co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT5G08600

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0019988: charged-tRNA amino acid modification	0.00E+00
2	GO:0042794: rRNA transcription from plastid promoter	0.00E+00
3	GO:0010323: negative regulation of isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway	0.00E+00
4	GO:0045014: negative regulation of transcription by glucose	0.00E+00
5	GO:0010059: positive regulation of atrichoblast fate specification	0.00E+00
6	GO:0090322: regulation of superoxide metabolic process	0.00E+00
7	GO:1901528: hydrogen peroxide mediated signaling pathway involved in stomatal movement	0.00E+00
8	GO:0080127: fruit septum development	0.00E+00
9	GO:0046486: glycerolipid metabolic process	0.00E+00
10	GO:0042793: transcription from plastid promoter	1.66E-06
11	GO:0046620: regulation of organ growth	7.06E-06
12	GO:0006518: peptide metabolic process	1.35E-05
13	GO:0009733: response to auxin	1.43E-04
14	GO:0042255: ribosome assembly	2.83E-04
15	GO:0006353: DNA-templated transcription, termination	2.83E-04
16	GO:0000025: maltose catabolic process	2.87E-04
17	GO:0019294: keto-3-deoxy-D-manno-octulosonic acid biosynthetic process	2.87E-04
18	GO:0080112: seed growth	2.87E-04
19	GO:1903866: palisade mesophyll development	2.87E-04
20	GO:1905039: carboxylic acid transmembrane transport	2.87E-04
21	GO:1905200: gibberellic acid transmembrane transport	2.87E-04
22	GO:0010063: positive regulation of trichoblast fate specification	2.87E-04
23	GO:0048367: shoot system development	4.56E-04
24	GO:0009828: plant-type cell wall loosening	4.60E-04
25	GO:0048829: root cap development	5.80E-04
26	GO:0016441: posttranscriptional gene silencing	5.80E-04
27	GO:0006949: syncytium formation	5.80E-04
28	GO:0080009: mRNA methylation	6.30E-04
29	GO:1901529: positive regulation of anion channel activity	6.30E-04
30	GO:0009967: positive regulation of signal transduction	6.30E-04
31	GO:0019374: galactolipid metabolic process	6.30E-04
32	GO:0010569: regulation of double-strand break repair via homologous recombination	6.30E-04
33	GO:0006650: glycerophospholipid metabolic process	6.30E-04
34	GO:2000071: regulation of defense response by callose deposition	6.30E-04
35	GO:0009662: etioplast organization	6.30E-04
36	GO:0009734: auxin-activated signaling pathway	7.17E-04
37	GO:0010588: cotyledon vascular tissue pattern formation	8.67E-04
38	GO:1901527: abscisic acid-activated signaling pathway involved in stomatal movement	1.02E-03
39	GO:0046168: glycerol-3-phosphate catabolic process	1.02E-03
40	GO:0090391: granum assembly	1.02E-03
41	GO:0045017: glycerolipid biosynthetic process	1.46E-03
42	GO:0010371: regulation of gibberellin biosynthetic process	1.46E-03
43	GO:0010071: root meristem specification	1.46E-03
44	GO:0007276: gamete generation	1.46E-03
45	GO:0006072: glycerol-3-phosphate metabolic process	1.46E-03
46	GO:0016556: mRNA modification	1.46E-03
47	GO:0010306: rhamnogalacturonan II biosynthetic process	1.46E-03
48	GO:0003333: amino acid transmembrane transport	1.62E-03
49	GO:0006397: mRNA processing	1.66E-03
50	GO:0009831: plant-type cell wall modification involved in multidimensional cell growth	1.93E-03
51	GO:0006479: protein methylation	1.96E-03
52	GO:0006221: pyrimidine nucleotide biosynthetic process	1.96E-03
53	GO:0006021: inositol biosynthetic process	1.96E-03
54	GO:0009664: plant-type cell wall organization	1.98E-03
55	GO:0042127: regulation of cell proliferation	2.09E-03
56	GO:0006364: rRNA processing	2.17E-03
57	GO:0010118: stomatal movement	2.45E-03
58	GO:0008033: tRNA processing	2.45E-03
59	GO:0016123: xanthophyll biosynthetic process	2.50E-03
60	GO:0009247: glycolipid biosynthetic process	2.50E-03
61	GO:0016120: carotene biosynthetic process	2.50E-03
62	GO:0010305: leaf vascular tissue pattern formation	2.64E-03
63	GO:0016554: cytidine to uridine editing	3.08E-03
64	GO:1902456: regulation of stomatal opening	3.08E-03
65	GO:0003006: developmental process involved in reproduction	3.08E-03
66	GO:0009643: photosynthetic acclimation	3.08E-03
67	GO:0006014: D-ribose metabolic process	3.08E-03
68	GO:0080156: mitochondrial mRNA modification	3.26E-03
69	GO:0010310: regulation of hydrogen peroxide metabolic process	3.71E-03
70	GO:0000462: maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	3.71E-03
71	GO:0006401: RNA catabolic process	4.38E-03
72	GO:0048437: floral organ development	4.38E-03
73	GO:0015937: coenzyme A biosynthetic process	4.38E-03
74	GO:0010492: maintenance of shoot apical meristem identity	5.08E-03
75	GO:0000105: histidine biosynthetic process	5.08E-03
76	GO:0009231: riboflavin biosynthetic process	5.08E-03
77	GO:0052543: callose deposition in cell wall	5.08E-03
78	GO:0009787: regulation of abscisic acid-activated signaling pathway	5.08E-03
79	GO:0009642: response to light intensity	5.08E-03
80	GO:0006402: mRNA catabolic process	5.08E-03
81	GO:0019375: galactolipid biosynthetic process	5.08E-03
82	GO:0032508: DNA duplex unwinding	5.08E-03
83	GO:0010497: plasmodesmata-mediated intercellular transport	5.82E-03
84	GO:0019430: removal of superoxide radicals	5.82E-03
85	GO:0032544: plastid translation	5.82E-03
86	GO:0007389: pattern specification process	5.82E-03
87	GO:0040008: regulation of growth	6.43E-03
88	GO:0000902: cell morphogenesis	6.60E-03
89	GO:0048507: meristem development	6.60E-03
90	GO:0000373: Group II intron splicing	6.60E-03
91	GO:0048589: developmental growth	6.60E-03
92	GO:1900865: chloroplast RNA modification	7.41E-03
93	GO:0031425: chloroplast RNA processing	7.41E-03
94	GO:0006865: amino acid transport	7.44E-03
95	GO:0045036: protein targeting to chloroplast	8.26E-03
96	GO:0006535: cysteine biosynthetic process from serine	8.26E-03
97	GO:0009682: induced systemic resistance	9.14E-03
98	GO:0015770: sucrose transport	9.14E-03
99	GO:0009750: response to fructose	9.14E-03
100	GO:0009926: auxin polar transport	1.01E-02
101	GO:0006790: sulfur compound metabolic process	1.01E-02
102	GO:0012501: programmed cell death	1.01E-02
103	GO:0005983: starch catabolic process	1.01E-02
104	GO:0045037: protein import into chloroplast stroma	1.01E-02
105	GO:0010582: floral meristem determinacy	1.01E-02
106	GO:0010152: pollen maturation	1.01E-02
107	GO:0010102: lateral root morphogenesis	1.10E-02
108	GO:0006006: glucose metabolic process	1.10E-02
109	GO:0009826: unidimensional cell growth	1.13E-02
110	GO:0009658: chloroplast organization	1.19E-02
111	GO:0009887: animal organ morphogenesis	1.20E-02
112	GO:0048467: gynoecium development	1.20E-02
113	GO:0010020: chloroplast fission	1.20E-02
114	GO:0046854: phosphatidylinositol phosphorylation	1.30E-02
115	GO:0080188: RNA-directed DNA methylation	1.30E-02
116	GO:0009901: anther dehiscence	1.30E-02
117	GO:0006636: unsaturated fatty acid biosynthetic process	1.40E-02
118	GO:0019344: cysteine biosynthetic process	1.51E-02
119	GO:0010073: meristem maintenance	1.62E-02
120	GO:0019953: sexual reproduction	1.62E-02
121	GO:0010431: seed maturation	1.73E-02
122	GO:0030245: cellulose catabolic process	1.85E-02
123	GO:2000022: regulation of jasmonic acid mediated signaling pathway	1.85E-02
124	GO:0009624: response to nematode	1.94E-02
125	GO:0071215: cellular response to abscisic acid stimulus	1.96E-02
126	GO:0006396: RNA processing	2.00E-02
127	GO:0048443: stamen development	2.08E-02
128	GO:0009793: embryo development ending in seed dormancy	2.30E-02
129	GO:0010087: phloem or xylem histogenesis	2.33E-02
130	GO:0080022: primary root development	2.33E-02
131	GO:0010501: RNA secondary structure unwinding	2.33E-02
132	GO:0032259: methylation	2.42E-02
133	GO:0048868: pollen tube development	2.46E-02
134	GO:0007018: microtubule-based movement	2.59E-02
135	GO:0008654: phospholipid biosynthetic process	2.72E-02
136	GO:0009851: auxin biosynthetic process	2.72E-02
137	GO:0009749: response to glucose	2.72E-02
138	GO:0019252: starch biosynthetic process	2.72E-02
139	GO:0071554: cell wall organization or biogenesis	2.86E-02
140	GO:0002229: defense response to oomycetes	2.86E-02
141	GO:0032502: developmental process	3.00E-02
142	GO:0010583: response to cyclopentenone	3.00E-02
143	GO:0031047: gene silencing by RNA	3.00E-02
144	GO:0019761: glucosinolate biosynthetic process	3.00E-02
145	GO:0016036: cellular response to phosphate starvation	3.12E-02
146	GO:0030163: protein catabolic process	3.13E-02
147	GO:0019760: glucosinolate metabolic process	3.28E-02
148	GO:0045490: pectin catabolic process	3.35E-02
149	GO:0010027: thylakoid membrane organization	3.72E-02
150	GO:0008380: RNA splicing	3.99E-02
151	GO:0009627: systemic acquired resistance	4.02E-02
152	GO:0015995: chlorophyll biosynthetic process	4.17E-02
153	GO:0016311: dephosphorylation	4.33E-02
154	GO:0048481: plant ovule development	4.49E-02
155	GO:0007275: multicellular organism development	4.49E-02
156	GO:0006811: ion transport	4.81E-02
157	GO:0030154: cell differentiation	4.89E-02
158	GO:0007165: signal transduction	4.92E-02

Rank	GO Term	Adjusted P value
1	GO:0052834: inositol monophosphate phosphatase activity	0.00E+00
2	GO:0043399: tRNA A64-2'-O-ribosylphosphate transferase activity	0.00E+00
3	GO:0016763: transferase activity, transferring pentosyl groups	0.00E+00
4	GO:0004746: riboflavin synthase activity	0.00E+00
5	GO:0004401: histidinol-phosphatase activity	0.00E+00
6	GO:0071633: dihydroceramidase activity	0.00E+00
7	GO:0003723: RNA binding	2.95E-05
8	GO:0004654: polyribonucleotide nucleotidyltransferase activity	2.87E-04
9	GO:0010347: L-galactose-1-phosphate phosphatase activity	2.87E-04
10	GO:0004016: adenylate cyclase activity	2.87E-04
11	GO:1905201: gibberellin transmembrane transporter activity	2.87E-04
12	GO:0004632: phosphopantothenate--cysteine ligase activity	2.87E-04
13	GO:0008676: 3-deoxy-8-phosphooctulonate synthase activity	2.87E-04
14	GO:0016422: mRNA (2'-O-methyladenosine-N6-)-methyltransferase activity	2.87E-04
15	GO:0004134: 4-alpha-glucanotransferase activity	2.87E-04
16	GO:0016274: protein-arginine N-methyltransferase activity	2.87E-04
17	GO:0008173: RNA methyltransferase activity	3.49E-04
18	GO:0042389: omega-3 fatty acid desaturase activity	6.30E-04
19	GO:0004809: tRNA (guanine-N2-)-methyltransferase activity	6.30E-04
20	GO:0046509: 1,2-diacylglycerol 3-beta-galactosyltransferase activity	6.30E-04
21	GO:0052832: inositol monophosphate 3-phosphatase activity	6.30E-04
22	GO:0000774: adenyl-nucleotide exchange factor activity	6.30E-04
23	GO:0008934: inositol monophosphate 1-phosphatase activity	6.30E-04
24	GO:0052833: inositol monophosphate 4-phosphatase activity	6.30E-04
25	GO:0000179: rRNA (adenine-N6,N6-)-dimethyltransferase activity	6.30E-04
26	GO:0005078: MAP-kinase scaffold activity	6.30E-04
27	GO:0019843: rRNA binding	8.13E-04
28	GO:0000977: RNA polymerase II regulatory region sequence-specific DNA binding	9.87E-04
29	GO:0004367: glycerol-3-phosphate dehydrogenase [NAD+] activity	1.02E-03
30	GO:0016805: dipeptidase activity	1.02E-03
31	GO:0009041: uridylate kinase activity	1.46E-03
32	GO:0004519: endonuclease activity	1.79E-03
33	GO:0030570: pectate lyase activity	1.93E-03
34	GO:0010011: auxin binding	1.96E-03
35	GO:0010328: auxin influx transmembrane transporter activity	1.96E-03
36	GO:0004930: G-protein coupled receptor activity	1.96E-03
37	GO:0003727: single-stranded RNA binding	2.09E-03
38	GO:0003690: double-stranded DNA binding	2.27E-03
39	GO:0008168: methyltransferase activity	2.42E-03
40	GO:0004888: transmembrane signaling receptor activity	2.50E-03
41	GO:0001085: RNA polymerase II transcription factor binding	2.64E-03
42	GO:0003968: RNA-directed 5'-3' RNA polymerase activity	3.08E-03
43	GO:0043140: ATP-dependent 3'-5' DNA helicase activity	3.08E-03
44	GO:0004784: superoxide dismutase activity	3.08E-03
45	GO:0009378: four-way junction helicase activity	3.08E-03
46	GO:0008026: ATP-dependent helicase activity	3.66E-03
47	GO:0004124: cysteine synthase activity	3.71E-03
48	GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity	3.71E-03
49	GO:0004747: ribokinase activity	3.71E-03
50	GO:0043138: 3'-5' DNA helicase activity	3.71E-03
51	GO:0008865: fructokinase activity	5.08E-03
52	GO:0003724: RNA helicase activity	5.82E-03
53	GO:0016717: oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water	5.82E-03
54	GO:0004222: metalloendopeptidase activity	6.77E-03
55	GO:0001228: transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding	7.10E-03
56	GO:0008515: sucrose transmembrane transporter activity	9.14E-03
57	GO:0000049: tRNA binding	1.01E-02
58	GO:0000175: 3'-5'-exoribonuclease activity	1.10E-02
59	GO:0003725: double-stranded RNA binding	1.10E-02
60	GO:0015293: symporter activity	1.13E-02
61	GO:0004190: aspartic-type endopeptidase activity	1.30E-02
62	GO:0051119: sugar transmembrane transporter activity	1.30E-02
63	GO:0015171: amino acid transmembrane transporter activity	1.51E-02
64	GO:0051087: chaperone binding	1.62E-02
65	GO:0003779: actin binding	1.88E-02
66	GO:0008810: cellulase activity	1.96E-02
67	GO:0016538: cyclin-dependent protein serine/threonine kinase regulator activity	2.46E-02
68	GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	2.49E-02
69	GO:0010181: FMN binding	2.59E-02
70	GO:0003677: DNA binding	3.22E-02
71	GO:0004702: signal transducer, downstream of receptor, with serine/threonine kinase activity	3.42E-02
72	GO:0008237: metallopeptidase activity	3.42E-02
73	GO:0005200: structural constituent of cytoskeleton	3.42E-02
74	GO:0016413: O-acetyltransferase activity	3.57E-02
75	GO:0051213: dioxygenase activity	3.72E-02
76	GO:0004004: ATP-dependent RNA helicase activity	4.17E-02
77	GO:0046872: metal ion binding	4.86E-02