Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT5G03050

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0031116: positive regulation of microtubule polymerization0.00E+00
2GO:0000489: maturation of SSU-rRNA from tetracistronic rRNA transcript (SSU-rRNA, LSU-rRNA, 4.5S-rRNA, 5S-rRNA)0.00E+00
3GO:0042817: pyridoxal metabolic process0.00E+00
4GO:0007638: mechanosensory behavior0.00E+00
5GO:0000488: maturation of LSU-rRNA from tetracistronic rRNA transcript (SSU-rRNA, LSU-rRNA, 4.5S-rRNA, 5S-rRNA)0.00E+00
6GO:0031129: inductive cell-cell signaling0.00E+00
7GO:2001294: malonyl-CoA catabolic process0.00E+00
8GO:0071311: cellular response to acetate0.00E+00
9GO:0015843: methylammonium transport0.00E+00
10GO:0070979: protein K11-linked ubiquitination0.00E+00
11GO:0071260: cellular response to mechanical stimulus0.00E+00
12GO:1905421: regulation of plant organ morphogenesis0.00E+00
13GO:0043488: regulation of mRNA stability0.00E+00
14GO:0061157: mRNA destabilization0.00E+00
15GO:0000455: enzyme-directed rRNA pseudouridine synthesis0.00E+00
16GO:0030155: regulation of cell adhesion0.00E+00
17GO:0046460: neutral lipid biosynthetic process0.00E+00
18GO:0019379: sulfate assimilation, phosphoadenylyl sulfate reduction by phosphoadenylyl-sulfate reductase (thioredoxin)0.00E+00
19GO:0032194: ubiquinone biosynthetic process via 3,4-dihydroxy-5-polyprenylbenzoate0.00E+00
20GO:0009733: response to auxin7.61E-09
21GO:0040008: regulation of growth2.82E-06
22GO:2000012: regulation of auxin polar transport2.36E-05
23GO:0009734: auxin-activated signaling pathway2.42E-05
24GO:0046620: regulation of organ growth6.82E-05
25GO:0022622: root system development2.54E-04
26GO:0009658: chloroplast organization4.84E-04
27GO:0042372: phylloquinone biosynthetic process7.00E-04
28GO:0043266: regulation of potassium ion transport7.28E-04
29GO:0006659: phosphatidylserine biosynthetic process7.28E-04
30GO:0042371: vitamin K biosynthetic process7.28E-04
31GO:0043087: regulation of GTPase activity7.28E-04
32GO:2000021: regulation of ion homeostasis7.28E-04
33GO:0034080: CENP-A containing nucleosome assembly7.28E-04
34GO:0000066: mitochondrial ornithine transport7.28E-04
35GO:1902458: positive regulation of stomatal opening7.28E-04
36GO:0000476: maturation of 4.5S rRNA7.28E-04
37GO:0000967: rRNA 5'-end processing7.28E-04
38GO:0051418: microtubule nucleation by microtubule organizing center7.28E-04
39GO:0010482: regulation of epidermal cell division7.28E-04
40GO:0051171: regulation of nitrogen compound metabolic process7.28E-04
41GO:2000025: regulation of leaf formation7.28E-04
42GO:0032880: regulation of protein localization8.94E-04
43GO:0032544: plastid translation1.35E-03
44GO:1900871: chloroplast mRNA modification1.57E-03
45GO:0033566: gamma-tubulin complex localization1.57E-03
46GO:0007154: cell communication1.57E-03
47GO:2000039: regulation of trichome morphogenesis1.57E-03
48GO:1900033: negative regulation of trichome patterning1.57E-03
49GO:0042814: monopolar cell growth1.57E-03
50GO:0034755: iron ion transmembrane transport1.57E-03
51GO:0009220: pyrimidine ribonucleotide biosynthetic process1.57E-03
52GO:0006423: cysteinyl-tRNA aminoacylation1.57E-03
53GO:1903426: regulation of reactive oxygen species biosynthetic process1.57E-03
54GO:0015804: neutral amino acid transport1.57E-03
55GO:0034470: ncRNA processing1.57E-03
56GO:0006739: NADP metabolic process1.57E-03
57GO:0009958: positive gravitropism1.59E-03
58GO:0000373: Group II intron splicing1.62E-03
59GO:1900865: chloroplast RNA modification1.92E-03
60GO:0009638: phototropism1.92E-03
61GO:0007275: multicellular organism development2.14E-03
62GO:0019419: sulfate reduction2.60E-03
63GO:0071230: cellular response to amino acid stimulus2.60E-03
64GO:0031145: anaphase-promoting complex-dependent catabolic process2.60E-03
65GO:0080055: low-affinity nitrate transport2.60E-03
66GO:0009150: purine ribonucleotide metabolic process2.60E-03
67GO:0045604: regulation of epidermal cell differentiation2.60E-03
68GO:0006753: nucleoside phosphate metabolic process2.60E-03
69GO:0001578: microtubule bundle formation2.60E-03
70GO:0045493: xylan catabolic process2.60E-03
71GO:0006760: folic acid-containing compound metabolic process2.60E-03
72GO:0071398: cellular response to fatty acid2.60E-03
73GO:0007052: mitotic spindle organization2.60E-03
74GO:0033591: response to L-ascorbic acid2.60E-03
75GO:0048281: inflorescence morphogenesis2.60E-03
76GO:0051127: positive regulation of actin nucleation2.60E-03
77GO:0006954: inflammatory response2.60E-03
78GO:1902448: positive regulation of shade avoidance2.60E-03
79GO:0006816: calcium ion transport2.61E-03
80GO:0006415: translational termination2.61E-03
81GO:0007166: cell surface receptor signaling pathway3.74E-03
82GO:0008615: pyridoxine biosynthetic process3.78E-03
83GO:0044211: CTP salvage3.78E-03
84GO:0010255: glucose mediated signaling pathway3.78E-03
85GO:0015696: ammonium transport3.78E-03
86GO:0048530: fruit morphogenesis3.78E-03
87GO:0090307: mitotic spindle assembly3.78E-03
88GO:2000904: regulation of starch metabolic process3.78E-03
89GO:0043433: negative regulation of sequence-specific DNA binding transcription factor activity3.78E-03
90GO:0006168: adenine salvage3.78E-03
91GO:0006164: purine nucleotide biosynthetic process3.78E-03
92GO:0010148: transpiration3.78E-03
93GO:0016556: mRNA modification3.78E-03
94GO:0051415: interphase microtubule nucleation by interphase microtubule organizing center3.78E-03
95GO:0034508: centromere complex assembly3.78E-03
96GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly3.78E-03
97GO:0006166: purine ribonucleoside salvage3.78E-03
98GO:0007231: osmosensory signaling pathway3.78E-03
99GO:0030071: regulation of mitotic metaphase/anaphase transition3.78E-03
100GO:0051639: actin filament network formation3.78E-03
101GO:0009226: nucleotide-sugar biosynthetic process3.78E-03
102GO:0072488: ammonium transmembrane transport5.10E-03
103GO:0006021: inositol biosynthetic process5.10E-03
104GO:0006734: NADH metabolic process5.10E-03
105GO:0044205: 'de novo' UMP biosynthetic process5.10E-03
106GO:0007020: microtubule nucleation5.10E-03
107GO:0044206: UMP salvage5.10E-03
108GO:0048629: trichome patterning5.10E-03
109GO:0051764: actin crosslink formation5.10E-03
110GO:0051322: anaphase5.10E-03
111GO:0033500: carbohydrate homeostasis5.10E-03
112GO:0046656: folic acid biosynthetic process5.10E-03
113GO:0007010: cytoskeleton organization5.36E-03
114GO:0005992: trehalose biosynthetic process5.36E-03
115GO:0019344: cysteine biosynthetic process5.36E-03
116GO:0048527: lateral root development5.70E-03
117GO:0009904: chloroplast accumulation movement6.57E-03
118GO:0010236: plastoquinone biosynthetic process6.57E-03
119GO:0045038: protein import into chloroplast thylakoid membrane6.57E-03
120GO:0044209: AMP salvage6.57E-03
121GO:0010158: abaxial cell fate specification6.57E-03
122GO:0032876: negative regulation of DNA endoreduplication6.57E-03
123GO:0046785: microtubule polymerization6.57E-03
124GO:0016554: cytidine to uridine editing8.16E-03
125GO:0009920: cell plate formation involved in plant-type cell wall biogenesis8.16E-03
126GO:0006206: pyrimidine nucleobase metabolic process8.16E-03
127GO:0032973: amino acid export8.16E-03
128GO:0018258: protein O-linked glycosylation via hydroxyproline8.16E-03
129GO:0000741: karyogamy8.16E-03
130GO:0010405: arabinogalactan protein metabolic process8.16E-03
131GO:0010264: myo-inositol hexakisphosphate biosynthetic process8.16E-03
132GO:0006655: phosphatidylglycerol biosynthetic process8.16E-03
133GO:0010091: trichome branching8.50E-03
134GO:0009926: auxin polar transport8.89E-03
135GO:0008284: positive regulation of cell proliferation9.22E-03
136GO:0009789: positive regulation of abscisic acid-activated signaling pathway9.22E-03
137GO:0034389: lipid particle organization9.88E-03
138GO:0046654: tetrahydrofolate biosynthetic process9.88E-03
139GO:0009903: chloroplast avoidance movement9.88E-03
140GO:0030488: tRNA methylation9.88E-03
141GO:2000033: regulation of seed dormancy process9.88E-03
142GO:0048444: floral organ morphogenesis9.88E-03
143GO:0080086: stamen filament development9.88E-03
144GO:0009648: photoperiodism9.88E-03
145GO:0000226: microtubule cytoskeleton organization9.98E-03
146GO:0010087: phloem or xylem histogenesis9.98E-03
147GO:0009965: leaf morphogenesis1.03E-02
148GO:0015937: coenzyme A biosynthetic process1.17E-02
149GO:0010050: vegetative phase change1.17E-02
150GO:0010196: nonphotochemical quenching1.17E-02
151GO:0030307: positive regulation of cell growth1.17E-02
152GO:0006207: 'de novo' pyrimidine nucleobase biosynthetic process1.17E-02
153GO:0010103: stomatal complex morphogenesis1.17E-02
154GO:0009395: phospholipid catabolic process1.17E-02
155GO:0048528: post-embryonic root development1.17E-02
156GO:0009772: photosynthetic electron transport in photosystem II1.17E-02
157GO:0043090: amino acid import1.17E-02
158GO:0070370: cellular heat acclimation1.17E-02
159GO:0071555: cell wall organization1.19E-02
160GO:0008654: phospholipid biosynthetic process1.25E-02
161GO:0009585: red, far-red light phototransduction1.30E-02
162GO:0009850: auxin metabolic process1.37E-02
163GO:0010078: maintenance of root meristem identity1.37E-02
164GO:0009704: de-etiolation1.37E-02
165GO:0032875: regulation of DNA endoreduplication1.37E-02
166GO:2000070: regulation of response to water deprivation1.37E-02
167GO:0042255: ribosome assembly1.37E-02
168GO:0006353: DNA-templated transcription, termination1.37E-02
169GO:0070413: trehalose metabolism in response to stress1.37E-02
170GO:0000105: histidine biosynthetic process1.37E-02
171GO:0006402: mRNA catabolic process1.37E-02
172GO:1901657: glycosyl compound metabolic process1.52E-02
173GO:0009657: plastid organization1.57E-02
174GO:0043562: cellular response to nitrogen levels1.57E-02
175GO:0001558: regulation of cell growth1.57E-02
176GO:0006002: fructose 6-phosphate metabolic process1.57E-02
177GO:0009828: plant-type cell wall loosening1.62E-02
178GO:0016042: lipid catabolic process1.74E-02
179GO:0019432: triglyceride biosynthetic process1.79E-02
180GO:0006189: 'de novo' IMP biosynthetic process1.79E-02
181GO:0000902: cell morphogenesis1.79E-02
182GO:0015780: nucleotide-sugar transport1.79E-02
183GO:0009051: pentose-phosphate shunt, oxidative branch1.79E-02
184GO:0080144: amino acid homeostasis1.79E-02
185GO:0009740: gibberellic acid mediated signaling pathway1.89E-02
186GO:0006468: protein phosphorylation1.91E-02
187GO:0010018: far-red light signaling pathway2.01E-02
188GO:0010380: regulation of chlorophyll biosynthetic process2.01E-02
189GO:0071577: zinc II ion transmembrane transport2.01E-02
190GO:0042761: very long-chain fatty acid biosynthetic process2.01E-02
191GO:0009627: systemic acquired resistance2.17E-02
192GO:0009742: brassinosteroid mediated signaling pathway2.20E-02
193GO:0010162: seed dormancy process2.25E-02
194GO:0006535: cysteine biosynthetic process from serine2.25E-02
195GO:0000103: sulfate assimilation2.25E-02
196GO:0045036: protein targeting to chloroplast2.25E-02
197GO:0006949: syncytium formation2.25E-02
198GO:0009299: mRNA transcription2.25E-02
199GO:0010411: xyloglucan metabolic process2.29E-02
200GO:0009773: photosynthetic electron transport in photosystem I2.49E-02
201GO:1903507: negative regulation of nucleic acid-templated transcription2.49E-02
202GO:0006879: cellular iron ion homeostasis2.49E-02
203GO:0009684: indoleacetic acid biosynthetic process2.49E-02
204GO:0016024: CDP-diacylglycerol biosynthetic process2.75E-02
205GO:0010582: floral meristem determinacy2.75E-02
206GO:0006790: sulfur compound metabolic process2.75E-02
207GO:0010588: cotyledon vascular tissue pattern formation3.01E-02
208GO:0010628: positive regulation of gene expression3.01E-02
209GO:0006006: glucose metabolic process3.01E-02
210GO:0009785: blue light signaling pathway3.01E-02
211GO:0030036: actin cytoskeleton organization3.01E-02
212GO:0009725: response to hormone3.01E-02
213GO:0005975: carbohydrate metabolic process3.05E-02
214GO:0006865: amino acid transport3.08E-02
215GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway3.14E-02
216GO:0010020: chloroplast fission3.28E-02
217GO:0010207: photosystem II assembly3.28E-02
218GO:0048467: gynoecium development3.28E-02
219GO:0071732: cellular response to nitric oxide3.56E-02
220GO:0010030: positive regulation of seed germination3.56E-02
221GO:0070588: calcium ion transmembrane transport3.56E-02
222GO:0006839: mitochondrial transport3.67E-02
223GO:0006631: fatty acid metabolic process3.82E-02
224GO:0042753: positive regulation of circadian rhythm3.85E-02
225GO:0009833: plant-type primary cell wall biogenesis3.85E-02
226GO:0006071: glycerol metabolic process3.85E-02
227GO:0000162: tryptophan biosynthetic process3.85E-02
228GO:0010025: wax biosynthetic process3.85E-02
229GO:0045490: pectin catabolic process4.05E-02
230GO:0051017: actin filament bundle assembly4.14E-02
231GO:0030150: protein import into mitochondrial matrix4.14E-02
232GO:0010187: negative regulation of seed germination4.14E-02
233GO:0009944: polarity specification of adaxial/abaxial axis4.14E-02
234GO:0009116: nucleoside metabolic process4.14E-02
235GO:0008283: cell proliferation4.14E-02
236GO:0016310: phosphorylation4.21E-02
237GO:0006418: tRNA aminoacylation for protein translation4.44E-02
238GO:0006874: cellular calcium ion homeostasis4.44E-02
239GO:0043622: cortical microtubule organization4.44E-02
240GO:0051302: regulation of cell division4.44E-02
241GO:0009416: response to light stimulus4.74E-02
242GO:0003333: amino acid transmembrane transport4.75E-02
243GO:0016998: cell wall macromolecule catabolic process4.75E-02
244GO:0048511: rhythmic process4.75E-02
RankGO TermAdjusted P value
1GO:0004590: orotidine-5'-phosphate decarboxylase activity0.00E+00
2GO:0080176: xyloglucan 1,6-alpha-xylosidase activity0.00E+00
3GO:0046428: 1,4-dihydroxy-2-naphthoate octaprenyltransferase activity0.00E+00
4GO:0008756: o-succinylbenzoate-CoA ligase activity0.00E+00
5GO:0015276: ligand-gated ion channel activity0.00E+00
6GO:0004639: phosphoribosylaminoimidazolesuccinocarboxamide synthase activity0.00E+00
7GO:0004056: argininosuccinate lyase activity0.00E+00
8GO:0003949: 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide isomerase activity0.00E+00
9GO:0061634: alpha-D-xyloside xylohydrolase0.00E+00
10GO:0004588: orotate phosphoribosyltransferase activity0.00E+00
11GO:0016788: hydrolase activity, acting on ester bonds5.06E-04
12GO:0004675: transmembrane receptor protein serine/threonine kinase activity6.48E-04
13GO:0008066: glutamate receptor activity7.28E-04
14GO:0052906: tRNA (guanine(37)-N(1))-methyltransferase activity7.28E-04
15GO:0005290: L-histidine transmembrane transporter activity7.28E-04
16GO:0033946: xyloglucan-specific endo-beta-1,4-glucanase activity7.28E-04
17GO:0052857: NADPHX epimerase activity7.28E-04
18GO:0052856: NADHX epimerase activity7.28E-04
19GO:0050139: nicotinate-N-glucosyltransferase activity7.28E-04
20GO:0010945: CoA pyrophosphatase activity7.28E-04
21GO:0051777: ent-kaurenoate oxidase activity7.28E-04
22GO:0004733: pyridoxamine-phosphate oxidase activity7.28E-04
23GO:0030570: pectate lyase activity1.06E-03
24GO:0043022: ribosome binding1.11E-03
25GO:0004150: dihydroneopterin aldolase activity1.57E-03
26GO:0000064: L-ornithine transmembrane transporter activity1.57E-03
27GO:0015172: acidic amino acid transmembrane transporter activity1.57E-03
28GO:0004512: inositol-3-phosphate synthase activity1.57E-03
29GO:0050017: L-3-cyanoalanine synthase activity1.57E-03
30GO:0017118: lipoyltransferase activity1.57E-03
31GO:0043425: bHLH transcription factor binding1.57E-03
32GO:0050362: L-tryptophan:2-oxoglutarate aminotransferase activity1.57E-03
33GO:0009977: proton motive force dependent protein transmembrane transporter activity1.57E-03
34GO:0033741: adenylyl-sulfate reductase (glutathione) activity1.57E-03
35GO:0102083: 7,8-dihydromonapterin aldolase activity1.57E-03
36GO:0009973: adenylyl-sulfate reductase activity1.57E-03
37GO:0004817: cysteine-tRNA ligase activity1.57E-03
38GO:0080097: L-tryptophan:pyruvate aminotransferase activity1.57E-03
39GO:0004604: phosphoadenylyl-sulfate reductase (thioredoxin) activity1.57E-03
40GO:0003747: translation release factor activity1.62E-03
41GO:0004805: trehalose-phosphatase activity2.25E-03
42GO:0070330: aromatase activity2.60E-03
43GO:0004557: alpha-galactosidase activity2.60E-03
44GO:0052692: raffinose alpha-galactosidase activity2.60E-03
45GO:0080054: low-affinity nitrate transmembrane transporter activity2.60E-03
46GO:0047372: acylglycerol lipase activity2.61E-03
47GO:0008017: microtubule binding3.19E-03
48GO:0005262: calcium channel activity3.40E-03
49GO:0008893: guanosine-3',5'-bis(diphosphate) 3'-diphosphatase activity3.78E-03
50GO:0016149: translation release factor activity, codon specific3.78E-03
51GO:0017172: cysteine dioxygenase activity3.78E-03
52GO:0015181: arginine transmembrane transporter activity3.78E-03
53GO:0047627: adenylylsulfatase activity3.78E-03
54GO:0015189: L-lysine transmembrane transporter activity3.78E-03
55GO:0003999: adenine phosphoribosyltransferase activity3.78E-03
56GO:0015175: neutral amino acid transmembrane transporter activity3.78E-03
57GO:0008083: growth factor activity3.85E-03
58GO:0043015: gamma-tubulin binding5.10E-03
59GO:0019199: transmembrane receptor protein kinase activity5.10E-03
60GO:0042277: peptide binding5.10E-03
61GO:0046556: alpha-L-arabinofuranosidase activity5.10E-03
62GO:0004659: prenyltransferase activity5.10E-03
63GO:0004845: uracil phosphoribosyltransferase activity5.10E-03
64GO:0004345: glucose-6-phosphate dehydrogenase activity5.10E-03
65GO:0004045: aminoacyl-tRNA hydrolase activity5.10E-03
66GO:0080032: methyl jasmonate esterase activity5.10E-03
67GO:0009044: xylan 1,4-beta-xylosidase activity5.10E-03
68GO:0031418: L-ascorbic acid binding5.36E-03
69GO:0004176: ATP-dependent peptidase activity6.52E-03
70GO:0016846: carbon-sulfur lyase activity6.57E-03
71GO:0018685: alkane 1-monooxygenase activity6.57E-03
72GO:0016829: lyase activity7.77E-03
73GO:0016208: AMP binding8.16E-03
74GO:0042578: phosphoric ester hydrolase activity8.16E-03
75GO:0008519: ammonium transmembrane transporter activity8.16E-03
76GO:0004605: phosphatidate cytidylyltransferase activity8.16E-03
77GO:1990714: hydroxyproline O-galactosyltransferase activity8.16E-03
78GO:0000210: NAD+ diphosphatase activity8.16E-03
79GO:0003727: single-stranded RNA binding8.50E-03
80GO:0003730: mRNA 3'-UTR binding9.88E-03
81GO:0004144: diacylglycerol O-acyltransferase activity9.88E-03
82GO:0004656: procollagen-proline 4-dioxygenase activity9.88E-03
83GO:0004723: calcium-dependent protein serine/threonine phosphatase activity9.88E-03
84GO:0004124: cysteine synthase activity9.88E-03
85GO:0008195: phosphatidate phosphatase activity9.88E-03
86GO:0004849: uridine kinase activity9.88E-03
87GO:0052689: carboxylic ester hydrolase activity1.11E-02
88GO:0010181: FMN binding1.16E-02
89GO:0019899: enzyme binding1.17E-02
90GO:0003872: 6-phosphofructokinase activity1.17E-02
91GO:0005338: nucleotide-sugar transmembrane transporter activity1.17E-02
92GO:0015171: amino acid transmembrane transporter activity1.49E-02
93GO:0009815: 1-aminocyclopropane-1-carboxylate oxidase activity1.79E-02
94GO:0022857: transmembrane transporter activity1.89E-02
95GO:0005381: iron ion transmembrane transporter activity2.01E-02
96GO:0004713: protein tyrosine kinase activity2.25E-02
97GO:0102483: scopolin beta-glucosidase activity2.29E-02
98GO:0008327: methyl-CpG binding2.49E-02
99GO:0000976: transcription regulatory region sequence-specific DNA binding2.75E-02
100GO:0016301: kinase activity2.87E-02
101GO:0044212: transcription regulatory region DNA binding2.88E-02
102GO:0016614: oxidoreductase activity, acting on CH-OH group of donors2.94E-02
103GO:0004022: alcohol dehydrogenase (NAD) activity3.01E-02
104GO:0004565: beta-galactosidase activity3.01E-02
105GO:0015266: protein channel activity3.01E-02
106GO:0004089: carbonate dehydratase activity3.01E-02
107GO:0009982: pseudouridine synthase activity3.01E-02
108GO:0042973: glucan endo-1,3-beta-D-glucosidase activity3.28E-02
109GO:0003993: acid phosphatase activity3.36E-02
110GO:0008422: beta-glucosidase activity3.51E-02
111GO:0004970: ionotropic glutamate receptor activity3.56E-02
112GO:0005217: intracellular ligand-gated ion channel activity3.56E-02
113GO:0003714: transcription corepressor activity4.14E-02
114GO:0004185: serine-type carboxypeptidase activity4.14E-02
115GO:0005385: zinc ion transmembrane transporter activity4.14E-02
116GO:0005528: FK506 binding4.14E-02
117GO:0008324: cation transmembrane transporter activity4.44E-02
118GO:0051087: chaperone binding4.44E-02
119GO:0043621: protein self-association4.48E-02
120GO:0016757: transferase activity, transferring glycosyl groups4.56E-02
121GO:0019706: protein-cysteine S-palmitoyltransferase activity4.75E-02
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Gene type



Gene DE type