co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT5G06060

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0016553: base conversion or substitution editing	0.00E+00
2	GO:0090470: shoot organ boundary specification	0.00E+00
3	GO:0005996: monosaccharide metabolic process	0.00E+00
4	GO:0019265: glycine biosynthetic process, by transamination of glyoxylate	0.00E+00
5	GO:0046471: phosphatidylglycerol metabolic process	0.00E+00
6	GO:0034337: RNA folding	0.00E+00
7	GO:1901918: negative regulation of exoribonuclease activity	0.00E+00
8	GO:0015995: chlorophyll biosynthetic process	6.69E-12
9	GO:0015979: photosynthesis	1.60E-11
10	GO:0009773: photosynthetic electron transport in photosystem I	1.41E-07
11	GO:0006094: gluconeogenesis	3.16E-07
12	GO:0010207: photosystem II assembly	4.53E-07
13	GO:0055114: oxidation-reduction process	3.85E-06
14	GO:0019252: starch biosynthetic process	1.13E-05
15	GO:0030388: fructose 1,6-bisphosphate metabolic process	1.48E-05
16	GO:0009658: chloroplast organization	3.88E-05
17	GO:0006000: fructose metabolic process	4.92E-05
18	GO:0009735: response to cytokinin	5.51E-05
19	GO:0032544: plastid translation	5.67E-05
20	GO:0071482: cellular response to light stimulus	5.67E-05
21	GO:0006783: heme biosynthetic process	7.64E-05
22	GO:0006810: transport	8.61E-05
23	GO:2001141: regulation of RNA biosynthetic process	1.04E-04
24	GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly	1.04E-04
25	GO:0010600: regulation of auxin biosynthetic process	1.78E-04
26	GO:0010021: amylopectin biosynthetic process	1.78E-04
27	GO:0019253: reductive pentose-phosphate cycle	2.76E-04
28	GO:0010027: thylakoid membrane organization	3.29E-04
29	GO:0006636: unsaturated fatty acid biosynthetic process	3.74E-04
30	GO:0042549: photosystem II stabilization	3.80E-04
31	GO:0009768: photosynthesis, light harvesting in photosystem I	4.90E-04
32	GO:0018298: protein-chromophore linkage	5.04E-04
33	GO:0010244: response to low fluence blue light stimulus by blue low-fluence system	5.05E-04
34	GO:0009854: oxidative photosynthetic carbon pathway	5.05E-04
35	GO:0015969: guanosine tetraphosphate metabolic process	5.83E-04
36	GO:0046467: membrane lipid biosynthetic process	5.83E-04
37	GO:1902478: negative regulation of defense response to bacterium, incompatible interaction	5.83E-04
38	GO:0043489: RNA stabilization	5.83E-04
39	GO:1904966: positive regulation of vitamin E biosynthetic process	5.83E-04
40	GO:0043953: protein transport by the Tat complex	5.83E-04
41	GO:0000481: maturation of 5S rRNA	5.83E-04
42	GO:0010426: DNA methylation on cytosine within a CHH sequence	5.83E-04
43	GO:0015801: aromatic amino acid transport	5.83E-04
44	GO:1904964: positive regulation of phytol biosynthetic process	5.83E-04
45	GO:0065002: intracellular protein transmembrane transport	5.83E-04
46	GO:0051775: response to redox state	5.83E-04
47	GO:0071277: cellular response to calcium ion	5.83E-04
48	GO:0043087: regulation of GTPase activity	5.83E-04
49	GO:0071461: cellular response to redox state	5.83E-04
50	GO:0046167: glycerol-3-phosphate biosynthetic process	5.83E-04
51	GO:0009645: response to low light intensity stimulus	6.46E-04
52	GO:0032259: methylation	8.01E-04
53	GO:0010928: regulation of auxin mediated signaling pathway	8.05E-04
54	GO:0009704: de-etiolation	8.05E-04
55	GO:0048564: photosystem I assembly	8.05E-04
56	GO:0006002: fructose 6-phosphate metabolic process	9.78E-04
57	GO:0006098: pentose-phosphate shunt	1.17E-03
58	GO:0006754: ATP biosynthetic process	1.17E-03
59	GO:0080005: photosystem stoichiometry adjustment	1.25E-03
60	GO:1902326: positive regulation of chlorophyll biosynthetic process	1.25E-03
61	GO:0006650: glycerophospholipid metabolic process	1.25E-03
62	GO:0008616: queuosine biosynthetic process	1.25E-03
63	GO:0006729: tetrahydrobiopterin biosynthetic process	1.25E-03
64	GO:0010275: NAD(P)H dehydrogenase complex assembly	1.25E-03
65	GO:0035304: regulation of protein dephosphorylation	1.25E-03
66	GO:0010205: photoinhibition	1.38E-03
67	GO:0006779: porphyrin-containing compound biosynthetic process	1.38E-03
68	GO:0006782: protoporphyrinogen IX biosynthetic process	1.61E-03
69	GO:0006352: DNA-templated transcription, initiation	1.87E-03
70	GO:0018119: peptidyl-cysteine S-nitrosylation	1.87E-03
71	GO:0019684: photosynthesis, light reaction	1.87E-03
72	GO:0090391: granum assembly	2.06E-03
73	GO:0006518: peptide metabolic process	2.06E-03
74	GO:0034051: negative regulation of plant-type hypersensitive response	2.06E-03
75	GO:0046168: glycerol-3-phosphate catabolic process	2.06E-03
76	GO:0044375: regulation of peroxisome size	2.06E-03
77	GO:0005977: glycogen metabolic process	2.06E-03
78	GO:0006096: glycolytic process	2.19E-03
79	GO:0009767: photosynthetic electron transport chain	2.43E-03
80	GO:0005986: sucrose biosynthetic process	2.43E-03
81	GO:0033014: tetrapyrrole biosynthetic process	3.00E-03
82	GO:0010731: protein glutathionylation	3.00E-03
83	GO:0006072: glycerol-3-phosphate metabolic process	3.00E-03
84	GO:1901332: negative regulation of lateral root development	3.00E-03
85	GO:0080158: chloroplast ribulose bisphosphate carboxylase complex biogenesis	3.00E-03
86	GO:0010371: regulation of gibberellin biosynthetic process	3.00E-03
87	GO:0009152: purine ribonucleotide biosynthetic process	3.00E-03
88	GO:0046653: tetrahydrofolate metabolic process	3.00E-03
89	GO:0006107: oxaloacetate metabolic process	3.00E-03
90	GO:0009052: pentose-phosphate shunt, non-oxidative branch	3.00E-03
91	GO:0007031: peroxisome organization	3.08E-03
92	GO:0019762: glucosinolate catabolic process	3.44E-03
93	GO:0042254: ribosome biogenesis	3.63E-03
94	GO:0007568: aging	3.70E-03
95	GO:0045727: positive regulation of translation	4.04E-03
96	GO:0015994: chlorophyll metabolic process	4.04E-03
97	GO:0006536: glutamate metabolic process	4.04E-03
98	GO:0006546: glycine catabolic process	4.04E-03
99	GO:0006734: NADH metabolic process	4.04E-03
100	GO:0009765: photosynthesis, light harvesting	4.04E-03
101	GO:0009853: photorespiration	4.16E-03
102	GO:0009409: response to cold	4.29E-03
103	GO:0034599: cellular response to oxidative stress	4.40E-03
104	GO:0031408: oxylipin biosynthetic process	4.64E-03
105	GO:0019748: secondary metabolic process	5.08E-03
106	GO:0006564: L-serine biosynthetic process	5.19E-03
107	GO:0006656: phosphatidylcholine biosynthetic process	5.19E-03
108	GO:0043097: pyrimidine nucleoside salvage	5.19E-03
109	GO:0009107: lipoate biosynthetic process	5.19E-03
110	GO:0000304: response to singlet oxygen	5.19E-03
111	GO:0006465: signal peptide processing	5.19E-03
112	GO:0010114: response to red light	5.76E-03
113	GO:0006633: fatty acid biosynthetic process	5.82E-03
114	GO:0009920: cell plate formation involved in plant-type cell wall biogenesis	6.43E-03
115	GO:0006206: pyrimidine nucleobase metabolic process	6.43E-03
116	GO:0006014: D-ribose metabolic process	6.43E-03
117	GO:0050665: hydrogen peroxide biosynthetic process	6.43E-03
118	GO:0006655: phosphatidylglycerol biosynthetic process	6.43E-03
119	GO:0006412: translation	6.89E-03
120	GO:0042631: cellular response to water deprivation	7.09E-03
121	GO:0045926: negative regulation of growth	7.77E-03
122	GO:0010189: vitamin E biosynthetic process	7.77E-03
123	GO:1901259: chloroplast rRNA processing	7.77E-03
124	GO:0000054: ribosomal subunit export from nucleus	7.77E-03
125	GO:0006364: rRNA processing	8.44E-03
126	GO:1900057: positive regulation of leaf senescence	9.20E-03
127	GO:0010196: nonphotochemical quenching	9.20E-03
128	GO:0006400: tRNA modification	9.20E-03
129	GO:0010161: red light signaling pathway	9.20E-03
130	GO:0009772: photosynthetic electron transport in photosystem II	9.20E-03
131	GO:0032502: developmental process	1.01E-02
132	GO:0005978: glycogen biosynthetic process	1.07E-02
133	GO:0009690: cytokinin metabolic process	1.07E-02
134	GO:0032508: DNA duplex unwinding	1.07E-02
135	GO:0042255: ribosome assembly	1.07E-02
136	GO:0006353: DNA-templated transcription, termination	1.07E-02
137	GO:0016559: peroxisome fission	1.07E-02
138	GO:0006526: arginine biosynthetic process	1.23E-02
139	GO:0009657: plastid organization	1.23E-02
140	GO:0009932: cell tip growth	1.23E-02
141	GO:0090305: nucleic acid phosphodiester bond hydrolysis	1.40E-02
142	GO:0090333: regulation of stomatal closure	1.40E-02
143	GO:0005975: carbohydrate metabolic process	1.42E-02
144	GO:0005982: starch metabolic process	1.58E-02
145	GO:0010411: xyloglucan metabolic process	1.62E-02
146	GO:0006535: cysteine biosynthetic process from serine	1.76E-02
147	GO:0043069: negative regulation of programmed cell death	1.76E-02
148	GO:0008285: negative regulation of cell proliferation	1.95E-02
149	GO:0000272: polysaccharide catabolic process	1.95E-02
150	GO:0006415: translational termination	1.95E-02
151	GO:0010218: response to far red light	1.99E-02
152	GO:0016024: CDP-diacylglycerol biosynthetic process	2.15E-02
153	GO:0016051: carbohydrate biosynthetic process	2.29E-02
154	GO:0009637: response to blue light	2.29E-02
155	GO:0006108: malate metabolic process	2.36E-02
156	GO:0006807: nitrogen compound metabolic process	2.36E-02
157	GO:0018107: peptidyl-threonine phosphorylation	2.36E-02
158	GO:0009725: response to hormone	2.36E-02
159	GO:0034605: cellular response to heat	2.57E-02
160	GO:0009266: response to temperature stimulus	2.57E-02
161	GO:0005985: sucrose metabolic process	2.79E-02
162	GO:0006833: water transport	3.01E-02
163	GO:0042546: cell wall biogenesis	3.07E-02
164	GO:0009644: response to high light intensity	3.19E-02
165	GO:0019344: cysteine biosynthetic process	3.24E-02
166	GO:0009636: response to toxic substance	3.32E-02
167	GO:0007017: microtubule-based process	3.48E-02
168	GO:0010073: meristem maintenance	3.48E-02
169	GO:0046686: response to cadmium ion	3.54E-02
170	GO:0042742: defense response to bacterium	3.58E-02
171	GO:0006306: DNA methylation	3.72E-02
172	GO:0003333: amino acid transmembrane transport	3.72E-02
173	GO:0048511: rhythmic process	3.72E-02
174	GO:0010431: seed maturation	3.72E-02
175	GO:0061077: chaperone-mediated protein folding	3.72E-02
176	GO:0010017: red or far-red light signaling pathway	3.97E-02
177	GO:0016226: iron-sulfur cluster assembly	3.97E-02
178	GO:0030433: ubiquitin-dependent ERAD pathway	3.97E-02
179	GO:0009585: red, far-red light phototransduction	3.97E-02
180	GO:0035428: hexose transmembrane transport	3.97E-02
181	GO:0007005: mitochondrion organization	3.97E-02
182	GO:0080092: regulation of pollen tube growth	3.97E-02
183	GO:0009693: ethylene biosynthetic process	4.22E-02
184	GO:0009625: response to insect	4.22E-02
185	GO:0010227: floral organ abscission	4.22E-02
186	GO:0019722: calcium-mediated signaling	4.48E-02
187	GO:0009306: protein secretion	4.48E-02
188	GO:0009561: megagametogenesis	4.48E-02
189	GO:0006817: phosphate ion transport	4.48E-02

Rank	GO Term	Adjusted P value
1	GO:0052667: phosphomethylethanolamine N-methyltransferase activity	0.00E+00
2	GO:0045550: geranylgeranyl reductase activity	0.00E+00
3	GO:0009673: low-affinity phosphate transmembrane transporter activity	0.00E+00
4	GO:0009979: 16:0 monogalactosyldiacylglycerol desaturase activity	0.00E+00
5	GO:0090711: FMN hydrolase activity	0.00E+00
6	GO:0050278: sedoheptulose-bisphosphatase activity	0.00E+00
7	GO:0008974: phosphoribulokinase activity	0.00E+00
8	GO:0051744: 3,8-divinyl protochlorophyllide a 8-vinyl reductase activity	0.00E+00
9	GO:0016730: oxidoreductase activity, acting on iron-sulfur proteins as donors	0.00E+00
10	GO:0004760: serine-pyruvate transaminase activity	0.00E+00
11	GO:0004314: [acyl-carrier-protein] S-malonyltransferase activity	0.00E+00
12	GO:0008465: glycerate dehydrogenase activity	0.00E+00
13	GO:0046408: chlorophyll synthetase activity	0.00E+00
14	GO:0008942: nitrite reductase [NAD(P)H] activity	0.00E+00
15	GO:0102193: protein-ribulosamine 3-kinase activity	0.00E+00
16	GO:0050281: serine-glyoxylate transaminase activity	0.00E+00
17	GO:0052637: delta 3-trans-hexadecenoic acid phosphatidylglycerol desaturase activity	0.00E+00
18	GO:0046863: ribulose-1,5-bisphosphate carboxylase/oxygenase activator activity	0.00E+00
19	GO:0033728: divinyl chlorophyllide a 8-vinyl-reductase activity	0.00E+00
20	GO:0019144: ADP-sugar diphosphatase activity	0.00E+00
21	GO:0046406: magnesium protoporphyrin IX methyltransferase activity	0.00E+00
22	GO:0046554: malate dehydrogenase (NADP+) activity	0.00E+00
23	GO:0019843: rRNA binding	1.43E-08
24	GO:0004332: fructose-bisphosphate aldolase activity	1.05E-05
25	GO:0016491: oxidoreductase activity	1.29E-05
26	GO:0048038: quinone binding	1.35E-05
27	GO:0042132: fructose 1,6-bisphosphate 1-phosphatase activity	1.48E-05
28	GO:0018708: thiol S-methyltransferase activity	1.48E-05
29	GO:0008266: poly(U) RNA binding	1.55E-05
30	GO:0016851: magnesium chelatase activity	1.04E-04
31	GO:0016987: sigma factor activity	1.78E-04
32	GO:0001053: plastid sigma factor activity	1.78E-04
33	GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor	1.78E-04
34	GO:0031072: heat shock protein binding	2.33E-04
35	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	2.43E-04
36	GO:0003735: structural constituent of ribosome	2.85E-04
37	GO:0016168: chlorophyll binding	3.61E-04
38	GO:0031409: pigment binding	3.74E-04
39	GO:0005528: FK506 binding	4.30E-04
40	GO:0080042: ADP-glucose pyrophosphohydrolase activity	5.83E-04
41	GO:0080132: fatty acid alpha-hydroxylase activity	5.83E-04
42	GO:0010242: oxygen evolving activity	5.83E-04
43	GO:0004325: ferrochelatase activity	5.83E-04
44	GO:0008746: NAD(P)+ transhydrogenase activity	5.83E-04
45	GO:0004853: uroporphyrinogen decarboxylase activity	5.83E-04
46	GO:0008124: 4-alpha-hydroxytetrahydrobiopterin dehydratase activity	5.83E-04
47	GO:0008886: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (non-phosphorylating) activity	5.83E-04
48	GO:0003942: N-acetyl-gamma-glutamyl-phosphate reductase activity	5.83E-04
49	GO:0016717: oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water	9.78E-04
50	GO:0019172: glyoxalase III activity	1.25E-03
51	GO:0019156: isoamylase activity	1.25E-03
52	GO:0043024: ribosomal small subunit binding	1.25E-03
53	GO:0047158: sinapoylglucose-sinapoylglucose O-sinapoyltransferase activity	1.25E-03
54	GO:0008728: GTP diphosphokinase activity	1.25E-03
55	GO:0000234: phosphoethanolamine N-methyltransferase activity	1.25E-03
56	GO:0050017: L-3-cyanoalanine synthase activity	1.25E-03
57	GO:0008883: glutamyl-tRNA reductase activity	1.25E-03
58	GO:0047746: chlorophyllase activity	1.25E-03
59	GO:0042389: omega-3 fatty acid desaturase activity	1.25E-03
60	GO:0080041: ADP-ribose pyrophosphohydrolase activity	1.25E-03
61	GO:0010297: heteropolysaccharide binding	1.25E-03
62	GO:0009977: proton motive force dependent protein transmembrane transporter activity	1.25E-03
63	GO:0004617: phosphoglycerate dehydrogenase activity	1.25E-03
64	GO:0004047: aminomethyltransferase activity	1.25E-03
65	GO:0015173: aromatic amino acid transmembrane transporter activity	1.25E-03
66	GO:0008479: queuine tRNA-ribosyltransferase activity	1.25E-03
67	GO:0003844: 1,4-alpha-glucan branching enzyme activity	1.25E-03
68	GO:0051287: NAD binding	1.43E-03
69	GO:0030234: enzyme regulator activity	1.61E-03
70	GO:0043169: cation binding	2.06E-03
71	GO:0003955: NAD(P)H dehydrogenase (quinone) activity	2.06E-03
72	GO:0016992: lipoate synthase activity	2.06E-03
73	GO:0004751: ribose-5-phosphate isomerase activity	2.06E-03
74	GO:0016742: hydroxymethyl-, formyl- and related transferase activity	2.06E-03
75	GO:0004367: glycerol-3-phosphate dehydrogenase [NAD+] activity	2.06E-03
76	GO:0008864: formyltetrahydrofolate deformylase activity	2.06E-03
77	GO:0016620: oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor	2.06E-03
78	GO:0010277: chlorophyllide a oxygenase [overall] activity	2.06E-03
79	GO:0004565: beta-galactosidase activity	2.43E-03
80	GO:0052852: very-long-chain-(S)-2-hydroxy-acid oxidase activity	3.00E-03
81	GO:0016628: oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor	3.00E-03
82	GO:0004351: glutamate decarboxylase activity	3.00E-03
83	GO:0052853: long-chain-(S)-2-hydroxy-long-chain-acid oxidase activity	3.00E-03
84	GO:0052854: medium-chain-(S)-2-hydroxy-acid oxidase activity	3.00E-03
85	GO:0008168: methyltransferase activity	3.28E-03
86	GO:0009011: starch synthase activity	4.04E-03
87	GO:0043495: protein anchor	4.04E-03
88	GO:0008891: glycolate oxidase activity	4.04E-03
89	GO:0008453: alanine-glyoxylate transaminase activity	4.04E-03
90	GO:0003746: translation elongation factor activity	4.16E-03
91	GO:0005275: amine transmembrane transporter activity	5.19E-03
92	GO:0016787: hydrolase activity	5.76E-03
93	GO:0003727: single-stranded RNA binding	6.04E-03
94	GO:0051537: 2 iron, 2 sulfur cluster binding	6.37E-03
95	GO:0004556: alpha-amylase activity	6.43E-03
96	GO:0004462: lactoylglutathione lyase activity	6.43E-03
97	GO:0004130: cytochrome-c peroxidase activity	6.43E-03
98	GO:0004366: glycerol-3-phosphate O-acyltransferase activity	6.43E-03
99	GO:0042578: phosphoric ester hydrolase activity	6.43E-03
100	GO:0016615: malate dehydrogenase activity	6.43E-03
101	GO:0004849: uridine kinase activity	7.77E-03
102	GO:0045156: electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity	7.77E-03
103	GO:0004747: ribokinase activity	7.77E-03
104	GO:0030060: L-malate dehydrogenase activity	7.77E-03
105	GO:0003886: DNA (cytosine-5-)-methyltransferase activity	7.77E-03
106	GO:0004124: cysteine synthase activity	7.77E-03
107	GO:0019899: enzyme binding	9.20E-03
108	GO:0016762: xyloglucan:xyloglucosyl transferase activity	9.47E-03
109	GO:0042802: identical protein binding	9.68E-03
110	GO:0004033: aldo-keto reductase (NADP) activity	1.07E-02
111	GO:0008865: fructokinase activity	1.07E-02
112	GO:0009055: electron carrier activity	1.14E-02
113	GO:0008135: translation factor activity, RNA binding	1.23E-02
114	GO:0051082: unfolded protein binding	1.33E-02
115	GO:0071949: FAD binding	1.40E-02
116	GO:0008553: hydrogen-exporting ATPase activity, phosphorylative mechanism	1.40E-02
117	GO:0030955: potassium ion binding	1.58E-02
118	GO:0004028: 3-chloroallyl aldehyde dehydrogenase activity	1.58E-02
119	GO:0004743: pyruvate kinase activity	1.58E-02
120	GO:0016798: hydrolase activity, acting on glycosyl bonds	1.62E-02
121	GO:0005089: Rho guanyl-nucleotide exchange factor activity	1.95E-02
122	GO:0004222: metalloendopeptidase activity	1.99E-02
123	GO:0016887: ATPase activity	2.15E-02
124	GO:0005315: inorganic phosphate transmembrane transporter activity	2.36E-02
125	GO:0004364: glutathione transferase activity	2.84E-02
126	GO:0004185: serine-type carboxypeptidase activity	2.95E-02
127	GO:0005509: calcium ion binding	3.08E-02
128	GO:0043621: protein self-association	3.19E-02
129	GO:0035091: phosphatidylinositol binding	3.19E-02
130	GO:0003729: mRNA binding	3.23E-02
131	GO:0051536: iron-sulfur cluster binding	3.24E-02
132	GO:0005515: protein binding	3.91E-02
133	GO:0003899: DNA-directed 5'-3' RNA polymerase activity	3.97E-02
134	GO:0003690: double-stranded DNA binding	4.11E-02
135	GO:0022891: substrate-specific transmembrane transporter activity	4.22E-02
136	GO:0004601: peroxidase activity	4.55E-02
137	GO:0047134: protein-disulfide reductase activity	4.74E-02
138	GO:0016747: transferase activity, transferring acyl groups other than amino-acyl groups	4.84E-02