GO Enrichment Analysis of Co-expressed Genes with
AT5G04230
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0015843: methylammonium transport | 0.00E+00 |
| 2 | GO:0031222: arabinan catabolic process | 0.00E+00 |
| 3 | GO:1901333: positive regulation of lateral root development | 0.00E+00 |
| 4 | GO:0042794: rRNA transcription from plastid promoter | 0.00E+00 |
| 5 | GO:0046719: regulation by virus of viral protein levels in host cell | 0.00E+00 |
| 6 | GO:1901698: response to nitrogen compound | 0.00E+00 |
| 7 | GO:0035884: arabinan biosynthetic process | 0.00E+00 |
| 8 | GO:0009606: tropism | 0.00E+00 |
| 9 | GO:0097164: ammonium ion metabolic process | 0.00E+00 |
| 10 | GO:0070455: positive regulation of heme biosynthetic process | 0.00E+00 |
| 11 | GO:0006003: fructose 2,6-bisphosphate metabolic process | 0.00E+00 |
| 12 | GO:0010480: microsporocyte differentiation | 0.00E+00 |
| 13 | GO:0042793: transcription from plastid promoter | 2.58E-06 |
| 14 | GO:0009658: chloroplast organization | 2.24E-05 |
| 15 | GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway | 4.69E-05 |
| 16 | GO:2000038: regulation of stomatal complex development | 7.23E-05 |
| 17 | GO:2000037: regulation of stomatal complex patterning | 2.22E-04 |
| 18 | GO:0006955: immune response | 2.89E-04 |
| 19 | GO:0048437: floral organ development | 2.89E-04 |
| 20 | GO:0010444: guard mother cell differentiation | 2.89E-04 |
| 21 | GO:0009926: auxin polar transport | 3.05E-04 |
| 22 | GO:0043609: regulation of carbon utilization | 3.40E-04 |
| 23 | GO:0050891: multicellular organismal water homeostasis | 3.40E-04 |
| 24 | GO:0051013: microtubule severing | 3.40E-04 |
| 25 | GO:0034757: negative regulation of iron ion transport | 3.40E-04 |
| 26 | GO:0010376: stomatal complex formation | 3.40E-04 |
| 27 | GO:1903866: palisade mesophyll development | 3.40E-04 |
| 28 | GO:0033206: meiotic cytokinesis | 3.40E-04 |
| 29 | GO:0042255: ribosome assembly | 3.64E-04 |
| 30 | GO:0009451: RNA modification | 3.96E-04 |
| 31 | GO:0007389: pattern specification process | 4.45E-04 |
| 32 | GO:0009416: response to light stimulus | 5.08E-04 |
| 33 | GO:0032502: developmental process | 5.35E-04 |
| 34 | GO:0006529: asparagine biosynthetic process | 7.40E-04 |
| 35 | GO:2000123: positive regulation of stomatal complex development | 7.40E-04 |
| 36 | GO:0061087: positive regulation of histone H3-K27 methylation | 7.40E-04 |
| 37 | GO:0010254: nectary development | 7.40E-04 |
| 38 | GO:1902326: positive regulation of chlorophyll biosynthetic process | 7.40E-04 |
| 39 | GO:0010569: regulation of double-strand break repair via homologous recombination | 7.40E-04 |
| 40 | GO:0009629: response to gravity | 7.40E-04 |
| 41 | GO:0010434: bract formation | 7.40E-04 |
| 42 | GO:0010235: guard mother cell cytokinesis | 7.40E-04 |
| 43 | GO:0070981: L-asparagine biosynthetic process | 7.40E-04 |
| 44 | GO:0010271: regulation of chlorophyll catabolic process | 7.40E-04 |
| 45 | GO:0048439: flower morphogenesis | 7.40E-04 |
| 46 | GO:0000256: allantoin catabolic process | 7.40E-04 |
| 47 | GO:0071497: cellular response to freezing | 7.40E-04 |
| 48 | GO:1904143: positive regulation of carotenoid biosynthetic process | 7.40E-04 |
| 49 | GO:0048229: gametophyte development | 8.49E-04 |
| 50 | GO:0010075: regulation of meristem growth | 1.10E-03 |
| 51 | GO:0009767: photosynthetic electron transport chain | 1.10E-03 |
| 52 | GO:0000160: phosphorelay signal transduction system | 1.16E-03 |
| 53 | GO:0009734: auxin-activated signaling pathway | 1.17E-03 |
| 54 | GO:0009954: proximal/distal pattern formation | 1.20E-03 |
| 55 | GO:0006000: fructose metabolic process | 1.20E-03 |
| 56 | GO:0080117: secondary growth | 1.20E-03 |
| 57 | GO:1902806: regulation of cell cycle G1/S phase transition | 1.20E-03 |
| 58 | GO:0090391: granum assembly | 1.20E-03 |
| 59 | GO:0010136: ureide catabolic process | 1.20E-03 |
| 60 | GO:0071705: nitrogen compound transport | 1.20E-03 |
| 61 | GO:0090436: leaf pavement cell development | 1.20E-03 |
| 62 | GO:0001578: microtubule bundle formation | 1.20E-03 |
| 63 | GO:0009934: regulation of meristem structural organization | 1.23E-03 |
| 64 | GO:0009944: polarity specification of adaxial/abaxial axis | 1.70E-03 |
| 65 | GO:1902476: chloride transmembrane transport | 1.72E-03 |
| 66 | GO:0010239: chloroplast mRNA processing | 1.72E-03 |
| 67 | GO:0044211: CTP salvage | 1.72E-03 |
| 68 | GO:0006145: purine nucleobase catabolic process | 1.72E-03 |
| 69 | GO:0033014: tetrapyrrole biosynthetic process | 1.72E-03 |
| 70 | GO:0015696: ammonium transport | 1.72E-03 |
| 71 | GO:0046739: transport of virus in multicellular host | 1.72E-03 |
| 72 | GO:2000904: regulation of starch metabolic process | 1.72E-03 |
| 73 | GO:1902290: positive regulation of defense response to oomycetes | 1.72E-03 |
| 74 | GO:0006306: DNA methylation | 2.06E-03 |
| 75 | GO:0016998: cell wall macromolecule catabolic process | 2.06E-03 |
| 76 | GO:0006346: methylation-dependent chromatin silencing | 2.31E-03 |
| 77 | GO:1901141: regulation of lignin biosynthetic process | 2.31E-03 |
| 78 | GO:0051322: anaphase | 2.31E-03 |
| 79 | GO:0071249: cellular response to nitrate | 2.31E-03 |
| 80 | GO:1902584: positive regulation of response to water deprivation | 2.31E-03 |
| 81 | GO:0072488: ammonium transmembrane transport | 2.31E-03 |
| 82 | GO:1901002: positive regulation of response to salt stress | 2.31E-03 |
| 83 | GO:0044206: UMP salvage | 2.31E-03 |
| 84 | GO:0044205: 'de novo' UMP biosynthetic process | 2.31E-03 |
| 85 | GO:0008380: RNA splicing | 2.52E-03 |
| 86 | GO:0010091: trichome branching | 2.68E-03 |
| 87 | GO:1902183: regulation of shoot apical meristem development | 2.96E-03 |
| 88 | GO:0016123: xanthophyll biosynthetic process | 2.96E-03 |
| 89 | GO:0010438: cellular response to sulfur starvation | 2.96E-03 |
| 90 | GO:0048578: positive regulation of long-day photoperiodism, flowering | 2.96E-03 |
| 91 | GO:0032876: negative regulation of DNA endoreduplication | 2.96E-03 |
| 92 | GO:0030308: negative regulation of cell growth | 2.96E-03 |
| 93 | GO:0010375: stomatal complex patterning | 2.96E-03 |
| 94 | GO:0006544: glycine metabolic process | 2.96E-03 |
| 95 | GO:0009736: cytokinin-activated signaling pathway | 2.97E-03 |
| 96 | GO:0048653: anther development | 3.13E-03 |
| 97 | GO:0000226: microtubule cytoskeleton organization | 3.13E-03 |
| 98 | GO:0009646: response to absence of light | 3.63E-03 |
| 99 | GO:0006563: L-serine metabolic process | 3.65E-03 |
| 100 | GO:0010304: PSII associated light-harvesting complex II catabolic process | 3.65E-03 |
| 101 | GO:0042176: regulation of protein catabolic process | 3.65E-03 |
| 102 | GO:0010315: auxin efflux | 3.65E-03 |
| 103 | GO:0048831: regulation of shoot system development | 3.65E-03 |
| 104 | GO:0006206: pyrimidine nucleobase metabolic process | 3.65E-03 |
| 105 | GO:0000079: regulation of cyclin-dependent protein serine/threonine kinase activity | 4.40E-03 |
| 106 | GO:0009955: adaxial/abaxial pattern specification | 4.40E-03 |
| 107 | GO:2000033: regulation of seed dormancy process | 4.40E-03 |
| 108 | GO:1901259: chloroplast rRNA processing | 4.40E-03 |
| 109 | GO:0048509: regulation of meristem development | 4.40E-03 |
| 110 | GO:0030488: tRNA methylation | 4.40E-03 |
| 111 | GO:0009554: megasporogenesis | 4.40E-03 |
| 112 | GO:0031047: gene silencing by RNA | 4.45E-03 |
| 113 | GO:0009723: response to ethylene | 4.68E-03 |
| 114 | GO:0010252: auxin homeostasis | 5.05E-03 |
| 115 | GO:0009864: induced systemic resistance, jasmonic acid mediated signaling pathway | 5.19E-03 |
| 116 | GO:0009610: response to symbiotic fungus | 5.19E-03 |
| 117 | GO:0006821: chloride transport | 5.19E-03 |
| 118 | GO:0009938: negative regulation of gibberellic acid mediated signaling pathway | 6.03E-03 |
| 119 | GO:0010439: regulation of glucosinolate biosynthetic process | 6.03E-03 |
| 120 | GO:0001522: pseudouridine synthesis | 6.03E-03 |
| 121 | GO:0030162: regulation of proteolysis | 6.03E-03 |
| 122 | GO:0046620: regulation of organ growth | 6.03E-03 |
| 123 | GO:0006353: DNA-templated transcription, termination | 6.03E-03 |
| 124 | GO:0048766: root hair initiation | 6.03E-03 |
| 125 | GO:0032875: regulation of DNA endoreduplication | 6.03E-03 |
| 126 | GO:0010029: regulation of seed germination | 6.38E-03 |
| 127 | GO:0006002: fructose 6-phosphate metabolic process | 6.92E-03 |
| 128 | GO:0010497: plasmodesmata-mediated intercellular transport | 6.92E-03 |
| 129 | GO:0010052: guard cell differentiation | 6.92E-03 |
| 130 | GO:0006526: arginine biosynthetic process | 6.92E-03 |
| 131 | GO:0009051: pentose-phosphate shunt, oxidative branch | 7.85E-03 |
| 132 | GO:2000024: regulation of leaf development | 7.85E-03 |
| 133 | GO:0006783: heme biosynthetic process | 7.85E-03 |
| 134 | GO:0000373: Group II intron splicing | 7.85E-03 |
| 135 | GO:0009832: plant-type cell wall biogenesis | 8.28E-03 |
| 136 | GO:0006468: protein phosphorylation | 8.72E-03 |
| 137 | GO:1900426: positive regulation of defense response to bacterium | 8.82E-03 |
| 138 | GO:0035999: tetrahydrofolate interconversion | 8.82E-03 |
| 139 | GO:0042761: very long-chain fatty acid biosynthetic process | 8.82E-03 |
| 140 | GO:0006349: regulation of gene expression by genetic imprinting | 8.82E-03 |
| 141 | GO:0031425: chloroplast RNA processing | 8.82E-03 |
| 142 | GO:0008202: steroid metabolic process | 8.82E-03 |
| 143 | GO:0009733: response to auxin | 9.33E-03 |
| 144 | GO:0031627: telomeric loop formation | 9.84E-03 |
| 145 | GO:0010048: vernalization response | 9.84E-03 |
| 146 | GO:0006995: cellular response to nitrogen starvation | 9.84E-03 |
| 147 | GO:0009682: induced systemic resistance | 1.09E-02 |
| 148 | GO:0009089: lysine biosynthetic process via diaminopimelate | 1.09E-02 |
| 149 | GO:0006355: regulation of transcription, DNA-templated | 1.13E-02 |
| 150 | GO:0009617: response to bacterium | 1.17E-02 |
| 151 | GO:0008361: regulation of cell size | 1.20E-02 |
| 152 | GO:0015706: nitrate transport | 1.20E-02 |
| 153 | GO:0045037: protein import into chloroplast stroma | 1.20E-02 |
| 154 | GO:0010582: floral meristem determinacy | 1.20E-02 |
| 155 | GO:0006006: glucose metabolic process | 1.31E-02 |
| 156 | GO:0010143: cutin biosynthetic process | 1.43E-02 |
| 157 | GO:0006541: glutamine metabolic process | 1.43E-02 |
| 158 | GO:0009825: multidimensional cell growth | 1.55E-02 |
| 159 | GO:0010167: response to nitrate | 1.55E-02 |
| 160 | GO:0042538: hyperosmotic salinity response | 1.63E-02 |
| 161 | GO:0006071: glycerol metabolic process | 1.67E-02 |
| 162 | GO:2000377: regulation of reactive oxygen species metabolic process | 1.80E-02 |
| 163 | GO:0005992: trehalose biosynthetic process | 1.80E-02 |
| 164 | GO:0009863: salicylic acid mediated signaling pathway | 1.80E-02 |
| 165 | GO:0010187: negative regulation of seed germination | 1.80E-02 |
| 166 | GO:0043622: cortical microtubule organization | 1.93E-02 |
| 167 | GO:0048316: seed development | 2.13E-02 |
| 168 | GO:0009625: response to insect | 2.35E-02 |
| 169 | GO:0010227: floral organ abscission | 2.35E-02 |
| 170 | GO:0071215: cellular response to abscisic acid stimulus | 2.35E-02 |
| 171 | GO:0010082: regulation of root meristem growth | 2.35E-02 |
| 172 | GO:0006284: base-excision repair | 2.49E-02 |
| 173 | GO:0042127: regulation of cell proliferation | 2.49E-02 |
| 174 | GO:0030154: cell differentiation | 2.56E-02 |
| 175 | GO:0070417: cellular response to cold | 2.64E-02 |
| 176 | GO:0010087: phloem or xylem histogenesis | 2.79E-02 |
| 177 | GO:0042631: cellular response to water deprivation | 2.79E-02 |
| 178 | GO:0080022: primary root development | 2.79E-02 |
| 179 | GO:0010501: RNA secondary structure unwinding | 2.79E-02 |
| 180 | GO:0006342: chromatin silencing | 2.94E-02 |
| 181 | GO:0009741: response to brassinosteroid | 2.94E-02 |
| 182 | GO:0009960: endosperm development | 2.94E-02 |
| 183 | GO:0009958: positive gravitropism | 2.94E-02 |
| 184 | GO:0006351: transcription, DNA-templated | 3.00E-02 |
| 185 | GO:0007018: microtubule-based movement | 3.10E-02 |
| 186 | GO:0009791: post-embryonic development | 3.25E-02 |
| 187 | GO:0009058: biosynthetic process | 3.28E-02 |
| 188 | GO:0080156: mitochondrial mRNA modification | 3.42E-02 |
| 189 | GO:0009751: response to salicylic acid | 3.42E-02 |
| 190 | GO:0071554: cell wall organization or biogenesis | 3.42E-02 |
| 191 | GO:0009630: gravitropism | 3.58E-02 |
| 192 | GO:0071281: cellular response to iron ion | 3.75E-02 |
| 193 | GO:0010090: trichome morphogenesis | 3.75E-02 |
| 194 | GO:0009828: plant-type cell wall loosening | 3.92E-02 |
| 195 | GO:0007267: cell-cell signaling | 4.09E-02 |
| 196 | GO:0000910: cytokinesis | 4.26E-02 |
| 197 | GO:0001666: response to hypoxia | 4.44E-02 |
| 198 | GO:0010027: thylakoid membrane organization | 4.44E-02 |
| 199 | GO:0009739: response to gibberellin | 4.79E-02 |
| 200 | GO:0006357: regulation of transcription from RNA polymerase II promoter | 4.91E-02 |
| 201 | GO:0015995: chlorophyll biosynthetic process | 4.98E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0042834: peptidoglycan binding | 0.00E+00 |
| 2 | GO:0004038: allantoinase activity | 0.00E+00 |
| 3 | GO:0004331: fructose-2,6-bisphosphate 2-phosphatase activity | 0.00E+00 |
| 4 | GO:0003873: 6-phosphofructo-2-kinase activity | 0.00E+00 |
| 5 | GO:0003727: single-stranded RNA binding | 1.59E-05 |
| 6 | GO:0004016: adenylate cyclase activity | 3.40E-04 |
| 7 | GO:0008836: diaminopimelate decarboxylase activity | 3.40E-04 |
| 8 | GO:0004071: aspartate-ammonia ligase activity | 3.40E-04 |
| 9 | GO:0008568: microtubule-severing ATPase activity | 3.40E-04 |
| 10 | GO:0004088: carbamoyl-phosphate synthase (glutamine-hydrolyzing) activity | 3.40E-04 |
| 11 | GO:0052906: tRNA (guanine(37)-N(1))-methyltransferase activity | 3.40E-04 |
| 12 | GO:0009672: auxin:proton symporter activity | 6.32E-04 |
| 13 | GO:0000095: S-adenosyl-L-methionine transmembrane transporter activity | 7.40E-04 |
| 14 | GO:0008805: carbon-monoxide oxygenase activity | 7.40E-04 |
| 15 | GO:0009884: cytokinin receptor activity | 7.40E-04 |
| 16 | GO:0004066: asparagine synthase (glutamine-hydrolyzing) activity | 7.40E-04 |
| 17 | GO:0005089: Rho guanyl-nucleotide exchange factor activity | 8.49E-04 |
| 18 | GO:0009982: pseudouridine synthase activity | 1.10E-03 |
| 19 | GO:0010329: auxin efflux transmembrane transporter activity | 1.10E-03 |
| 20 | GO:0019843: rRNA binding | 1.18E-03 |
| 21 | GO:0005034: osmosensor activity | 1.20E-03 |
| 22 | GO:0052722: fatty acid in-chain hydroxylase activity | 1.20E-03 |
| 23 | GO:0017150: tRNA dihydrouridine synthase activity | 1.20E-03 |
| 24 | GO:0047334: diphosphate-fructose-6-phosphate 1-phosphotransferase activity | 1.20E-03 |
| 25 | GO:0001872: (1->3)-beta-D-glucan binding | 1.72E-03 |
| 26 | GO:0033612: receptor serine/threonine kinase binding | 2.06E-03 |
| 27 | GO:0046556: alpha-L-arabinofuranosidase activity | 2.31E-03 |
| 28 | GO:0004845: uracil phosphoribosyltransferase activity | 2.31E-03 |
| 29 | GO:0004345: glucose-6-phosphate dehydrogenase activity | 2.31E-03 |
| 30 | GO:0043495: protein anchor | 2.31E-03 |
| 31 | GO:0005253: anion channel activity | 2.31E-03 |
| 32 | GO:0004519: endonuclease activity | 2.78E-03 |
| 33 | GO:0008725: DNA-3-methyladenine glycosylase activity | 2.96E-03 |
| 34 | GO:0004372: glycine hydroxymethyltransferase activity | 2.96E-03 |
| 35 | GO:0016773: phosphotransferase activity, alcohol group as acceptor | 2.96E-03 |
| 36 | GO:0005515: protein binding | 3.02E-03 |
| 37 | GO:0003777: microtubule motor activity | 3.39E-03 |
| 38 | GO:0010181: FMN binding | 3.63E-03 |
| 39 | GO:0008519: ammonium transmembrane transporter activity | 3.65E-03 |
| 40 | GO:0005247: voltage-gated chloride channel activity | 3.65E-03 |
| 41 | GO:2001070: starch binding | 3.65E-03 |
| 42 | GO:0003723: RNA binding | 3.99E-03 |
| 43 | GO:0019900: kinase binding | 4.40E-03 |
| 44 | GO:0045156: electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity | 4.40E-03 |
| 45 | GO:0004849: uridine kinase activity | 4.40E-03 |
| 46 | GO:0000156: phosphorelay response regulator activity | 4.74E-03 |
| 47 | GO:0004672: protein kinase activity | 5.53E-03 |
| 48 | GO:0004674: protein serine/threonine kinase activity | 5.79E-03 |
| 49 | GO:0008142: oxysterol binding | 6.92E-03 |
| 50 | GO:0008353: RNA polymerase II carboxy-terminal domain kinase activity | 6.92E-03 |
| 51 | GO:0004871: signal transducer activity | 7.35E-03 |
| 52 | GO:0008889: glycerophosphodiester phosphodiesterase activity | 7.85E-03 |
| 53 | GO:0000989: transcription factor activity, transcription factor binding | 7.85E-03 |
| 54 | GO:0004693: cyclin-dependent protein serine/threonine kinase activity | 8.69E-03 |
| 55 | GO:0004673: protein histidine kinase activity | 9.84E-03 |
| 56 | GO:0004805: trehalose-phosphatase activity | 9.84E-03 |
| 57 | GO:0008017: microtubule binding | 9.93E-03 |
| 58 | GO:0003691: double-stranded telomeric DNA binding | 1.09E-02 |
| 59 | GO:0000976: transcription regulatory region sequence-specific DNA binding | 1.20E-02 |
| 60 | GO:0031072: heat shock protein binding | 1.31E-02 |
| 61 | GO:0000155: phosphorelay sensor kinase activity | 1.31E-02 |
| 62 | GO:0004022: alcohol dehydrogenase (NAD) activity | 1.31E-02 |
| 63 | GO:0042973: glucan endo-1,3-beta-D-glucosidase activity | 1.43E-02 |
| 64 | GO:0003690: double-stranded DNA binding | 1.81E-02 |
| 65 | GO:0043424: protein histidine kinase binding | 1.93E-02 |
| 66 | GO:0005345: purine nucleobase transmembrane transporter activity | 1.93E-02 |
| 67 | GO:0004176: ATP-dependent peptidase activity | 2.07E-02 |
| 68 | GO:0004650: polygalacturonase activity | 2.27E-02 |
| 69 | GO:0005215: transporter activity | 2.63E-02 |
| 70 | GO:0018024: histone-lysine N-methyltransferase activity | 2.64E-02 |
| 71 | GO:0001135: transcription factor activity, RNA polymerase II transcription factor recruiting | 2.69E-02 |
| 72 | GO:0003700: transcription factor activity, sequence-specific DNA binding | 2.73E-02 |
| 73 | GO:0003713: transcription coactivator activity | 2.94E-02 |
| 74 | GO:0001085: RNA polymerase II transcription factor binding | 2.94E-02 |
| 75 | GO:0005524: ATP binding | 2.98E-02 |
| 76 | GO:0000981: RNA polymerase II transcription factor activity, sequence-specific DNA binding | 3.07E-02 |
| 77 | GO:0019901: protein kinase binding | 3.25E-02 |
| 78 | GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds | 3.35E-02 |
| 79 | GO:0016829: lyase activity | 3.37E-02 |
| 80 | GO:0016491: oxidoreductase activity | 3.51E-02 |
| 81 | GO:0016759: cellulose synthase activity | 3.92E-02 |
| 82 | GO:0008237: metallopeptidase activity | 4.09E-02 |
| 83 | GO:0016413: O-acetyltransferase activity | 4.26E-02 |
| 84 | GO:0004004: ATP-dependent RNA helicase activity | 4.98E-02 |
| 85 | GO:0030247: polysaccharide binding | 4.98E-02 |