Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT5G08415

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0046471: phosphatidylglycerol metabolic process0.00E+00
2GO:1901401: regulation of tetrapyrrole metabolic process0.00E+00
3GO:0006982: response to lipid hydroperoxide0.00E+00
4GO:0010335: response to non-ionic osmotic stress0.00E+00
5GO:1901918: negative regulation of exoribonuclease activity0.00E+00
6GO:0005996: monosaccharide metabolic process0.00E+00
7GO:0019265: glycine biosynthetic process, by transamination of glyoxylate0.00E+00
8GO:0015979: photosynthesis1.30E-09
9GO:0015995: chlorophyll biosynthetic process2.31E-08
10GO:0010207: photosystem II assembly1.02E-07
11GO:0032544: plastid translation3.88E-07
12GO:0009773: photosynthetic electron transport in photosystem I1.96E-06
13GO:0006094: gluconeogenesis3.68E-06
14GO:0009658: chloroplast organization5.79E-06
15GO:0055114: oxidation-reduction process9.18E-06
16GO:0009645: response to low light intensity stimulus1.11E-05
17GO:0009768: photosynthesis, light harvesting in photosystem I1.26E-05
18GO:0018298: protein-chromophore linkage1.73E-05
19GO:0015994: chlorophyll metabolic process9.74E-05
20GO:0010600: regulation of auxin biosynthetic process9.74E-05
21GO:0006810: transport1.26E-04
22GO:0006636: unsaturated fatty acid biosynthetic process1.78E-04
23GO:0032259: methylation2.20E-04
24GO:0010244: response to low fluence blue light stimulus by blue low-fluence system2.91E-04
25GO:0051775: response to redox state4.05E-04
26GO:1904964: positive regulation of phytol biosynthetic process4.05E-04
27GO:0071277: cellular response to calcium ion4.05E-04
28GO:0065002: intracellular protein transmembrane transport4.05E-04
29GO:0043087: regulation of GTPase activity4.05E-04
30GO:0071461: cellular response to redox state4.05E-04
31GO:0046167: glycerol-3-phosphate biosynthetic process4.05E-04
32GO:0034337: RNA folding4.05E-04
33GO:0019510: S-adenosylhomocysteine catabolic process4.05E-04
34GO:0051180: vitamin transport4.05E-04
35GO:0015969: guanosine tetraphosphate metabolic process4.05E-04
36GO:0030974: thiamine pyrophosphate transport4.05E-04
37GO:0046467: membrane lipid biosynthetic process4.05E-04
38GO:0043953: protein transport by the Tat complex4.05E-04
39GO:1904966: positive regulation of vitamin E biosynthetic process4.05E-04
40GO:0010426: DNA methylation on cytosine within a CHH sequence4.05E-04
41GO:0010928: regulation of auxin mediated signaling pathway4.71E-04
42GO:0009704: de-etiolation4.71E-04
43GO:0071482: cellular response to light stimulus5.75E-04
44GO:0006754: ATP biosynthetic process6.89E-04
45GO:0006098: pentose-phosphate shunt6.89E-04
46GO:0006783: heme biosynthetic process6.89E-04
47GO:0009735: response to cytokinin7.51E-04
48GO:0006779: porphyrin-containing compound biosynthetic process8.13E-04
49GO:0008616: queuosine biosynthetic process8.76E-04
50GO:0006729: tetrahydrobiopterin biosynthetic process8.76E-04
51GO:0030388: fructose 1,6-bisphosphate metabolic process8.76E-04
52GO:0042819: vitamin B6 biosynthetic process8.76E-04
53GO:0080005: photosystem stoichiometry adjustment8.76E-04
54GO:0033353: S-adenosylmethionine cycle8.76E-04
55GO:1902326: positive regulation of chlorophyll biosynthetic process8.76E-04
56GO:0015893: drug transport8.76E-04
57GO:0006650: glycerophospholipid metabolic process8.76E-04
58GO:0006096: glycolytic process9.43E-04
59GO:0010027: thylakoid membrane organization1.09E-03
60GO:0018119: peptidyl-cysteine S-nitrosylation1.09E-03
61GO:0009767: photosynthetic electron transport chain1.41E-03
62GO:0044375: regulation of peroxisome size1.42E-03
63GO:0006081: cellular aldehyde metabolic process1.42E-03
64GO:0006000: fructose metabolic process1.42E-03
65GO:0090391: granum assembly1.42E-03
66GO:0046168: glycerol-3-phosphate catabolic process1.42E-03
67GO:0006518: peptide metabolic process1.42E-03
68GO:0019253: reductive pentose-phosphate cycle1.59E-03
69GO:0007031: peroxisome organization1.78E-03
70GO:0009853: photorespiration2.05E-03
71GO:0080158: chloroplast ribulose bisphosphate carboxylase complex biogenesis2.06E-03
72GO:2001141: regulation of RNA biosynthetic process2.06E-03
73GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly2.06E-03
74GO:0071484: cellular response to light intensity2.06E-03
75GO:0009152: purine ribonucleotide biosynthetic process2.06E-03
76GO:0046653: tetrahydrofolate metabolic process2.06E-03
77GO:0006107: oxaloacetate metabolic process2.06E-03
78GO:0033014: tetrapyrrole biosynthetic process2.06E-03
79GO:0006072: glycerol-3-phosphate metabolic process2.06E-03
80GO:0008615: pyridoxine biosynthetic process2.06E-03
81GO:0010731: protein glutathionylation2.06E-03
82GO:0042823: pyridoxal phosphate biosynthetic process2.06E-03
83GO:0015976: carbon utilization2.76E-03
84GO:0015689: molybdate ion transport2.76E-03
85GO:0009765: photosynthesis, light harvesting2.76E-03
86GO:0045727: positive regulation of translation2.76E-03
87GO:0006536: glutamate metabolic process2.76E-03
88GO:0006546: glycine catabolic process2.76E-03
89GO:0006734: NADH metabolic process2.76E-03
90GO:0010114: response to red light2.84E-03
91GO:0009644: response to high light intensity3.14E-03
92GO:0006656: phosphatidylcholine biosynthetic process3.54E-03
93GO:0043097: pyrimidine nucleoside salvage3.54E-03
94GO:0006465: signal peptide processing3.54E-03
95GO:0042631: cellular response to water deprivation4.07E-03
96GO:0042549: photosystem II stabilization4.38E-03
97GO:0006520: cellular amino acid metabolic process4.38E-03
98GO:0009920: cell plate formation involved in plant-type cell wall biogenesis4.38E-03
99GO:0006086: acetyl-CoA biosynthetic process from pyruvate4.38E-03
100GO:0006206: pyrimidine nucleobase metabolic process4.38E-03
101GO:0019252: starch biosynthetic process5.06E-03
102GO:1901259: chloroplast rRNA processing5.27E-03
103GO:0000054: ribosomal subunit export from nucleus5.27E-03
104GO:0010189: vitamin E biosynthetic process5.27E-03
105GO:0009854: oxidative photosynthetic carbon pathway5.27E-03
106GO:0045926: negative regulation of growth5.27E-03
107GO:0006412: translation6.08E-03
108GO:0010161: red light signaling pathway6.23E-03
109GO:0009772: photosynthetic electron transport in photosystem II6.23E-03
110GO:0010196: nonphotochemical quenching6.23E-03
111GO:1900057: positive regulation of leaf senescence6.23E-03
112GO:0016559: peroxisome fission7.25E-03
113GO:0007155: cell adhesion7.25E-03
114GO:0042255: ribosome assembly7.25E-03
115GO:0006353: DNA-templated transcription, termination7.25E-03
116GO:0009932: cell tip growth8.32E-03
117GO:0006002: fructose 6-phosphate metabolic process8.32E-03
118GO:0009657: plastid organization8.32E-03
119GO:0006526: arginine biosynthetic process8.32E-03
120GO:0090305: nucleic acid phosphodiester bond hydrolysis9.45E-03
121GO:0010206: photosystem II repair9.45E-03
122GO:0090333: regulation of stomatal closure9.45E-03
123GO:0005975: carbohydrate metabolic process1.05E-02
124GO:0010205: photoinhibition1.06E-02
125GO:0010218: response to far red light1.13E-02
126GO:0043069: negative regulation of programmed cell death1.19E-02
127GO:0006782: protoporphyrinogen IX biosynthetic process1.19E-02
128GO:0009637: response to blue light1.30E-02
129GO:0000272: polysaccharide catabolic process1.31E-02
130GO:0006415: translational termination1.31E-02
131GO:0019684: photosynthesis, light reaction1.31E-02
132GO:0006352: DNA-templated transcription, initiation1.31E-02
133GO:0034599: cellular response to oxidative stress1.36E-02
134GO:0006108: malate metabolic process1.58E-02
135GO:0006807: nitrogen compound metabolic process1.58E-02
136GO:0018107: peptidyl-threonine phosphorylation1.58E-02
137GO:0009725: response to hormone1.58E-02
138GO:0005986: sucrose biosynthetic process1.58E-02
139GO:0009266: response to temperature stimulus1.73E-02
140GO:0034605: cellular response to heat1.73E-02
141GO:0009636: response to toxic substance1.90E-02
142GO:0009833: plant-type primary cell wall biogenesis2.02E-02
143GO:0019762: glucosinolate catabolic process2.02E-02
144GO:0009409: response to cold2.22E-02
145GO:0006364: rRNA processing2.28E-02
146GO:0009585: red, far-red light phototransduction2.28E-02
147GO:0061077: chaperone-mediated protein folding2.50E-02
148GO:0031408: oxylipin biosynthetic process2.50E-02
149GO:0006306: DNA methylation2.50E-02
150GO:0006730: one-carbon metabolic process2.66E-02
151GO:0007005: mitochondrion organization2.66E-02
152GO:0019748: secondary metabolic process2.66E-02
153GO:0010017: red or far-red light signaling pathway2.66E-02
154GO:0016226: iron-sulfur cluster assembly2.66E-02
155GO:0030433: ubiquitin-dependent ERAD pathway2.66E-02
156GO:0043086: negative regulation of catalytic activity2.69E-02
157GO:0009693: ethylene biosynthetic process2.83E-02
158GO:0046686: response to cadmium ion2.89E-02
159GO:0009306: protein secretion3.01E-02
160GO:0006817: phosphate ion transport3.01E-02
161GO:0019722: calcium-mediated signaling3.01E-02
162GO:0009561: megagametogenesis3.01E-02
163GO:0006396: RNA processing3.34E-02
164GO:0006606: protein import into nucleus3.37E-02
165GO:0009742: brassinosteroid mediated signaling pathway3.43E-02
166GO:0042742: defense response to bacterium3.45E-02
167GO:0048868: pollen tube development3.55E-02
168GO:0009741: response to brassinosteroid3.55E-02
169GO:0015986: ATP synthesis coupled proton transport3.74E-02
170GO:0006814: sodium ion transport3.74E-02
171GO:0009646: response to absence of light3.74E-02
172GO:0008654: phospholipid biosynthetic process3.93E-02
173GO:0009791: post-embryonic development3.93E-02
174GO:0000302: response to reactive oxygen species4.12E-02
175GO:0009058: biosynthetic process4.27E-02
176GO:0032502: developmental process4.32E-02
177GO:0010583: response to cyclopentenone4.32E-02
178GO:0030163: protein catabolic process4.52E-02
179GO:0009567: double fertilization forming a zygote and endosperm4.73E-02
180GO:0007267: cell-cell signaling4.93E-02
RankGO TermAdjusted P value
1GO:0008465: glycerate dehydrogenase activity0.00E+00
2GO:0046408: chlorophyll synthetase activity0.00E+00
3GO:0048529: magnesium-protoporphyrin IX monomethyl ester (oxidative) cyclase activity0.00E+00
4GO:0008942: nitrite reductase [NAD(P)H] activity0.00E+00
5GO:0050281: serine-glyoxylate transaminase activity0.00E+00
6GO:0052637: delta 3-trans-hexadecenoic acid phosphatidylglycerol desaturase activity0.00E+00
7GO:0046863: ribulose-1,5-bisphosphate carboxylase/oxygenase activator activity0.00E+00
8GO:0030504: inorganic diphosphate transmembrane transporter activity0.00E+00
9GO:0046406: magnesium protoporphyrin IX methyltransferase activity0.00E+00
10GO:0046554: malate dehydrogenase (NADP+) activity0.00E+00
11GO:0009673: low-affinity phosphate transmembrane transporter activity0.00E+00
12GO:0052667: phosphomethylethanolamine N-methyltransferase activity0.00E+00
13GO:0045550: geranylgeranyl reductase activity0.00E+00
14GO:0009979: 16:0 monogalactosyldiacylglycerol desaturase activity0.00E+00
15GO:0050278: sedoheptulose-bisphosphatase activity0.00E+00
16GO:0008974: phosphoribulokinase activity0.00E+00
17GO:0016730: oxidoreductase activity, acting on iron-sulfur proteins as donors0.00E+00
18GO:0004760: serine-pyruvate transaminase activity0.00E+00
19GO:0019843: rRNA binding3.19E-07
20GO:0004332: fructose-bisphosphate aldolase activity4.07E-06
21GO:0018708: thiol S-methyltransferase activity7.32E-06
22GO:0031409: pigment binding8.10E-06
23GO:0016168: chlorophyll binding1.02E-05
24GO:0016491: oxidoreductase activity8.44E-05
25GO:0003735: structural constituent of ribosome3.54E-04
26GO:0008124: 4-alpha-hydroxytetrahydrobiopterin dehydratase activity4.05E-04
27GO:0008746: NAD(P)+ transhydrogenase activity4.05E-04
28GO:0003942: N-acetyl-gamma-glutamyl-phosphate reductase activity4.05E-04
29GO:0030794: (S)-coclaurine-N-methyltransferase activity4.05E-04
30GO:0090422: thiamine pyrophosphate transporter activity4.05E-04
31GO:0004013: adenosylhomocysteinase activity4.05E-04
32GO:0080132: fatty acid alpha-hydroxylase activity4.05E-04
33GO:0004325: ferrochelatase activity4.05E-04
34GO:0016717: oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water5.75E-04
35GO:0051287: NAD binding6.21E-04
36GO:0048038: quinone binding6.84E-04
37GO:0000234: phosphoethanolamine N-methyltransferase activity8.76E-04
38GO:0008883: glutamyl-tRNA reductase activity8.76E-04
39GO:0047746: chlorophyllase activity8.76E-04
40GO:0042389: omega-3 fatty acid desaturase activity8.76E-04
41GO:0010297: heteropolysaccharide binding8.76E-04
42GO:0009977: proton motive force dependent protein transmembrane transporter activity8.76E-04
43GO:0004047: aminomethyltransferase activity8.76E-04
44GO:0042132: fructose 1,6-bisphosphate 1-phosphatase activity8.76E-04
45GO:0008479: queuine tRNA-ribosyltransferase activity8.76E-04
46GO:0043024: ribosomal small subunit binding8.76E-04
47GO:0019172: glyoxalase III activity8.76E-04
48GO:0004802: transketolase activity8.76E-04
49GO:0036381: pyridoxal 5'-phosphate synthase (glutamine hydrolysing) activity8.76E-04
50GO:0008728: GTP diphosphokinase activity8.76E-04
51GO:0030234: enzyme regulator activity9.46E-04
52GO:0008168: methyltransferase activity1.23E-03
53GO:0005315: inorganic phosphate transmembrane transporter activity1.41E-03
54GO:0031072: heat shock protein binding1.41E-03
55GO:0004565: beta-galactosidase activity1.41E-03
56GO:0016742: hydroxymethyl-, formyl- and related transferase activity1.42E-03
57GO:0004367: glycerol-3-phosphate dehydrogenase [NAD+] activity1.42E-03
58GO:0004030: aldehyde dehydrogenase [NAD(P)+] activity1.42E-03
59GO:0008864: formyltetrahydrofolate deformylase activity1.42E-03
60GO:0016620: oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor1.42E-03
61GO:0010277: chlorophyllide a oxygenase [overall] activity1.42E-03
62GO:0008266: poly(U) RNA binding1.59E-03
63GO:0016628: oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor2.06E-03
64GO:0016851: magnesium chelatase activity2.06E-03
65GO:0004351: glutamate decarboxylase activity2.06E-03
66GO:0005528: FK506 binding2.20E-03
67GO:0001053: plastid sigma factor activity2.76E-03
68GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor2.76E-03
69GO:0004739: pyruvate dehydrogenase (acetyl-transferring) activity2.76E-03
70GO:0008453: alanine-glyoxylate transaminase activity2.76E-03
71GO:0016987: sigma factor activity2.76E-03
72GO:0009011: starch synthase activity2.76E-03
73GO:0015098: molybdate ion transmembrane transporter activity2.76E-03
74GO:0043495: protein anchor2.76E-03
75GO:0051537: 2 iron, 2 sulfur cluster binding3.14E-03
76GO:0003755: peptidyl-prolyl cis-trans isomerase activity3.46E-03
77GO:0003727: single-stranded RNA binding3.47E-03
78GO:0042802: identical protein binding4.15E-03
79GO:0009055: electron carrier activity4.32E-03
80GO:0042578: phosphoric ester hydrolase activity4.38E-03
81GO:0016615: malate dehydrogenase activity4.38E-03
82GO:0004029: aldehyde dehydrogenase (NAD) activity4.38E-03
83GO:0004130: cytochrome-c peroxidase activity4.38E-03
84GO:0004462: lactoylglutathione lyase activity4.38E-03
85GO:0045156: electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity5.27E-03
86GO:0004849: uridine kinase activity5.27E-03
87GO:0030060: L-malate dehydrogenase activity5.27E-03
88GO:0003886: DNA (cytosine-5-)-methyltransferase activity5.27E-03
89GO:0019899: enzyme binding6.23E-03
90GO:0004033: aldo-keto reductase (NADP) activity7.25E-03
91GO:0008135: translation factor activity, RNA binding8.32E-03
92GO:0008553: hydrogen-exporting ATPase activity, phosphorylative mechanism9.45E-03
93GO:0071949: FAD binding9.45E-03
94GO:0004028: 3-chloroallyl aldehyde dehydrogenase activity1.06E-02
95GO:0042803: protein homodimerization activity1.10E-02
96GO:0004222: metalloendopeptidase activity1.13E-02
97GO:0003746: translation elongation factor activity1.30E-02
98GO:0004089: carbonate dehydratase activity1.58E-02
99GO:0004364: glutathione transferase activity1.62E-02
100GO:0015293: symporter activity1.90E-02
101GO:0005507: copper ion binding1.91E-02
102GO:0051536: iron-sulfur cluster binding2.18E-02
103GO:0003690: double-stranded DNA binding2.36E-02
104GO:0016887: ATPase activity2.70E-02
105GO:0016760: cellulose synthase (UDP-forming) activity2.83E-02
106GO:0022891: substrate-specific transmembrane transporter activity2.83E-02
107GO:0008514: organic anion transmembrane transporter activity3.01E-02
108GO:0051082: unfolded protein binding3.24E-02
109GO:0008080: N-acetyltransferase activity3.55E-02
110GO:0046933: proton-transporting ATP synthase activity, rotational mechanism3.55E-02
111GO:0050662: coenzyme binding3.74E-02
112GO:0004872: receptor activity3.93E-02
113GO:0016762: xyloglucan:xyloglucosyl transferase activity4.12E-02
114GO:0004518: nuclease activity4.32E-02
115GO:0030170: pyridoxal phosphate binding4.49E-02
116GO:0016759: cellulose synthase activity4.73E-02
117GO:0005515: protein binding4.75E-02
118GO:0008565: protein transporter activity4.83E-02
119GO:0008483: transaminase activity4.93E-02
120GO:0016722: oxidoreductase activity, oxidizing metal ions4.93E-02
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Gene type



Gene DE type