co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT5G09460

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0090615: mitochondrial mRNA processing	0.00E+00
2	GO:0031222: arabinan catabolic process	0.00E+00
3	GO:0042794: rRNA transcription from plastid promoter	0.00E+00
4	GO:0045014: negative regulation of transcription by glucose	0.00E+00
5	GO:0010059: positive regulation of atrichoblast fate specification	0.00E+00
6	GO:0090627: plant epidermal cell differentiation	0.00E+00
7	GO:0009606: tropism	0.00E+00
8	GO:0090322: regulation of superoxide metabolic process	0.00E+00
9	GO:1903224: regulation of endodermal cell differentiation	0.00E+00
10	GO:0035884: arabinan biosynthetic process	0.00E+00
11	GO:0080127: fruit septum development	0.00E+00
12	GO:0006003: fructose 2,6-bisphosphate metabolic process	0.00E+00
13	GO:0002949: tRNA threonylcarbamoyladenosine modification	0.00E+00
14	GO:0097164: ammonium ion metabolic process	0.00E+00
15	GO:0045184: establishment of protein localization	0.00E+00
16	GO:0002103: endonucleolytic cleavage of tetracistronic rRNA transcript (SSU-rRNA, LSU-rRNA, 4.5S-rRNA, 5S-rRNA)	0.00E+00
17	GO:0046620: regulation of organ growth	7.07E-10
18	GO:0042793: transcription from plastid promoter	4.27E-09
19	GO:0009658: chloroplast organization	1.90E-06
20	GO:0009734: auxin-activated signaling pathway	5.33E-06
21	GO:0009733: response to auxin	1.64E-05
22	GO:0009451: RNA modification	1.71E-05
23	GO:0010569: regulation of double-strand break repair via homologous recombination	3.63E-05
24	GO:0009416: response to light stimulus	7.27E-05
25	GO:0006518: peptide metabolic process	1.13E-04
26	GO:0009926: auxin polar transport	1.27E-04
27	GO:2000038: regulation of stomatal complex development	3.78E-04
28	GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway	6.18E-04
29	GO:0009913: epidermal cell differentiation	7.74E-04
30	GO:0035987: endodermal cell differentiation	9.39E-04
31	GO:0043609: regulation of carbon utilization	9.39E-04
32	GO:0006436: tryptophanyl-tRNA aminoacylation	9.39E-04
33	GO:0000066: mitochondrial ornithine transport	9.39E-04
34	GO:0015904: tetracycline transport	9.39E-04
35	GO:0034757: negative regulation of iron ion transport	9.39E-04
36	GO:0042659: regulation of cell fate specification	9.39E-04
37	GO:0019294: keto-3-deoxy-D-manno-octulosonic acid biosynthetic process	9.39E-04
38	GO:0072684: mitochondrial tRNA 3'-trailer cleavage, endonucleolytic	9.39E-04
39	GO:1905039: carboxylic acid transmembrane transport	9.39E-04
40	GO:1905200: gibberellic acid transmembrane transport	9.39E-04
41	GO:0080112: seed growth	9.39E-04
42	GO:0090558: plant epidermis development	9.39E-04
43	GO:0010063: positive regulation of trichoblast fate specification	9.39E-04
44	GO:0010480: microsporocyte differentiation	9.39E-04
45	GO:1903866: palisade mesophyll development	9.39E-04
46	GO:0006955: immune response	1.30E-03
47	GO:0048437: floral organ development	1.30E-03
48	GO:0016998: cell wall macromolecule catabolic process	1.38E-03
49	GO:0040008: regulation of growth	1.48E-03
50	GO:0000105: histidine biosynthetic process	1.62E-03
51	GO:0042255: ribosome assembly	1.62E-03
52	GO:0006353: DNA-templated transcription, termination	1.62E-03
53	GO:0009657: plastid organization	1.99E-03
54	GO:0007389: pattern specification process	1.99E-03
55	GO:1904143: positive regulation of carotenoid biosynthetic process	2.05E-03
56	GO:0080009: mRNA methylation	2.05E-03
57	GO:0006529: asparagine biosynthetic process	2.05E-03
58	GO:2000123: positive regulation of stomatal complex development	2.05E-03
59	GO:1902326: positive regulation of chlorophyll biosynthetic process	2.05E-03
60	GO:0070981: L-asparagine biosynthetic process	2.05E-03
61	GO:0010271: regulation of chlorophyll catabolic process	2.05E-03
62	GO:0018026: peptidyl-lysine monomethylation	2.05E-03
63	GO:0071497: cellular response to freezing	2.05E-03
64	GO:0009662: etioplast organization	2.05E-03
65	GO:1900033: negative regulation of trichome patterning	2.05E-03
66	GO:0000902: cell morphogenesis	2.39E-03
67	GO:0000373: Group II intron splicing	2.39E-03
68	GO:1900865: chloroplast RNA modification	2.84E-03
69	GO:0048829: root cap development	3.32E-03
70	GO:0006949: syncytium formation	3.32E-03
71	GO:0006535: cysteine biosynthetic process from serine	3.32E-03
72	GO:0001578: microtubule bundle formation	3.40E-03
73	GO:0034414: tRNA 3'-trailer cleavage, endonucleolytic	3.40E-03
74	GO:0090708: specification of plant organ axis polarity	3.40E-03
75	GO:0080117: secondary growth	3.40E-03
76	GO:0006000: fructose metabolic process	3.40E-03
77	GO:0090391: granum assembly	3.40E-03
78	GO:0042780: tRNA 3'-end processing	3.40E-03
79	GO:0009790: embryo development	4.38E-03
80	GO:0009828: plant-type cell wall loosening	4.42E-03
81	GO:0010252: auxin homeostasis	4.42E-03
82	GO:0045037: protein import into chloroplast stroma	4.43E-03
83	GO:0010371: regulation of gibberellin biosynthetic process	4.96E-03
84	GO:1902476: chloride transmembrane transport	4.96E-03
85	GO:0010071: root meristem specification	4.96E-03
86	GO:0051513: regulation of monopolar cell growth	4.96E-03
87	GO:0010239: chloroplast mRNA processing	4.96E-03
88	GO:0009800: cinnamic acid biosynthetic process	4.96E-03
89	GO:0044211: CTP salvage	4.96E-03
90	GO:0010306: rhamnogalacturonan II biosynthetic process	4.96E-03
91	GO:0046739: transport of virus in multicellular host	4.96E-03
92	GO:2000904: regulation of starch metabolic process	4.96E-03
93	GO:0051289: protein homotetramerization	4.96E-03
94	GO:0010588: cotyledon vascular tissue pattern formation	5.04E-03
95	GO:0010027: thylakoid membrane organization	5.55E-03
96	GO:0080188: RNA-directed DNA methylation	6.41E-03
97	GO:0006346: methylation-dependent chromatin silencing	6.71E-03
98	GO:1901141: regulation of lignin biosynthetic process	6.71E-03
99	GO:0006479: protein methylation	6.71E-03
100	GO:0048629: trichome patterning	6.71E-03
101	GO:1900864: mitochondrial RNA modification	6.71E-03
102	GO:0051322: anaphase	6.71E-03
103	GO:0030104: water homeostasis	6.71E-03
104	GO:0006221: pyrimidine nucleotide biosynthetic process	6.71E-03
105	GO:0046656: folic acid biosynthetic process	6.71E-03
106	GO:0006021: inositol biosynthetic process	6.71E-03
107	GO:0044206: UMP salvage	6.71E-03
108	GO:0009739: response to gibberellin	7.19E-03
109	GO:0048481: plant ovule development	7.82E-03
110	GO:0019344: cysteine biosynthetic process	7.96E-03
111	GO:0009107: lipoate biosynthetic process	8.66E-03
112	GO:0016123: xanthophyll biosynthetic process	8.66E-03
113	GO:0032876: negative regulation of DNA endoreduplication	8.66E-03
114	GO:0080110: sporopollenin biosynthetic process	8.66E-03
115	GO:0030308: negative regulation of cell growth	8.66E-03
116	GO:0010375: stomatal complex patterning	8.66E-03
117	GO:0048497: maintenance of floral organ identity	8.66E-03
118	GO:0003333: amino acid transmembrane transport	9.69E-03
119	GO:0010405: arabinogalactan protein metabolic process	1.08E-02
120	GO:0010304: PSII associated light-harvesting complex II catabolic process	1.08E-02
121	GO:0006655: phosphatidylglycerol biosynthetic process	1.08E-02
122	GO:0016554: cytidine to uridine editing	1.08E-02
123	GO:1902456: regulation of stomatal opening	1.08E-02
124	GO:0048831: regulation of shoot system development	1.08E-02
125	GO:0003006: developmental process involved in reproduction	1.08E-02
126	GO:0010315: auxin efflux	1.08E-02
127	GO:0006559: L-phenylalanine catabolic process	1.08E-02
128	GO:0006206: pyrimidine nucleobase metabolic process	1.08E-02
129	GO:0009643: photosynthetic acclimation	1.08E-02
130	GO:0018258: protein O-linked glycosylation via hydroxyproline	1.08E-02
131	GO:0009831: plant-type cell wall modification involved in multidimensional cell growth	1.16E-02
132	GO:0010082: regulation of root meristem growth	1.16E-02
133	GO:0030001: metal ion transport	1.26E-02
134	GO:2000037: regulation of stomatal complex patterning	1.31E-02
135	GO:0000079: regulation of cyclin-dependent protein serine/threonine kinase activity	1.31E-02
136	GO:0010310: regulation of hydrogen peroxide metabolic process	1.31E-02
137	GO:2000067: regulation of root morphogenesis	1.31E-02
138	GO:0009955: adaxial/abaxial pattern specification	1.31E-02
139	GO:0071470: cellular response to osmotic stress	1.31E-02
140	GO:0010067: procambium histogenesis	1.31E-02
141	GO:0009942: longitudinal axis specification	1.31E-02
142	GO:0048509: regulation of meristem development	1.31E-02
143	GO:0046654: tetrahydrofolate biosynthetic process	1.31E-02
144	GO:0030488: tRNA methylation	1.31E-02
145	GO:1901259: chloroplast rRNA processing	1.31E-02
146	GO:0010087: phloem or xylem histogenesis	1.49E-02
147	GO:0010103: stomatal complex morphogenesis	1.55E-02
148	GO:0009864: induced systemic resistance, jasmonic acid mediated signaling pathway	1.55E-02
149	GO:0007050: cell cycle arrest	1.55E-02
150	GO:0006821: chloride transport	1.55E-02
151	GO:0015937: coenzyme A biosynthetic process	1.55E-02
152	GO:0009396: folic acid-containing compound biosynthetic process	1.55E-02
153	GO:0048868: pollen tube development	1.61E-02
154	GO:0009741: response to brassinosteroid	1.61E-02
155	GO:0010305: leaf vascular tissue pattern formation	1.61E-02
156	GO:0009646: response to absence of light	1.73E-02
157	GO:0048544: recognition of pollen	1.73E-02
158	GO:0055075: potassium ion homeostasis	1.81E-02
159	GO:0052543: callose deposition in cell wall	1.81E-02
160	GO:0001522: pseudouridine synthesis	1.81E-02
161	GO:0009642: response to light intensity	1.81E-02
162	GO:0048766: root hair initiation	1.81E-02
163	GO:0048825: cotyledon development	1.86E-02
164	GO:0009664: plant-type cell wall organization	1.97E-02
165	GO:0080156: mitochondrial mRNA modification	1.99E-02
166	GO:0071554: cell wall organization or biogenesis	1.99E-02
167	GO:0006002: fructose 6-phosphate metabolic process	2.09E-02
168	GO:0019430: removal of superoxide radicals	2.09E-02
169	GO:0007186: G-protein coupled receptor signaling pathway	2.09E-02
170	GO:0010497: plasmodesmata-mediated intercellular transport	2.09E-02
171	GO:0032544: plastid translation	2.09E-02
172	GO:0032502: developmental process	2.13E-02
173	GO:0010583: response to cyclopentenone	2.13E-02
174	GO:0006468: protein phosphorylation	2.24E-02
175	GO:0009245: lipid A biosynthetic process	2.37E-02
176	GO:0048507: meristem development	2.37E-02
177	GO:0048589: developmental growth	2.37E-02
178	GO:0009793: embryo development ending in seed dormancy	2.39E-02
179	GO:0016567: protein ubiquitination	2.56E-02
180	GO:0009638: phototropism	2.67E-02
181	GO:0042761: very long-chain fatty acid biosynthetic process	2.67E-02
182	GO:2000280: regulation of root development	2.67E-02
183	GO:0006349: regulation of gene expression by genetic imprinting	2.67E-02
184	GO:0031425: chloroplast RNA processing	2.67E-02
185	GO:0048367: shoot system development	2.77E-02
186	GO:0045036: protein targeting to chloroplast	2.99E-02
187	GO:0006259: DNA metabolic process	2.99E-02
188	GO:0031627: telomeric loop formation	2.99E-02
189	GO:0010048: vernalization response	2.99E-02
190	GO:0048229: gametophyte development	3.31E-02
191	GO:0010015: root morphogenesis	3.31E-02
192	GO:0006265: DNA topological change	3.31E-02
193	GO:0015770: sucrose transport	3.31E-02
194	GO:0009750: response to fructose	3.31E-02
195	GO:0008361: regulation of cell size	3.65E-02
196	GO:0006790: sulfur compound metabolic process	3.65E-02
197	GO:0012501: programmed cell death	3.65E-02
198	GO:0010152: pollen maturation	3.65E-02
199	GO:0016024: CDP-diacylglycerol biosynthetic process	3.65E-02
200	GO:0010582: floral meristem determinacy	3.65E-02
201	GO:0009826: unidimensional cell growth	3.68E-02
202	GO:0000160: phosphorelay signal transduction system	3.96E-02
203	GO:0009691: cytokinin biosynthetic process	4.00E-02
204	GO:0010075: regulation of meristem growth	4.00E-02
205	GO:0009767: photosynthetic electron transport chain	4.00E-02
206	GO:0030048: actin filament-based movement	4.00E-02
207	GO:0010102: lateral root morphogenesis	4.00E-02
208	GO:0009785: blue light signaling pathway	4.00E-02
209	GO:0006811: ion transport	4.15E-02
210	GO:0006270: DNA replication initiation	4.35E-02
211	GO:0009934: regulation of meristem structural organization	4.35E-02
212	GO:0048467: gynoecium development	4.35E-02
213	GO:0010207: photosystem II assembly	4.35E-02
214	GO:0006541: glutamine metabolic process	4.35E-02
215	GO:0010020: chloroplast fission	4.35E-02
216	GO:0010223: secondary shoot formation	4.35E-02
217	GO:0006865: amino acid transport	4.55E-02
218	GO:0009058: biosynthetic process	4.72E-02
219	GO:0046854: phosphatidylinositol phosphorylation	4.72E-02
220	GO:0009901: anther dehiscence	4.72E-02
221	GO:0090351: seedling development	4.72E-02
222	GO:0006508: proteolysis	4.97E-02
223	GO:0034599: cellular response to oxidative stress	4.97E-02

Rank	GO Term	Adjusted P value
1	GO:0070009: serine-type aminopeptidase activity	0.00E+00
2	GO:0052834: inositol monophosphate phosphatase activity	0.00E+00
3	GO:0071633: dihydroceramidase activity	0.00E+00
4	GO:0042834: peptidoglycan binding	0.00E+00
5	GO:0004331: fructose-2,6-bisphosphate 2-phosphatase activity	0.00E+00
6	GO:0003873: 6-phosphofructo-2-kinase activity	0.00E+00
7	GO:0061711: N(6)-L-threonylcarbamoyladenine synthase	0.00E+00
8	GO:0004401: histidinol-phosphatase activity	0.00E+00
9	GO:0004519: endonuclease activity	4.19E-05
10	GO:0003723: RNA binding	5.20E-05
11	GO:0019843: rRNA binding	1.98E-04
12	GO:0004930: G-protein coupled receptor activity	3.78E-04
13	GO:0010347: L-galactose-1-phosphate phosphatase activity	9.39E-04
14	GO:0004016: adenylate cyclase activity	9.39E-04
15	GO:0004400: histidinol-phosphate transaminase activity	9.39E-04
16	GO:1905201: gibberellin transmembrane transporter activity	9.39E-04
17	GO:0004632: phosphopantothenate--cysteine ligase activity	9.39E-04
18	GO:0008676: 3-deoxy-8-phosphooctulonate synthase activity	9.39E-04
19	GO:0016422: mRNA (2'-O-methyladenosine-N6-)-methyltransferase activity	9.39E-04
20	GO:0016274: protein-arginine N-methyltransferase activity	9.39E-04
21	GO:0004156: dihydropteroate synthase activity	9.39E-04
22	GO:0003848: 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase activity	9.39E-04
23	GO:0005290: L-histidine transmembrane transporter activity	9.39E-04
24	GO:0052906: tRNA (guanine(37)-N(1))-methyltransferase activity	9.39E-04
25	GO:0004071: aspartate-ammonia ligase activity	9.39E-04
26	GO:0033946: xyloglucan-specific endo-beta-1,4-glucanase activity	9.39E-04
27	GO:0004830: tryptophan-tRNA ligase activity	9.39E-04
28	GO:0052381: tRNA dimethylallyltransferase activity	9.39E-04
29	GO:0004124: cysteine synthase activity	1.02E-03
30	GO:0004222: metalloendopeptidase activity	1.77E-03
31	GO:0003727: single-stranded RNA binding	1.93E-03
32	GO:0004066: asparagine synthase (glutamine-hydrolyzing) activity	2.05E-03
33	GO:0017118: lipoyltransferase activity	2.05E-03
34	GO:0016415: octanoyltransferase activity	2.05E-03
35	GO:0052832: inositol monophosphate 3-phosphatase activity	2.05E-03
36	GO:0000095: S-adenosyl-L-methionine transmembrane transporter activity	2.05E-03
37	GO:0008805: carbon-monoxide oxygenase activity	2.05E-03
38	GO:0008934: inositol monophosphate 1-phosphatase activity	2.05E-03
39	GO:0008493: tetracycline transporter activity	2.05E-03
40	GO:0052833: inositol monophosphate 4-phosphatase activity	2.05E-03
41	GO:0000064: L-ornithine transmembrane transporter activity	2.05E-03
42	GO:0015929: hexosaminidase activity	2.05E-03
43	GO:0004563: beta-N-acetylhexosaminidase activity	2.05E-03
44	GO:0000179: rRNA (adenine-N6,N6-)-dimethyltransferase activity	2.05E-03
45	GO:0009884: cytokinin receptor activity	2.05E-03
46	GO:0009672: auxin:proton symporter activity	2.84E-03
47	GO:0019901: protein kinase binding	3.15E-03
48	GO:0016805: dipeptidase activity	3.40E-03
49	GO:0005034: osmosensor activity	3.40E-03
50	GO:0017150: tRNA dihydrouridine synthase activity	3.40E-03
51	GO:0045548: phenylalanine ammonia-lyase activity	3.40E-03
52	GO:0042781: 3'-tRNA processing endoribonuclease activity	3.40E-03
53	GO:0008508: bile acid:sodium symporter activity	4.96E-03
54	GO:0001872: (1->3)-beta-D-glucan binding	4.96E-03
55	GO:0015189: L-lysine transmembrane transporter activity	4.96E-03
56	GO:0009041: uridylate kinase activity	4.96E-03
57	GO:0015181: arginine transmembrane transporter activity	4.96E-03
58	GO:0009982: pseudouridine synthase activity	5.04E-03
59	GO:0003725: double-stranded RNA binding	5.04E-03
60	GO:0010329: auxin efflux transmembrane transporter activity	5.04E-03
61	GO:0042973: glucan endo-1,3-beta-D-glucosidase activity	5.70E-03
62	GO:0046556: alpha-L-arabinofuranosidase activity	6.71E-03
63	GO:0016279: protein-lysine N-methyltransferase activity	6.71E-03
64	GO:0004845: uracil phosphoribosyltransferase activity	6.71E-03
65	GO:0010011: auxin binding	6.71E-03
66	GO:0010328: auxin influx transmembrane transporter activity	6.71E-03
67	GO:0005253: anion channel activity	6.71E-03
68	GO:0005215: transporter activity	7.08E-03
69	GO:0004650: polygalacturonase activity	7.74E-03
70	GO:0070696: transmembrane receptor protein serine/threonine kinase binding	8.66E-03
71	GO:0008725: DNA-3-methyladenine glycosylase activity	8.66E-03
72	GO:0004888: transmembrane signaling receptor activity	8.66E-03
73	GO:0016773: phosphotransferase activity, alcohol group as acceptor	8.66E-03
74	GO:0004871: signal transducer activity	9.33E-03
75	GO:0005247: voltage-gated chloride channel activity	1.08E-02
76	GO:2001070: starch binding	1.08E-02
77	GO:0003688: DNA replication origin binding	1.08E-02
78	GO:0004605: phosphatidate cytidylyltransferase activity	1.08E-02
79	GO:1990714: hydroxyproline O-galactosyltransferase activity	1.08E-02
80	GO:0031177: phosphopantetheine binding	1.08E-02
81	GO:0004784: superoxide dismutase activity	1.08E-02
82	GO:0030570: pectate lyase activity	1.16E-02
83	GO:0019900: kinase binding	1.31E-02
84	GO:0008195: phosphatidate phosphatase activity	1.31E-02
85	GO:0045156: electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity	1.31E-02
86	GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity	1.31E-02
87	GO:0004849: uridine kinase activity	1.31E-02
88	GO:0016832: aldehyde-lyase activity	1.31E-02
89	GO:0000035: acyl binding	1.31E-02
90	GO:0004656: procollagen-proline 4-dioxygenase activity	1.31E-02
91	GO:0000977: RNA polymerase II regulatory region sequence-specific DNA binding	1.53E-02
92	GO:0004674: protein serine/threonine kinase activity	1.61E-02
93	GO:0001085: RNA polymerase II transcription factor binding	1.61E-02
94	GO:0000036: ACP phosphopantetheine attachment site binding involved in fatty acid biosynthetic process	1.81E-02
95	GO:0008173: RNA methyltransferase activity	2.09E-02
96	GO:0003918: DNA topoisomerase type II (ATP-hydrolyzing) activity	2.09E-02
97	GO:0008889: glycerophosphodiester phosphodiesterase activity	2.37E-02
98	GO:0003777: microtubule motor activity	2.45E-02
99	GO:0001135: transcription factor activity, RNA polymerase II transcription factor recruiting	2.50E-02
100	GO:0008237: metallopeptidase activity	2.57E-02
101	GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds	2.70E-02
102	GO:0016413: O-acetyltransferase activity	2.73E-02
103	GO:0000981: RNA polymerase II transcription factor activity, sequence-specific DNA binding	2.99E-02
104	GO:0004673: protein histidine kinase activity	2.99E-02
105	GO:0008559: xenobiotic-transporting ATPase activity	3.31E-02
106	GO:0003691: double-stranded telomeric DNA binding	3.31E-02
107	GO:0008515: sucrose transmembrane transporter activity	3.31E-02
108	GO:0005089: Rho guanyl-nucleotide exchange factor activity	3.31E-02
109	GO:0015238: drug transmembrane transporter activity	3.96E-02
110	GO:0031072: heat shock protein binding	4.00E-02
111	GO:0000155: phosphorelay sensor kinase activity	4.00E-02
112	GO:0004022: alcohol dehydrogenase (NAD) activity	4.00E-02
113	GO:0003774: motor activity	4.35E-02
114	GO:0001228: transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding	4.35E-02
115	GO:0016614: oxidoreductase activity, acting on CH-OH group of donors	4.35E-02
116	GO:0005217: intracellular ligand-gated ion channel activity	4.72E-02
117	GO:0004190: aspartic-type endopeptidase activity	4.72E-02
118	GO:0004970: ionotropic glutamate receptor activity	4.72E-02
119	GO:0051119: sugar transmembrane transporter activity	4.72E-02
120	GO:0016706: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors	4.76E-02
121	GO:0016829: lyase activity	4.87E-02