co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT5G03120

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0043488: regulation of mRNA stability	0.00E+00
2	GO:0061157: mRNA destabilization	0.00E+00
3	GO:0045176: apical protein localization	0.00E+00
4	GO:0090706: specification of plant organ position	0.00E+00
5	GO:0046460: neutral lipid biosynthetic process	0.00E+00
6	GO:0019379: sulfate assimilation, phosphoadenylyl sulfate reduction by phosphoadenylyl-sulfate reductase (thioredoxin)	0.00E+00
7	GO:0009157: deoxyribonucleoside monophosphate biosynthetic process	0.00E+00
8	GO:0031116: positive regulation of microtubule polymerization	0.00E+00
9	GO:0007037: vacuolar phosphate transport	0.00E+00
10	GO:0031129: inductive cell-cell signaling	0.00E+00
11	GO:2001294: malonyl-CoA catabolic process	0.00E+00
12	GO:0015843: methylammonium transport	0.00E+00
13	GO:0070979: protein K11-linked ubiquitination	0.00E+00
14	GO:0010158: abaxial cell fate specification	2.74E-06
15	GO:0051322: anaphase	1.14E-04
16	GO:0009902: chloroplast relocation	1.14E-04
17	GO:0045038: protein import into chloroplast thylakoid membrane	1.76E-04
18	GO:1902183: regulation of shoot apical meristem development	1.76E-04
19	GO:0009733: response to auxin	2.94E-04
20	GO:0051171: regulation of nitrogen compound metabolic process	4.45E-04
21	GO:0010482: regulation of epidermal cell division	4.45E-04
22	GO:0009090: homoserine biosynthetic process	4.45E-04
23	GO:1902265: abscisic acid homeostasis	4.45E-04
24	GO:0071028: nuclear mRNA surveillance	4.45E-04
25	GO:0043266: regulation of potassium ion transport	4.45E-04
26	GO:0006659: phosphatidylserine biosynthetic process	4.45E-04
27	GO:2000021: regulation of ion homeostasis	4.45E-04
28	GO:0006264: mitochondrial DNA replication	4.45E-04
29	GO:0033259: plastid DNA replication	4.45E-04
30	GO:0045488: pectin metabolic process	4.45E-04
31	GO:1902458: positive regulation of stomatal opening	4.45E-04
32	GO:0006177: GMP biosynthetic process	4.45E-04
33	GO:0010450: inflorescence meristem growth	4.45E-04
34	GO:0007155: cell adhesion	5.41E-04
35	GO:0010182: sugar mediated signaling pathway	6.25E-04
36	GO:0040008: regulation of growth	7.25E-04
37	GO:2000024: regulation of leaf development	7.90E-04
38	GO:1900865: chloroplast RNA modification	9.32E-04
39	GO:0034475: U4 snRNA 3'-end processing	9.61E-04
40	GO:1905011: transmembrane phosphate ion transport from cytosol to vacuole	9.61E-04
41	GO:0010115: regulation of abscisic acid biosynthetic process	9.61E-04
42	GO:1900871: chloroplast mRNA modification	9.61E-04
43	GO:2000039: regulation of trichome morphogenesis	9.61E-04
44	GO:0007154: cell communication	9.61E-04
45	GO:0080064: 4,4-dimethyl-9beta,19-cyclopropylsterol oxidation	9.61E-04
46	GO:1900033: negative regulation of trichome patterning	9.61E-04
47	GO:0042814: monopolar cell growth	9.61E-04
48	GO:0031125: rRNA 3'-end processing	9.61E-04
49	GO:1903426: regulation of reactive oxygen species biosynthetic process	9.61E-04
50	GO:0071051: polyadenylation-dependent snoRNA 3'-end processing	9.61E-04
51	GO:0016075: rRNA catabolic process	1.57E-03
52	GO:0034427: nuclear-transcribed mRNA catabolic process, exonucleolytic, 3'-5'	1.57E-03
53	GO:0031022: nuclear migration along microfilament	1.57E-03
54	GO:0051127: positive regulation of actin nucleation	1.57E-03
55	GO:0019419: sulfate reduction	1.57E-03
56	GO:0031145: anaphase-promoting complex-dependent catabolic process	1.57E-03
57	GO:0043693: monoterpene biosynthetic process	1.57E-03
58	GO:0045604: regulation of epidermal cell differentiation	1.57E-03
59	GO:0009150: purine ribonucleotide metabolic process	1.57E-03
60	GO:0006753: nucleoside phosphate metabolic process	1.57E-03
61	GO:0001578: microtubule bundle formation	1.57E-03
62	GO:0045493: xylan catabolic process	1.57E-03
63	GO:0045165: cell fate commitment	1.57E-03
64	GO:0009658: chloroplast organization	1.69E-03
65	GO:0051639: actin filament network formation	2.27E-03
66	GO:0010255: glucose mediated signaling pathway	2.27E-03
67	GO:0015696: ammonium transport	2.27E-03
68	GO:0048530: fruit morphogenesis	2.27E-03
69	GO:0006168: adenine salvage	2.27E-03
70	GO:0006164: purine nucleotide biosynthetic process	2.27E-03
71	GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly	2.27E-03
72	GO:0009067: aspartate family amino acid biosynthetic process	2.27E-03
73	GO:0006166: purine ribonucleoside salvage	2.27E-03
74	GO:0030071: regulation of mitotic metaphase/anaphase transition	2.27E-03
75	GO:0009944: polarity specification of adaxial/abaxial axis	2.54E-03
76	GO:0010187: negative regulation of seed germination	2.54E-03
77	GO:0005992: trehalose biosynthetic process	2.54E-03
78	GO:0019344: cysteine biosynthetic process	2.54E-03
79	GO:0009734: auxin-activated signaling pathway	2.64E-03
80	GO:0051764: actin crosslink formation	3.05E-03
81	GO:0015846: polyamine transport	3.05E-03
82	GO:0072488: ammonium transmembrane transport	3.05E-03
83	GO:0006021: inositol biosynthetic process	3.05E-03
84	GO:0007020: microtubule nucleation	3.05E-03
85	GO:0009165: nucleotide biosynthetic process	3.05E-03
86	GO:0048629: trichome patterning	3.05E-03
87	GO:0032876: negative regulation of DNA endoreduplication	3.90E-03
88	GO:0046785: microtubule polymerization	3.90E-03
89	GO:0006544: glycine metabolic process	3.90E-03
90	GO:0044209: AMP salvage	3.90E-03
91	GO:0009789: positive regulation of abscisic acid-activated signaling pathway	4.34E-03
92	GO:0010087: phloem or xylem histogenesis	4.69E-03
93	GO:0006655: phosphatidylglycerol biosynthetic process	4.83E-03
94	GO:0006139: nucleobase-containing compound metabolic process	4.83E-03
95	GO:0016554: cytidine to uridine editing	4.83E-03
96	GO:0009117: nucleotide metabolic process	4.83E-03
97	GO:0000741: karyogamy	4.83E-03
98	GO:0006561: proline biosynthetic process	4.83E-03
99	GO:0006563: L-serine metabolic process	4.83E-03
100	GO:0048827: phyllome development	4.83E-03
101	GO:0010264: myo-inositol hexakisphosphate biosynthetic process	4.83E-03
102	GO:0009959: negative gravitropism	4.83E-03
103	GO:0009585: red, far-red light phototransduction	4.99E-03
104	GO:0010154: fruit development	5.06E-03
105	GO:0042372: phylloquinone biosynthetic process	5.83E-03
106	GO:0009082: branched-chain amino acid biosynthetic process	5.83E-03
107	GO:0034389: lipid particle organization	5.83E-03
108	GO:2000033: regulation of seed dormancy process	5.83E-03
109	GO:0009099: valine biosynthetic process	5.83E-03
110	GO:0009903: chloroplast avoidance movement	5.83E-03
111	GO:0009088: threonine biosynthetic process	5.83E-03
112	GO:0048444: floral organ morphogenesis	5.83E-03
113	GO:0080086: stamen filament development	5.83E-03
114	GO:0048825: cotyledon development	5.84E-03
115	GO:0010583: response to cyclopentenone	6.68E-03
116	GO:0010050: vegetative phase change	6.89E-03
117	GO:0015937: coenzyme A biosynthetic process	6.89E-03
118	GO:0006400: tRNA modification	6.89E-03
119	GO:0050829: defense response to Gram-negative bacterium	6.89E-03
120	GO:0010161: red light signaling pathway	6.89E-03
121	GO:0009395: phospholipid catabolic process	6.89E-03
122	GO:0048528: post-embryonic root development	6.89E-03
123	GO:0009740: gibberellic acid mediated signaling pathway	7.25E-03
124	GO:0033386: geranylgeranyl diphosphate biosynthetic process	8.02E-03
125	GO:0009787: regulation of abscisic acid-activated signaling pathway	8.02E-03
126	GO:0009850: auxin metabolic process	8.02E-03
127	GO:0010078: maintenance of root meristem identity	8.02E-03
128	GO:0009704: de-etiolation	8.02E-03
129	GO:0042255: ribosome assembly	8.02E-03
130	GO:0032875: regulation of DNA endoreduplication	8.02E-03
131	GO:0046620: regulation of organ growth	8.02E-03
132	GO:0006353: DNA-templated transcription, termination	8.02E-03
133	GO:0070413: trehalose metabolism in response to stress	8.02E-03
134	GO:2000070: regulation of response to water deprivation	8.02E-03
135	GO:0000910: cytokinesis	8.56E-03
136	GO:0009911: positive regulation of flower development	9.07E-03
137	GO:0006002: fructose 6-phosphate metabolic process	9.21E-03
138	GO:0009097: isoleucine biosynthetic process	9.21E-03
139	GO:0010100: negative regulation of photomorphogenesis	9.21E-03
140	GO:0006997: nucleus organization	9.21E-03
141	GO:0043562: cellular response to nitrogen levels	9.21E-03
142	GO:0010093: specification of floral organ identity	9.21E-03
143	GO:0010099: regulation of photomorphogenesis	9.21E-03
144	GO:0010029: regulation of seed germination	9.60E-03
145	GO:0009627: systemic acquired resistance	1.01E-02
146	GO:0009051: pentose-phosphate shunt, oxidative branch	1.05E-02
147	GO:0045337: farnesyl diphosphate biosynthetic process	1.05E-02
148	GO:0033384: geranyl diphosphate biosynthetic process	1.05E-02
149	GO:0019432: triglyceride biosynthetic process	1.05E-02
150	GO:0006783: heme biosynthetic process	1.05E-02
151	GO:0000373: Group II intron splicing	1.05E-02
152	GO:0006189: 'de novo' IMP biosynthetic process	1.05E-02
153	GO:0009638: phototropism	1.18E-02
154	GO:0042761: very long-chain fatty acid biosynthetic process	1.18E-02
155	GO:0009098: leucine biosynthetic process	1.18E-02
156	GO:0010018: far-red light signaling pathway	1.18E-02
157	GO:0009086: methionine biosynthetic process	1.18E-02
158	GO:0048354: mucilage biosynthetic process involved in seed coat development	1.18E-02
159	GO:0010380: regulation of chlorophyll biosynthetic process	1.18E-02
160	GO:0009299: mRNA transcription	1.31E-02
161	GO:0010162: seed dormancy process	1.31E-02
162	GO:0006535: cysteine biosynthetic process from serine	1.31E-02
163	GO:0000103: sulfate assimilation	1.31E-02
164	GO:0009688: abscisic acid biosynthetic process	1.31E-02
165	GO:0045036: protein targeting to chloroplast	1.31E-02
166	GO:0006949: syncytium formation	1.31E-02
167	GO:0010192: mucilage biosynthetic process	1.31E-02
168	GO:0009089: lysine biosynthetic process via diaminopimelate	1.46E-02
169	GO:0009773: photosynthetic electron transport in photosystem I	1.46E-02
170	GO:1903507: negative regulation of nucleic acid-templated transcription	1.46E-02
171	GO:0006415: translational termination	1.46E-02
172	GO:0009750: response to fructose	1.46E-02
173	GO:0009684: indoleacetic acid biosynthetic process	1.46E-02
174	GO:0045490: pectin catabolic process	1.57E-02
175	GO:0006790: sulfur compound metabolic process	1.60E-02
176	GO:0016024: CDP-diacylglycerol biosynthetic process	1.60E-02
177	GO:0010582: floral meristem determinacy	1.60E-02
178	GO:0016310: phosphorylation	1.64E-02
179	GO:0071555: cell wall organization	1.65E-02
180	GO:0016042: lipid catabolic process	1.67E-02
181	GO:0030048: actin filament-based movement	1.75E-02
182	GO:0010588: cotyledon vascular tissue pattern formation	1.75E-02
183	GO:0010628: positive regulation of gene expression	1.75E-02
184	GO:0006006: glucose metabolic process	1.75E-02
185	GO:0010229: inflorescence development	1.75E-02
186	GO:0030036: actin cytoskeleton organization	1.75E-02
187	GO:0009725: response to hormone	1.75E-02
188	GO:0007166: cell surface receptor signaling pathway	1.87E-02
189	GO:0048467: gynoecium development	1.91E-02
190	GO:0006541: glutamine metabolic process	1.91E-02
191	GO:0010020: chloroplast fission	1.91E-02
192	GO:0009933: meristem structural organization	1.91E-02
193	GO:0010540: basipetal auxin transport	1.91E-02
194	GO:0008283: cell proliferation	1.95E-02
195	GO:0009825: multidimensional cell growth	2.07E-02
196	GO:0090351: seedling development	2.07E-02
197	GO:0010030: positive regulation of seed germination	2.07E-02
198	GO:0009965: leaf morphogenesis	2.19E-02
199	GO:0000162: tryptophan biosynthetic process	2.24E-02
200	GO:0010025: wax biosynthetic process	2.24E-02
201	GO:0042753: positive regulation of circadian rhythm	2.24E-02
202	GO:0009833: plant-type primary cell wall biogenesis	2.24E-02
203	GO:0006071: glycerol metabolic process	2.24E-02
204	GO:0007010: cytoskeleton organization	2.41E-02
205	GO:0051017: actin filament bundle assembly	2.41E-02
206	GO:0008299: isoprenoid biosynthetic process	2.59E-02
207	GO:0043622: cortical microtubule organization	2.59E-02
208	GO:2000022: regulation of jasmonic acid mediated signaling pathway	2.95E-02
209	GO:0035428: hexose transmembrane transport	2.95E-02
210	GO:0031348: negative regulation of defense response	2.95E-02
211	GO:0009831: plant-type cell wall modification involved in multidimensional cell growth	3.14E-02
212	GO:0009686: gibberellin biosynthetic process	3.14E-02
213	GO:0048367: shoot system development	3.21E-02
214	GO:0010091: trichome branching	3.33E-02
215	GO:0009306: protein secretion	3.33E-02
216	GO:0010214: seed coat development	3.33E-02
217	GO:0016117: carotenoid biosynthetic process	3.53E-02
218	GO:0042631: cellular response to water deprivation	3.73E-02
219	GO:0000226: microtubule cytoskeleton organization	3.73E-02
220	GO:0000271: polysaccharide biosynthetic process	3.73E-02
221	GO:0080022: primary root development	3.73E-02
222	GO:0008033: tRNA processing	3.73E-02
223	GO:0009624: response to nematode	3.74E-02
224	GO:0009738: abscisic acid-activated signaling pathway	3.86E-02
225	GO:0008360: regulation of cell shape	3.94E-02
226	GO:0009958: positive gravitropism	3.94E-02
227	GO:0045489: pectin biosynthetic process	3.94E-02
228	GO:0010197: polar nucleus fusion	3.94E-02
229	GO:0046323: glucose import	3.94E-02
230	GO:0009416: response to light stimulus	4.05E-02
231	GO:0007018: microtubule-based movement	4.14E-02
232	GO:0009791: post-embryonic development	4.36E-02
233	GO:0008654: phospholipid biosynthetic process	4.36E-02
234	GO:0009851: auxin biosynthetic process	4.36E-02
235	GO:0055114: oxidation-reduction process	4.48E-02
236	GO:0048510: regulation of timing of transition from vegetative to reproductive phase	4.57E-02
237	GO:0016032: viral process	4.79E-02
238	GO:0032502: developmental process	4.79E-02

Rank	GO Term	Adjusted P value
1	GO:0061634: alpha-D-xyloside xylohydrolase	0.00E+00
2	GO:0019808: polyamine binding	0.00E+00
3	GO:0010301: xanthoxin dehydrogenase activity	0.00E+00
4	GO:0080176: xyloglucan 1,6-alpha-xylosidase activity	0.00E+00
5	GO:0004639: phosphoribosylaminoimidazolesuccinocarboxamide synthase activity	0.00E+00
6	GO:0008756: o-succinylbenzoate-CoA ligase activity	0.00E+00
7	GO:1990534: thermospermine oxidase activity	0.00E+00
8	GO:0019136: deoxynucleoside kinase activity	0.00E+00
9	GO:0016788: hydrolase activity, acting on ester bonds	4.12E-04
10	GO:0010945: CoA pyrophosphatase activity	4.45E-04
11	GO:0010313: phytochrome binding	4.45E-04
12	GO:0050139: nicotinate-N-glucosyltransferase activity	4.45E-04
13	GO:0008017: microtubule binding	8.53E-04
14	GO:0009973: adenylyl-sulfate reductase activity	9.61E-04
15	GO:0080097: L-tryptophan:pyruvate aminotransferase activity	9.61E-04
16	GO:0004604: phosphoadenylyl-sulfate reductase (thioredoxin) activity	9.61E-04
17	GO:0015929: hexosaminidase activity	9.61E-04
18	GO:0004412: homoserine dehydrogenase activity	9.61E-04
19	GO:0004563: beta-N-acetylhexosaminidase activity	9.61E-04
20	GO:0004512: inositol-3-phosphate synthase activity	9.61E-04
21	GO:0050017: L-3-cyanoalanine synthase activity	9.61E-04
22	GO:0017118: lipoyltransferase activity	9.61E-04
23	GO:0043425: bHLH transcription factor binding	9.61E-04
24	GO:0050362: L-tryptophan:2-oxoglutarate aminotransferase activity	9.61E-04
25	GO:0009977: proton motive force dependent protein transmembrane transporter activity	9.61E-04
26	GO:0033741: adenylyl-sulfate reductase (glutathione) activity	9.61E-04
27	GO:0003938: IMP dehydrogenase activity	9.61E-04
28	GO:0004805: trehalose-phosphatase activity	1.08E-03
29	GO:0004557: alpha-galactosidase activity	1.57E-03
30	GO:0004049: anthranilate synthase activity	1.57E-03
31	GO:0052692: raffinose alpha-galactosidase activity	1.57E-03
32	GO:0004072: aspartate kinase activity	2.27E-03
33	GO:0035529: NADH pyrophosphatase activity	2.27E-03
34	GO:0000254: C-4 methylsterol oxidase activity	2.27E-03
35	GO:0003999: adenine phosphoribosyltransferase activity	2.27E-03
36	GO:0008893: guanosine-3',5'-bis(diphosphate) 3'-diphosphatase activity	2.27E-03
37	GO:0017172: cysteine dioxygenase activity	2.27E-03
38	GO:0052656: L-isoleucine transaminase activity	2.27E-03
39	GO:0047627: adenylylsulfatase activity	2.27E-03
40	GO:0052654: L-leucine transaminase activity	2.27E-03
41	GO:0052655: L-valine transaminase activity	2.27E-03
42	GO:0052689: carboxylic ester hydrolase activity	2.96E-03
43	GO:0080032: methyl jasmonate esterase activity	3.05E-03
44	GO:0009044: xylan 1,4-beta-xylosidase activity	3.05E-03
45	GO:0004084: branched-chain-amino-acid transaminase activity	3.05E-03
46	GO:0003841: 1-acylglycerol-3-phosphate O-acyltransferase activity	3.05E-03
47	GO:0046556: alpha-L-arabinofuranosidase activity	3.05E-03
48	GO:0004345: glucose-6-phosphate dehydrogenase activity	3.05E-03
49	GO:0008409: 5'-3' exonuclease activity	3.05E-03
50	GO:0046872: metal ion binding	3.10E-03
51	GO:0004675: transmembrane receptor protein serine/threonine kinase activity	3.22E-03
52	GO:0030570: pectate lyase activity	3.68E-03
53	GO:0004372: glycine hydroxymethyltransferase activity	3.90E-03
54	GO:0016846: carbon-sulfur lyase activity	3.90E-03
55	GO:0016773: phosphotransferase activity, alcohol group as acceptor	3.90E-03
56	GO:0003727: single-stranded RNA binding	4.00E-03
57	GO:0004709: MAP kinase kinase kinase activity	4.83E-03
58	GO:0000210: NAD+ diphosphatase activity	4.83E-03
59	GO:0016208: AMP binding	4.83E-03
60	GO:0016462: pyrophosphatase activity	4.83E-03
61	GO:0000293: ferric-chelate reductase activity	4.83E-03
62	GO:0042578: phosphoric ester hydrolase activity	4.83E-03
63	GO:0008519: ammonium transmembrane transporter activity	4.83E-03
64	GO:0042802: identical protein binding	5.16E-03
65	GO:0003730: mRNA 3'-UTR binding	5.83E-03
66	GO:0004144: diacylglycerol O-acyltransferase activity	5.83E-03
67	GO:0004723: calcium-dependent protein serine/threonine phosphatase activity	5.83E-03
68	GO:0004124: cysteine synthase activity	5.83E-03
69	GO:0003872: 6-phosphofructokinase activity	6.89E-03
70	GO:0043022: ribosome binding	8.02E-03
71	GO:0004311: farnesyltranstransferase activity	8.02E-03
72	GO:0004337: geranyltranstransferase activity	1.05E-02
73	GO:0003747: translation release factor activity	1.05E-02
74	GO:0030247: polysaccharide binding	1.07E-02
75	GO:0016829: lyase activity	1.15E-02
76	GO:0004871: signal transducer activity	1.36E-02
77	GO:0008794: arsenate reductase (glutaredoxin) activity	1.46E-02
78	GO:0004161: dimethylallyltranstransferase activity	1.46E-02
79	GO:0050661: NADP binding	1.72E-02
80	GO:0003725: double-stranded RNA binding	1.75E-02
81	GO:0000175: 3'-5'-exoribonuclease activity	1.75E-02
82	GO:0004022: alcohol dehydrogenase (NAD) activity	1.75E-02
83	GO:0016740: transferase activity	1.88E-02
84	GO:0008131: primary amine oxidase activity	1.91E-02
85	GO:0042973: glucan endo-1,3-beta-D-glucosidase activity	1.91E-02
86	GO:0003887: DNA-directed DNA polymerase activity	2.24E-02
87	GO:0005528: FK506 binding	2.41E-02
88	GO:0003714: transcription corepressor activity	2.41E-02
89	GO:0015079: potassium ion transmembrane transporter activity	2.59E-02
90	GO:0019706: protein-cysteine S-palmitoyltransferase activity	2.77E-02
91	GO:0008408: 3'-5' exonuclease activity	2.77E-02
92	GO:0003777: microtubule motor activity	2.91E-02
93	GO:0047262: polygalacturonate 4-alpha-galacturonosyltransferase activity	2.95E-02
94	GO:0016760: cellulose synthase (UDP-forming) activity	3.14E-02
95	GO:0016747: transferase activity, transferring acyl groups other than amino-acyl groups	3.21E-02
96	GO:0016757: transferase activity, transferring glycosyl groups	3.39E-02
97	GO:0016746: transferase activity, transferring acyl groups	3.85E-02
98	GO:0001085: RNA polymerase II transcription factor binding	3.94E-02
99	GO:0005355: glucose transmembrane transporter activity	4.14E-02
100	GO:0010181: FMN binding	4.14E-02
101	GO:0005506: iron ion binding	4.26E-02
102	GO:0044212: transcription regulatory region DNA binding	4.37E-02
103	GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	4.79E-02