Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT5G08340

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0006399: tRNA metabolic process0.00E+00
2GO:0006429: leucyl-tRNA aminoacylation0.00E+00
3GO:1905421: regulation of plant organ morphogenesis0.00E+00
4GO:0043488: regulation of mRNA stability0.00E+00
5GO:0017038: protein import0.00E+00
6GO:0046460: neutral lipid biosynthetic process0.00E+00
7GO:0030155: regulation of cell adhesion0.00E+00
8GO:0032194: ubiquinone biosynthetic process via 3,4-dihydroxy-5-polyprenylbenzoate0.00E+00
9GO:0031116: positive regulation of microtubule polymerization0.00E+00
10GO:0010422: regulation of brassinosteroid biosynthetic process0.00E+00
11GO:0018131: oxazole or thiazole biosynthetic process0.00E+00
12GO:0090071: negative regulation of ribosome biogenesis0.00E+00
13GO:0009157: deoxyribonucleoside monophosphate biosynthetic process0.00E+00
14GO:0042817: pyridoxal metabolic process0.00E+00
15GO:0006428: isoleucyl-tRNA aminoacylation0.00E+00
16GO:0042407: cristae formation0.00E+00
17GO:0007638: mechanosensory behavior0.00E+00
18GO:0046396: D-galacturonate metabolic process0.00E+00
19GO:1905177: tracheary element differentiation0.00E+00
20GO:0009658: chloroplast organization2.29E-12
21GO:0009657: plastid organization3.39E-05
22GO:0006415: translational termination9.85E-05
23GO:0090351: seedling development2.07E-04
24GO:1901259: chloroplast rRNA processing3.65E-04
25GO:0042372: phylloquinone biosynthetic process3.65E-04
26GO:0042547: cell wall modification involved in multidimensional cell growth4.70E-04
27GO:0042371: vitamin K biosynthetic process4.70E-04
28GO:2000021: regulation of ion homeostasis4.70E-04
29GO:1902458: positive regulation of stomatal opening4.70E-04
30GO:0005991: trehalose metabolic process4.70E-04
31GO:0048528: post-embryonic root development4.70E-04
32GO:0006419: alanyl-tRNA aminoacylation4.70E-04
33GO:0000476: maturation of 4.5S rRNA4.70E-04
34GO:0000967: rRNA 5'-end processing4.70E-04
35GO:0070509: calcium ion import4.70E-04
36GO:0071028: nuclear mRNA surveillance4.70E-04
37GO:0043266: regulation of potassium ion transport4.70E-04
38GO:0006353: DNA-templated transcription, termination5.86E-04
39GO:0070413: trehalose metabolism in response to stress5.86E-04
40GO:0032544: plastid translation7.14E-04
41GO:0071482: cellular response to light stimulus7.14E-04
42GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway7.77E-04
43GO:0000373: Group II intron splicing8.55E-04
44GO:0009220: pyrimidine ribonucleotide biosynthetic process1.01E-03
45GO:0034755: iron ion transmembrane transport1.01E-03
46GO:0006423: cysteinyl-tRNA aminoacylation1.01E-03
47GO:0006435: threonyl-tRNA aminoacylation1.01E-03
48GO:0031125: rRNA 3'-end processing1.01E-03
49GO:1903426: regulation of reactive oxygen species biosynthetic process1.01E-03
50GO:0071051: polyadenylation-dependent snoRNA 3'-end processing1.01E-03
51GO:0034470: ncRNA processing1.01E-03
52GO:0006739: NADP metabolic process1.01E-03
53GO:0034475: U4 snRNA 3'-end processing1.01E-03
54GO:0060359: response to ammonium ion1.01E-03
55GO:0007154: cell communication1.01E-03
56GO:1900865: chloroplast RNA modification1.01E-03
57GO:1900033: negative regulation of trichome patterning1.01E-03
58GO:0009793: embryo development ending in seed dormancy1.11E-03
59GO:0006782: protoporphyrinogen IX biosynthetic process1.17E-03
60GO:0009684: indoleacetic acid biosynthetic process1.35E-03
61GO:0009089: lysine biosynthetic process via diaminopimelate1.35E-03
62GO:0006352: DNA-templated transcription, initiation1.35E-03
63GO:0010027: thylakoid membrane organization1.44E-03
64GO:0045037: protein import into chloroplast stroma1.55E-03
65GO:0015940: pantothenate biosynthetic process1.65E-03
66GO:0001578: microtubule bundle formation1.65E-03
67GO:0045493: xylan catabolic process1.65E-03
68GO:0043157: response to cation stress1.65E-03
69GO:0030261: chromosome condensation1.65E-03
70GO:0009627: systemic acquired resistance1.65E-03
71GO:0016075: rRNA catabolic process1.65E-03
72GO:0034427: nuclear-transcribed mRNA catabolic process, exonucleolytic, 3'-5'1.65E-03
73GO:0048281: inflorescence morphogenesis1.65E-03
74GO:0006954: inflammatory response1.65E-03
75GO:0010623: programmed cell death involved in cell development1.65E-03
76GO:2000012: regulation of auxin polar transport1.76E-03
77GO:0015995: chlorophyll biosynthetic process1.77E-03
78GO:0010020: chloroplast fission1.98E-03
79GO:0070588: calcium ion transmembrane transport2.22E-03
80GO:0043572: plastid fission2.39E-03
81GO:0006164: purine nucleotide biosynthetic process2.39E-03
82GO:0031048: chromatin silencing by small RNA2.39E-03
83GO:0010148: transpiration2.39E-03
84GO:2001141: regulation of RNA biosynthetic process2.39E-03
85GO:0016556: mRNA modification2.39E-03
86GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly2.39E-03
87GO:0007231: osmosensory signaling pathway2.39E-03
88GO:0009102: biotin biosynthetic process2.39E-03
89GO:0051639: actin filament network formation2.39E-03
90GO:0009226: nucleotide-sugar biosynthetic process2.39E-03
91GO:0010239: chloroplast mRNA processing2.39E-03
92GO:0008615: pyridoxine biosynthetic process2.39E-03
93GO:0019048: modulation by virus of host morphology or physiology2.39E-03
94GO:0043433: negative regulation of sequence-specific DNA binding transcription factor activity2.39E-03
95GO:0005992: trehalose biosynthetic process2.75E-03
96GO:0006418: tRNA aminoacylation for protein translation3.04E-03
97GO:0051567: histone H3-K9 methylation3.22E-03
98GO:0010508: positive regulation of autophagy3.22E-03
99GO:0007020: microtubule nucleation3.22E-03
100GO:0009165: nucleotide biosynthetic process3.22E-03
101GO:0048629: trichome patterning3.22E-03
102GO:0010109: regulation of photosynthesis3.22E-03
103GO:0051764: actin crosslink formation3.22E-03
104GO:0033500: carbohydrate homeostasis3.22E-03
105GO:0051322: anaphase3.22E-03
106GO:0022622: root system development3.22E-03
107GO:0071483: cellular response to blue light3.22E-03
108GO:0006734: NADH metabolic process3.22E-03
109GO:0044205: 'de novo' UMP biosynthetic process3.22E-03
110GO:0006730: one-carbon metabolic process3.66E-03
111GO:0045490: pectin catabolic process4.06E-03
112GO:0045038: protein import into chloroplast thylakoid membrane4.13E-03
113GO:0016131: brassinosteroid metabolic process4.13E-03
114GO:0010158: abaxial cell fate specification4.13E-03
115GO:0046785: microtubule polymerization4.13E-03
116GO:0006465: signal peptide processing4.13E-03
117GO:0032543: mitochondrial translation4.13E-03
118GO:0010236: plastoquinone biosynthetic process4.13E-03
119GO:0009789: positive regulation of abscisic acid-activated signaling pathway4.71E-03
120GO:0009664: plant-type cell wall organization5.06E-03
121GO:0032973: amino acid export5.11E-03
122GO:0009228: thiamine biosynthetic process5.11E-03
123GO:0009959: negative gravitropism5.11E-03
124GO:0006655: phosphatidylglycerol biosynthetic process5.11E-03
125GO:0006139: nucleobase-containing compound metabolic process5.11E-03
126GO:0016554: cytidine to uridine editing5.11E-03
127GO:0016458: gene silencing5.11E-03
128GO:0009958: positive gravitropism5.49E-03
129GO:0009646: response to absence of light5.91E-03
130GO:0034389: lipid particle organization6.17E-03
131GO:0080086: stamen filament development6.17E-03
132GO:0009648: photoperiodism6.17E-03
133GO:0009955: adaxial/abaxial pattern specification6.17E-03
134GO:0017148: negative regulation of translation6.17E-03
135GO:0046835: carbohydrate phosphorylation6.17E-03
136GO:0006207: 'de novo' pyrimidine nucleobase biosynthetic process7.30E-03
137GO:0010103: stomatal complex morphogenesis7.30E-03
138GO:0032880: regulation of protein localization7.30E-03
139GO:0009772: photosynthetic electron transport in photosystem II7.30E-03
140GO:0043090: amino acid import7.30E-03
141GO:0070370: cellular heat acclimation7.30E-03
142GO:0010444: guard mother cell differentiation7.30E-03
143GO:0010050: vegetative phase change7.30E-03
144GO:0010196: nonphotochemical quenching7.30E-03
145GO:0006400: tRNA modification7.30E-03
146GO:2000070: regulation of response to water deprivation8.49E-03
147GO:0042255: ribosome assembly8.49E-03
148GO:0046620: regulation of organ growth8.49E-03
149GO:0000105: histidine biosynthetic process8.49E-03
150GO:0052543: callose deposition in cell wall8.49E-03
151GO:0048564: photosystem I assembly8.49E-03
152GO:0009850: auxin metabolic process8.49E-03
153GO:0006605: protein targeting8.49E-03
154GO:0010078: maintenance of root meristem identity8.49E-03
155GO:0009704: de-etiolation8.49E-03
156GO:0043562: cellular response to nitrogen levels9.75E-03
157GO:0009932: cell tip growth9.75E-03
158GO:0001558: regulation of cell growth9.75E-03
159GO:0009827: plant-type cell wall modification9.75E-03
160GO:0080167: response to karrikin1.10E-02
161GO:0009821: alkaloid biosynthetic process1.11E-02
162GO:0080144: amino acid homeostasis1.11E-02
163GO:0006098: pentose-phosphate shunt1.11E-02
164GO:0006783: heme biosynthetic process1.11E-02
165GO:0019432: triglyceride biosynthetic process1.11E-02
166GO:0005982: starch metabolic process1.25E-02
167GO:0043067: regulation of programmed cell death1.25E-02
168GO:0006779: porphyrin-containing compound biosynthetic process1.25E-02
169GO:0009862: systemic acquired resistance, salicylic acid mediated signaling pathway1.25E-02
170GO:0030422: production of siRNA involved in RNA interference1.39E-02
171GO:0045036: protein targeting to chloroplast1.39E-02
172GO:0006949: syncytium formation1.39E-02
173GO:0006259: DNA metabolic process1.39E-02
174GO:0009790: embryo development1.41E-02
175GO:0048527: lateral root development1.49E-02
176GO:0010015: root morphogenesis1.54E-02
177GO:0019684: photosynthesis, light reaction1.54E-02
178GO:0006265: DNA topological change1.54E-02
179GO:0006816: calcium ion transport1.54E-02
180GO:1903507: negative regulation of nucleic acid-templated transcription1.54E-02
181GO:0006879: cellular iron ion homeostasis1.54E-02
182GO:0006413: translational initiation1.60E-02
183GO:0016024: CDP-diacylglycerol biosynthetic process1.70E-02
184GO:0010582: floral meristem determinacy1.70E-02
185GO:0005975: carbohydrate metabolic process1.70E-02
186GO:0006468: protein phosphorylation1.70E-02
187GO:0050826: response to freezing1.86E-02
188GO:0006094: gluconeogenesis1.86E-02
189GO:0009767: photosynthetic electron transport chain1.86E-02
190GO:0010588: cotyledon vascular tissue pattern formation1.86E-02
191GO:0071555: cell wall organization1.92E-02
192GO:0010207: photosystem II assembly2.03E-02
193GO:0048467: gynoecium development2.03E-02
194GO:0008380: RNA splicing2.19E-02
195GO:0010030: positive regulation of seed germination2.20E-02
196GO:0071732: cellular response to nitric oxide2.20E-02
197GO:0006071: glycerol metabolic process2.38E-02
198GO:0006833: water transport2.38E-02
199GO:0000162: tryptophan biosynthetic process2.38E-02
200GO:0009965: leaf morphogenesis2.38E-02
201GO:0006855: drug transmembrane transport2.47E-02
202GO:0030150: protein import into mitochondrial matrix2.56E-02
203GO:0007010: cytoskeleton organization2.56E-02
204GO:0009944: polarity specification of adaxial/abaxial axis2.56E-02
205GO:0009116: nucleoside metabolic process2.56E-02
206GO:0051017: actin filament bundle assembly2.56E-02
207GO:0043622: cortical microtubule organization2.74E-02
208GO:0006825: copper ion transport2.74E-02
209GO:0051302: regulation of cell division2.74E-02
210GO:0006364: rRNA processing2.86E-02
211GO:0048511: rhythmic process2.94E-02
212GO:0006306: DNA methylation2.94E-02
213GO:0031348: negative regulation of defense response3.13E-02
214GO:0009814: defense response, incompatible interaction3.13E-02
215GO:2000022: regulation of jasmonic acid mediated signaling pathway3.13E-02
216GO:0006417: regulation of translation3.16E-02
217GO:0009734: auxin-activated signaling pathway3.27E-02
218GO:0071369: cellular response to ethylene stimulus3.33E-02
219GO:0001944: vasculature development3.33E-02
220GO:0006012: galactose metabolic process3.33E-02
221GO:0010082: regulation of root meristem growth3.33E-02
222GO:0009831: plant-type cell wall modification involved in multidimensional cell growth3.33E-02
223GO:0048367: shoot system development3.49E-02
224GO:0009306: protein secretion3.54E-02
225GO:0010089: xylem development3.54E-02
226GO:0008284: positive regulation of cell proliferation3.74E-02
227GO:0008033: tRNA processing3.96E-02
228GO:0034220: ion transmembrane transport3.96E-02
229GO:0010087: phloem or xylem histogenesis3.96E-02
230GO:0042631: cellular response to water deprivation3.96E-02
231GO:0000271: polysaccharide biosynthetic process3.96E-02
232GO:0080022: primary root development3.96E-02
233GO:0010197: polar nucleus fusion4.17E-02
234GO:0010182: sugar mediated signaling pathway4.17E-02
235GO:0006342: chromatin silencing4.17E-02
236GO:0045489: pectin biosynthetic process4.17E-02
237GO:0006662: glycerol ether metabolic process4.17E-02
238GO:0006396: RNA processing4.18E-02
239GO:0042752: regulation of circadian rhythm4.39E-02
240GO:0007059: chromosome segregation4.39E-02
241GO:0008654: phospholipid biosynthetic process4.62E-02
242GO:0009851: auxin biosynthetic process4.62E-02
243GO:0048825: cotyledon development4.62E-02
244GO:0016132: brassinosteroid biosynthetic process4.85E-02
245GO:0000302: response to reactive oxygen species4.85E-02
RankGO TermAdjusted P value
1GO:0008756: o-succinylbenzoate-CoA ligase activity0.00E+00
2GO:0004056: argininosuccinate lyase activity0.00E+00
3GO:0004822: isoleucine-tRNA ligase activity0.00E+00
4GO:0015267: channel activity0.00E+00
5GO:0003949: 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide isomerase activity0.00E+00
6GO:0019136: deoxynucleoside kinase activity0.00E+00
7GO:0004076: biotin synthase activity0.00E+00
8GO:0003937: IMP cyclohydrolase activity0.00E+00
9GO:0061634: alpha-D-xyloside xylohydrolase0.00E+00
10GO:0043864: indoleacetamide hydrolase activity0.00E+00
11GO:0047912: galacturonokinase activity0.00E+00
12GO:0004588: orotate phosphoribosyltransferase activity0.00E+00
13GO:0004590: orotidine-5'-phosphate decarboxylase activity0.00E+00
14GO:0080176: xyloglucan 1,6-alpha-xylosidase activity0.00E+00
15GO:0004643: phosphoribosylaminoimidazolecarboxamide formyltransferase activity0.00E+00
16GO:0004823: leucine-tRNA ligase activity0.00E+00
17GO:0046428: 1,4-dihydroxy-2-naphthoate octaprenyltransferase activity0.00E+00
18GO:0002161: aminoacyl-tRNA editing activity3.33E-05
19GO:0030570: pectate lyase activity3.52E-05
20GO:0003747: translation release factor activity4.63E-05
21GO:0016851: magnesium chelatase activity7.17E-05
22GO:0016149: translation release factor activity, codon specific7.17E-05
23GO:0016829: lyase activity1.02E-04
24GO:0001053: plastid sigma factor activity1.25E-04
25GO:0016987: sigma factor activity1.25E-04
26GO:0004040: amidase activity1.92E-04
27GO:0030785: [ribulose-bisphosphate carboxylase]-lysine N-methyltransferase activity4.70E-04
28GO:0052857: NADPHX epimerase activity4.70E-04
29GO:0010285: L,L-diaminopimelate aminotransferase activity4.70E-04
30GO:0004853: uroporphyrinogen decarboxylase activity4.70E-04
31GO:0052856: NADHX epimerase activity4.70E-04
32GO:0042286: glutamate-1-semialdehyde 2,1-aminomutase activity4.70E-04
33GO:0050139: nicotinate-N-glucosyltransferase activity4.70E-04
34GO:0005227: calcium activated cation channel activity4.70E-04
35GO:0004733: pyridoxamine-phosphate oxidase activity4.70E-04
36GO:0003864: 3-methyl-2-oxobutanoate hydroxymethyltransferase activity4.70E-04
37GO:0050567: glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity4.70E-04
38GO:0004813: alanine-tRNA ligase activity4.70E-04
39GO:0004008: copper-exporting ATPase activity4.70E-04
40GO:0043022: ribosome binding5.86E-04
41GO:0004326: tetrahydrofolylpolyglutamate synthase activity1.01E-03
42GO:0050362: L-tryptophan:2-oxoglutarate aminotransferase activity1.01E-03
43GO:0009977: proton motive force dependent protein transmembrane transporter activity1.01E-03
44GO:0080097: L-tryptophan:pyruvate aminotransferase activity1.01E-03
45GO:0004817: cysteine-tRNA ligase activity1.01E-03
46GO:0004829: threonine-tRNA ligase activity1.01E-03
47GO:0008839: 4-hydroxy-tetrahydrodipicolinate reductase1.01E-03
48GO:0005525: GTP binding1.48E-03
49GO:0000049: tRNA binding1.55E-03
50GO:0004557: alpha-galactosidase activity1.65E-03
51GO:0052692: raffinose alpha-galactosidase activity1.65E-03
52GO:0015462: ATPase-coupled protein transmembrane transporter activity1.65E-03
53GO:0070330: aromatase activity1.65E-03
54GO:0005262: calcium channel activity1.76E-03
55GO:0042973: glucan endo-1,3-beta-D-glucosidase activity1.98E-03
56GO:0004222: metalloendopeptidase activity2.29E-03
57GO:0035197: siRNA binding2.39E-03
58GO:0043023: ribosomal large subunit binding2.39E-03
59GO:0001872: (1->3)-beta-D-glucan binding2.39E-03
60GO:0003825: alpha,alpha-trehalose-phosphate synthase (UDP-forming) activity2.39E-03
61GO:0046556: alpha-L-arabinofuranosidase activity3.22E-03
62GO:0004335: galactokinase activity3.22E-03
63GO:0004659: prenyltransferase activity3.22E-03
64GO:0016810: hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds3.22E-03
65GO:0004045: aminoacyl-tRNA hydrolase activity3.22E-03
66GO:0009044: xylan 1,4-beta-xylosidase activity3.22E-03
67GO:0042277: peptide binding3.22E-03
68GO:0019199: transmembrane receptor protein kinase activity3.22E-03
69GO:0004176: ATP-dependent peptidase activity3.34E-03
70GO:0003723: RNA binding4.06E-03
71GO:0016846: carbon-sulfur lyase activity4.13E-03
72GO:0018685: alkane 1-monooxygenase activity4.13E-03
73GO:0016773: phosphotransferase activity, alcohol group as acceptor4.13E-03
74GO:0043621: protein self-association4.18E-03
75GO:0004812: aminoacyl-tRNA ligase activity4.71E-03
76GO:0042578: phosphoric ester hydrolase activity5.11E-03
77GO:2001070: starch binding5.11E-03
78GO:0004605: phosphatidate cytidylyltransferase activity5.11E-03
79GO:0004332: fructose-bisphosphate aldolase activity5.11E-03
80GO:0016208: AMP binding5.11E-03
81GO:0004723: calcium-dependent protein serine/threonine phosphatase activity6.17E-03
82GO:0003730: mRNA 3'-UTR binding6.17E-03
83GO:0004144: diacylglycerol O-acyltransferase activity6.17E-03
84GO:0019899: enzyme binding7.30E-03
85GO:0016788: hydrolase activity, acting on ester bonds8.13E-03
86GO:0016791: phosphatase activity8.24E-03
87GO:0008237: metallopeptidase activity8.76E-03
88GO:0008483: transaminase activity8.76E-03
89GO:0016597: amino acid binding9.30E-03
90GO:0005375: copper ion transmembrane transporter activity9.75E-03
91GO:0003918: DNA topoisomerase type II (ATP-hydrolyzing) activity9.75E-03
92GO:0030247: polysaccharide binding1.16E-02
93GO:0019843: rRNA binding1.16E-02
94GO:0016844: strictosidine synthase activity1.25E-02
95GO:0005381: iron ion transmembrane transporter activity1.25E-02
96GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity1.29E-02
97GO:0015238: drug transmembrane transporter activity1.36E-02
98GO:0004805: trehalose-phosphatase activity1.39E-02
99GO:0016614: oxidoreductase activity, acting on CH-OH group of donors1.49E-02
100GO:0008327: methyl-CpG binding1.54E-02
101GO:0004675: transmembrane receptor protein serine/threonine kinase activity1.60E-02
102GO:0004521: endoribonuclease activity1.70E-02
103GO:0008017: microtubule binding1.85E-02
104GO:0015266: protein channel activity1.86E-02
105GO:0015662: ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism1.86E-02
106GO:0004089: carbonate dehydratase activity1.86E-02
107GO:0000175: 3'-5'-exoribonuclease activity1.86E-02
108GO:0004565: beta-galactosidase activity1.86E-02
109GO:0003924: GTPase activity1.97E-02
110GO:0008083: growth factor activity2.03E-02
111GO:0003743: translation initiation factor activity2.13E-02
112GO:0004519: endonuclease activity2.23E-02
113GO:0102338: 3-oxo-lignoceronyl-CoA synthase activity2.38E-02
114GO:0102336: 3-oxo-arachidoyl-CoA synthase activity2.38E-02
115GO:0102337: 3-oxo-cerotoyl-CoA synthase activity2.38E-02
116GO:0005524: ATP binding2.45E-02
117GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds2.47E-02
118GO:0003714: transcription corepressor activity2.56E-02
119GO:0005528: FK506 binding2.56E-02
120GO:0015079: potassium ion transmembrane transporter activity2.74E-02
121GO:0003899: DNA-directed 5'-3' RNA polymerase activity2.86E-02
122GO:0008408: 3'-5' exonuclease activity2.94E-02
123GO:0047262: polygalacturonate 4-alpha-galacturonosyltransferase activity3.13E-02
124GO:0003727: single-stranded RNA binding3.54E-02
125GO:0047134: protein-disulfide reductase activity3.74E-02
126GO:0008536: Ran GTPase binding4.17E-02
127GO:0010181: FMN binding4.39E-02
128GO:0004791: thioredoxin-disulfide reductase activity4.39E-02
129GO:0050662: coenzyme binding4.39E-02
130GO:0052689: carboxylic ester hydrolase activity4.46E-02
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Gene type



Gene DE type