E-02
225	GO:0051302: regulation of cell division	4.88E-02
226	GO:0042546: cell wall biogenesis	4.91E-02

Rank	GO Term	Adjusted P value
1	GO:0004331: fructose-2,6-bisphosphate 2-phosphatase activity	0.00E+00
2	GO:0003873: 6-phosphofructo-2-kinase activity	0.00E+00
3	GO:0046428: 1,4-dihydroxy-2-naphthoate octaprenyltransferase activity	0.00E+00
4	GO:0004056: argininosuccinate lyase activity	0.00E+00
5	GO:0070009: serine-type aminopeptidase activity	0.00E+00
6	GO:0000095: S-adenosyl-L-methionine transmembrane transporter activity	2.65E-05
7	GO:0001872: (1->3)-beta-D-glucan binding	1.74E-04
8	GO:0051777: ent-kaurenoate oxidase activity	7.94E-04
9	GO:0042834: peptidoglycan binding	7.94E-04
10	GO:0008676: 3-deoxy-8-phosphooctulonate synthase activity	7.94E-04
11	GO:0016422: mRNA (2'-O-methyladenosine-N6-)-methyltransferase activity	7.94E-04
12	GO:0004156: dihydropteroate synthase activity	7.94E-04
13	GO:0003848: 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase activity	7.94E-04
14	GO:0052906: tRNA (guanine(37)-N(1))-methyltransferase activity	7.94E-04
15	GO:0005290: L-histidine transmembrane transporter activity	7.94E-04
16	GO:0004008: copper-exporting ATPase activity	7.94E-04
17	GO:0003867: 4-aminobutyrate transaminase activity	7.94E-04
18	GO:0004071: aspartate-ammonia ligase activity	7.94E-04
19	GO:0033946: xyloglucan-specific endo-beta-1,4-glucanase activity	7.94E-04
20	GO:0004830: tryptophan-tRNA ligase activity	7.94E-04
21	GO:0052381: tRNA dimethylallyltransferase activity	7.94E-04
22	GO:0004016: adenylate cyclase activity	7.94E-04
23	GO:0004400: histidinol-phosphate transaminase activity	7.94E-04
24	GO:0001135: transcription factor activity, RNA polymerase II transcription factor recruiting	1.56E-03
25	GO:0004150: dihydroneopterin aldolase activity	1.72E-03
26	GO:0008805: carbon-monoxide oxygenase activity	1.72E-03
27	GO:0008493: tetracycline transporter activity	1.72E-03
28	GO:0000064: L-ornithine transmembrane transporter activity	1.72E-03
29	GO:0015929: hexosaminidase activity	1.72E-03
30	GO:0004563: beta-N-acetylhexosaminidase activity	1.72E-03
31	GO:0000179: rRNA (adenine-N6,N6-)-dimethyltransferase activity	1.72E-03
32	GO:0009884: cytokinin receptor activity	1.72E-03
33	GO:0017118: lipoyltransferase activity	1.72E-03
34	GO:0004066: asparagine synthase (glutamine-hydrolyzing) activity	1.72E-03
35	GO:0016415: octanoyltransferase activity	1.72E-03
36	GO:0102083: 7,8-dihydromonapterin aldolase activity	1.72E-03
37	GO:0000981: RNA polymerase II transcription factor activity, sequence-specific DNA binding	1.98E-03
38	GO:0009672: auxin:proton symporter activity	2.19E-03
39	GO:0003723: RNA binding	2.47E-03
40	GO:0004805: trehalose-phosphatase activity	2.57E-03
41	GO:0070330: aromatase activity	2.84E-03
42	GO:0017150: tRNA dihydrouridine synthase activity	2.84E-03
43	GO:0045548: phenylalanine ammonia-lyase activity	2.84E-03
44	GO:0004557: alpha-galactosidase activity	2.84E-03
45	GO:0016805: dipeptidase activity	2.84E-03
46	GO:0005034: osmosensor activity	2.84E-03
47	GO:0052692: raffinose alpha-galactosidase activity	2.84E-03
48	GO:0070180: large ribosomal subunit rRNA binding	2.84E-03
49	GO:0000156: phosphorelay response regulator activity	2.92E-03
50	GO:0004519: endonuclease activity	2.99E-03
51	GO:0010329: auxin efflux transmembrane transporter activity	3.89E-03
52	GO:0005262: calcium channel activity	3.89E-03
53	GO:0015181: arginine transmembrane transporter activity	4.14E-03
54	GO:0035197: siRNA binding	4.14E-03
55	GO:0015189: L-lysine transmembrane transporter activity	4.14E-03
56	GO:0004650: polygalacturonase activity	5.20E-03
57	GO:0005253: anion channel activity	5.60E-03
58	GO:0019199: transmembrane receptor protein kinase activity	5.60E-03
59	GO:0004930: G-protein coupled receptor activity	5.60E-03
60	GO:0004659: prenyltransferase activity	5.60E-03
61	GO:0016279: protein-lysine N-methyltransferase activity	5.60E-03
62	GO:0004845: uracil phosphoribosyltransferase activity	5.60E-03
63	GO:0004345: glucose-6-phosphate dehydrogenase activity	5.60E-03
64	GO:0004674: protein serine/threonine kinase activity	6.59E-03
65	GO:0005345: purine nucleobase transmembrane transporter activity	6.77E-03
66	GO:0004888: transmembrane signaling receptor activity	7.21E-03
67	GO:0004523: RNA-DNA hybrid ribonuclease activity	7.21E-03
68	GO:0018685: alkane 1-monooxygenase activity	7.21E-03
69	GO:0016773: phosphotransferase activity, alcohol group as acceptor	7.21E-03
70	GO:0070696: transmembrane receptor protein serine/threonine kinase binding	7.21E-03
71	GO:0008725: DNA-3-methyladenine glycosylase activity	7.21E-03
72	GO:0016706: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors	7.60E-03
73	GO:0008519: ammonium transmembrane transporter activity	8.96E-03
74	GO:0005247: voltage-gated chloride channel activity	8.96E-03
75	GO:2001070: starch binding	8.96E-03
76	GO:0004605: phosphatidate cytidylyltransferase activity	8.96E-03
77	GO:1990714: hydroxyproline O-galactosyltransferase activity	8.96E-03
78	GO:0016301: kinase activity	9.92E-03
79	GO:0045156: electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity	1.09E-02
80	GO:0004849: uridine kinase activity	1.09E-02
81	GO:0016832: aldehyde-lyase activity	1.09E-02
82	GO:0004656: procollagen-proline 4-dioxygenase activity	1.09E-02
83	GO:0019900: kinase binding	1.09E-02
84	GO:0004124: cysteine synthase activity	1.09E-02
85	GO:0008195: phosphatidate phosphatase activity	1.09E-02
86	GO:0043621: protein self-association	1.17E-02
87	GO:0001085: RNA polymerase II transcription factor binding	1.23E-02
88	GO:0019899: enzyme binding	1.29E-02
89	GO:0016762: xyloglucan:xyloglucosyl transferase activity	1.53E-02
90	GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds	1.57E-02
91	GO:0004518: nuclease activity	1.63E-02
92	GO:0008173: RNA methyltransferase activity	1.73E-02
93	GO:0003918: DNA topoisomerase type II (ATP-hydrolyzing) activity	1.73E-02
94	GO:0005375: copper ion transmembrane transporter activity	1.73E-02
95	GO:0008889: glycerophosphodiester phosphodiesterase activity	1.97E-02
96	GO:0004673: protein histidine kinase activity	2.48E-02
97	GO:0030247: polysaccharide binding	2.62E-02
98	GO:0016798: hydrolase activity, acting on glycosyl bonds	2.62E-02
99	GO:0005089: Rho guanyl-nucleotide exchange factor activity	2.75E-02
100	GO:0008327: methyl-CpG binding	2.75E-02
101	GO:0004521: endoribonuclease activity	3.02E-02
102	GO:0003725: double-stranded RNA binding	3.31E-02
103	GO:0004022: alcohol dehydrogenase (NAD) activity	3.31E-02
104	GO:0015266: protein channel activity	3.31E-02
105	GO:0015662: ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism	3.31E-02
106	GO:0004089: carbonate dehydratase activity	3.31E-02
107	GO:0031072: heat shock protein binding	3.31E-02
108	GO:0000155: phosphorelay sensor kinase activity	3.31E-02
109	GO:0009982: pseudouridine synthase activity	3.31E-02
110	GO:0001228: transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding	3.36E-02
111	GO:0016829: lyase activity	3.54E-02
112	GO:0042973: glucan endo-1,3-beta-D-glucosidase activity	3.61E-02
113	GO:0008083: growth factor activity	3.61E-02
114	GO:0000977: RNA polymerase II regulatory region sequence-specific DNA binding	3.76E-02
115	GO:0044212: transcription regulatory region DNA binding	3.77E-02
116	GO:0015144: carbohydrate transmembrane transporter activity	4.00E-02
117	GO:0031418: L-ascorbic acid binding	4.55E-02
118	GO:0005351: sugar:proton symporter activity	4.63E-02
119	GO:0043424: protein histidine kinase binding	4.88E-02