co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT5G02250

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0090322: regulation of superoxide metabolic process	0.00E+00
2	GO:1901528: hydrogen peroxide mediated signaling pathway involved in stomatal movement	0.00E+00
3	GO:0080127: fruit septum development	0.00E+00
4	GO:0046486: glycerolipid metabolic process	0.00E+00
5	GO:0019988: charged-tRNA amino acid modification	0.00E+00
6	GO:0090615: mitochondrial mRNA processing	0.00E+00
7	GO:0000492: box C/D snoRNP assembly	0.00E+00
8	GO:0042794: rRNA transcription from plastid promoter	0.00E+00
9	GO:0010323: negative regulation of isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway	0.00E+00
10	GO:0045014: negative regulation of transcription by glucose	0.00E+00
11	GO:0000491: small nucleolar ribonucleoprotein complex assembly	0.00E+00
12	GO:0090627: plant epidermal cell differentiation	0.00E+00
13	GO:0009658: chloroplast organization	7.21E-05
14	GO:0042793: transcription from plastid promoter	1.13E-04
15	GO:0042255: ribosome assembly	2.58E-04
16	GO:0046620: regulation of organ growth	2.58E-04
17	GO:0006353: DNA-templated transcription, termination	2.58E-04
18	GO:0080112: seed growth	2.70E-04
19	GO:1903866: palisade mesophyll development	2.70E-04
20	GO:1905039: carboxylic acid transmembrane transport	2.70E-04
21	GO:1905200: gibberellic acid transmembrane transport	2.70E-04
22	GO:0080156: mitochondrial mRNA modification	3.18E-04
23	GO:1900865: chloroplast RNA modification	4.56E-04
24	GO:0006949: syncytium formation	5.32E-04
25	GO:0010541: acropetal auxin transport	5.94E-04
26	GO:0080009: mRNA methylation	5.94E-04
27	GO:0010275: NAD(P)H dehydrogenase complex assembly	5.94E-04
28	GO:1901529: positive regulation of anion channel activity	5.94E-04
29	GO:0010569: regulation of double-strand break repair via homologous recombination	5.94E-04
30	GO:0048731: system development	5.94E-04
31	GO:0006650: glycerophospholipid metabolic process	5.94E-04
32	GO:2000071: regulation of defense response by callose deposition	5.94E-04
33	GO:0090391: granum assembly	9.62E-04
34	GO:0006518: peptide metabolic process	9.62E-04
35	GO:1901527: abscisic acid-activated signaling pathway involved in stomatal movement	9.62E-04
36	GO:0046168: glycerol-3-phosphate catabolic process	9.62E-04
37	GO:0080188: RNA-directed DNA methylation	9.99E-04
38	GO:0040008: regulation of growth	1.07E-03
39	GO:0045017: glycerolipid biosynthetic process	1.38E-03
40	GO:0010371: regulation of gibberellin biosynthetic process	1.38E-03
41	GO:0009102: biotin biosynthetic process	1.38E-03
42	GO:0007276: gamete generation	1.38E-03
43	GO:0043481: anthocyanin accumulation in tissues in response to UV light	1.38E-03
44	GO:0006072: glycerol-3-phosphate metabolic process	1.38E-03
45	GO:0009733: response to auxin	1.46E-03
46	GO:2000022: regulation of jasmonic acid mediated signaling pathway	1.62E-03
47	GO:1900864: mitochondrial RNA modification	1.84E-03
48	GO:0006221: pyrimidine nucleotide biosynthetic process	1.84E-03
49	GO:0042127: regulation of cell proliferation	1.92E-03
50	GO:0006364: rRNA processing	1.94E-03
51	GO:0008033: tRNA processing	2.24E-03
52	GO:0016558: protein import into peroxisome matrix	2.35E-03
53	GO:0048497: maintenance of floral organ identity	2.35E-03
54	GO:0016123: xanthophyll biosynthetic process	2.35E-03
55	GO:0016120: carotene biosynthetic process	2.35E-03
56	GO:0080110: sporopollenin biosynthetic process	2.35E-03
57	GO:0016131: brassinosteroid metabolic process	2.35E-03
58	GO:0009734: auxin-activated signaling pathway	2.41E-03
59	GO:0010305: leaf vascular tissue pattern formation	2.42E-03
60	GO:0003006: developmental process involved in reproduction	2.90E-03
61	GO:0009643: photosynthetic acclimation	2.90E-03
62	GO:0006014: D-ribose metabolic process	2.90E-03
63	GO:0016554: cytidine to uridine editing	2.90E-03
64	GO:0009913: epidermal cell differentiation	2.90E-03
65	GO:0060918: auxin transport	2.90E-03
66	GO:0032502: developmental process	3.18E-03
67	GO:0000462: maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	3.49E-03
68	GO:0009942: longitudinal axis specification	3.49E-03
69	GO:0010019: chloroplast-nucleus signaling pathway	3.49E-03
70	GO:0000079: regulation of cyclin-dependent protein serine/threonine kinase activity	3.49E-03
71	GO:0010310: regulation of hydrogen peroxide metabolic process	3.49E-03
72	GO:0009828: plant-type cell wall loosening	3.61E-03
73	GO:0006401: RNA catabolic process	4.12E-03
74	GO:0006955: immune response	4.12E-03
75	GO:1900056: negative regulation of leaf senescence	4.12E-03
76	GO:0010098: suspensor development	4.12E-03
77	GO:0010492: maintenance of shoot apical meristem identity	4.77E-03
78	GO:0052543: callose deposition in cell wall	4.77E-03
79	GO:0034968: histone lysine methylation	4.77E-03
80	GO:0009787: regulation of abscisic acid-activated signaling pathway	4.77E-03
81	GO:0009642: response to light intensity	4.77E-03
82	GO:0006402: mRNA catabolic process	4.77E-03
83	GO:0032544: plastid translation	5.47E-03
84	GO:0007389: pattern specification process	5.47E-03
85	GO:0009827: plant-type cell wall modification	5.47E-03
86	GO:0010497: plasmodesmata-mediated intercellular transport	5.47E-03
87	GO:0019430: removal of superoxide radicals	5.47E-03
88	GO:0006397: mRNA processing	5.99E-03
89	GO:0000373: Group II intron splicing	6.20E-03
90	GO:0048589: developmental growth	6.20E-03
91	GO:0048507: meristem development	6.20E-03
92	GO:0031425: chloroplast RNA processing	6.96E-03
93	GO:0009793: embryo development ending in seed dormancy	7.04E-03
94	GO:0006535: cysteine biosynthetic process from serine	7.75E-03
95	GO:0048829: root cap development	7.75E-03
96	GO:0009641: shade avoidance	7.75E-03
97	GO:0016441: posttranscriptional gene silencing	7.75E-03
98	GO:0006259: DNA metabolic process	7.75E-03
99	GO:1903507: negative regulation of nucleic acid-templated transcription	8.58E-03
100	GO:0009750: response to fructose	8.58E-03
101	GO:0048765: root hair cell differentiation	8.58E-03
102	GO:0046856: phosphatidylinositol dephosphorylation	8.58E-03
103	GO:0009682: induced systemic resistance	8.58E-03
104	GO:0015770: sucrose transport	8.58E-03
105	GO:0006265: DNA topological change	8.58E-03
106	GO:0010152: pollen maturation	9.44E-03
107	GO:0012501: programmed cell death	9.44E-03
108	GO:0045037: protein import into chloroplast stroma	9.44E-03
109	GO:0010582: floral meristem determinacy	9.44E-03
110	GO:0010588: cotyledon vascular tissue pattern formation	1.03E-02
111	GO:0010102: lateral root morphogenesis	1.03E-02
112	GO:0031347: regulation of defense response	1.11E-02
113	GO:0009887: animal organ morphogenesis	1.12E-02
114	GO:0010540: basipetal auxin transport	1.12E-02
115	GO:0048467: gynoecium development	1.12E-02
116	GO:0010020: chloroplast fission	1.12E-02
117	GO:0009664: plant-type cell wall organization	1.15E-02
118	GO:0009901: anther dehiscence	1.22E-02
119	GO:0006636: unsaturated fatty acid biosynthetic process	1.32E-02
120	GO:2000377: regulation of reactive oxygen species metabolic process	1.42E-02
121	GO:0019344: cysteine biosynthetic process	1.42E-02
122	GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway	1.46E-02
123	GO:0048367: shoot system development	1.52E-02
124	GO:0019953: sexual reproduction	1.52E-02
125	GO:0016114: terpenoid biosynthetic process	1.62E-02
126	GO:0003333: amino acid transmembrane transport	1.62E-02
127	GO:0016998: cell wall macromolecule catabolic process	1.62E-02
128	GO:0010431: seed maturation	1.62E-02
129	GO:0045893: positive regulation of transcription, DNA-templated	1.65E-02
130	GO:0030245: cellulose catabolic process	1.73E-02
131	GO:0009831: plant-type cell wall modification involved in multidimensional cell growth	1.84E-02
132	GO:0010584: pollen exine formation	1.95E-02
133	GO:0048443: stamen development	1.95E-02
134	GO:0010091: trichome branching	1.95E-02
135	GO:0080022: primary root development	2.19E-02
136	GO:0010501: RNA secondary structure unwinding	2.19E-02
137	GO:0006355: regulation of transcription, DNA-templated	2.19E-02
138	GO:0010087: phloem or xylem histogenesis	2.19E-02
139	GO:0010118: stomatal movement	2.19E-02
140	GO:0042335: cuticle development	2.19E-02
141	GO:0009741: response to brassinosteroid	2.31E-02
142	GO:0010268: brassinosteroid homeostasis	2.31E-02
143	GO:0071472: cellular response to salt stress	2.31E-02
144	GO:0007018: microtubule-based movement	2.43E-02
145	GO:0007059: chromosome segregation	2.43E-02
146	GO:0048825: cotyledon development	2.55E-02
147	GO:0009749: response to glucose	2.55E-02
148	GO:0019252: starch biosynthetic process	2.55E-02
149	GO:0008654: phospholipid biosynthetic process	2.55E-02
150	GO:0006635: fatty acid beta-oxidation	2.68E-02
151	GO:0002229: defense response to oomycetes	2.68E-02
152	GO:0010583: response to cyclopentenone	2.81E-02
153	GO:0031047: gene silencing by RNA	2.81E-02
154	GO:0030163: protein catabolic process	2.94E-02
155	GO:0045490: pectin catabolic process	3.06E-02
156	GO:0006464: cellular protein modification process	3.07E-02
157	GO:0019760: glucosinolate metabolic process	3.07E-02
158	GO:0009451: RNA modification	3.13E-02
159	GO:0010027: thylakoid membrane organization	3.48E-02
160	GO:0008380: RNA splicing	3.65E-02
161	GO:0009627: systemic acquired resistance	3.77E-02
162	GO:0015995: chlorophyll biosynthetic process	3.91E-02
163	GO:0016311: dephosphorylation	4.06E-02
164	GO:0006351: transcription, DNA-templated	4.46E-02
165	GO:0010218: response to far red light	4.51E-02
166	GO:0006811: ion transport	4.51E-02
167	GO:0009826: unidimensional cell growth	4.54E-02
168	GO:0009555: pollen development	4.64E-02
169	GO:0006865: amino acid transport	4.82E-02
170	GO:0009867: jasmonic acid mediated signaling pathway	4.97E-02

Rank	GO Term	Adjusted P value
1	GO:0004835: tubulin-tyrosine ligase activity	0.00E+00
2	GO:0004015: adenosylmethionine-8-amino-7-oxononanoate transaminase activity	0.00E+00
3	GO:0043399: tRNA A64-2'-O-ribosylphosphate transferase activity	0.00E+00
4	GO:0016763: transferase activity, transferring pentosyl groups	0.00E+00
5	GO:0004141: dethiobiotin synthase activity	0.00E+00
6	GO:0000979: RNA polymerase II core promoter sequence-specific DNA binding	0.00E+00
7	GO:0003723: RNA binding	1.78E-05
8	GO:0008395: steroid hydroxylase activity	2.70E-04
9	GO:0034335: DNA supercoiling activity	2.70E-04
10	GO:0016901: oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor	2.70E-04
11	GO:0004654: polyribonucleotide nucleotidyltransferase activity	2.70E-04
12	GO:0004016: adenylate cyclase activity	2.70E-04
13	GO:1905201: gibberellin transmembrane transporter activity	2.70E-04
14	GO:0042834: peptidoglycan binding	2.70E-04
15	GO:0016422: mRNA (2'-O-methyladenosine-N6-)-methyltransferase activity	2.70E-04
16	GO:0042389: omega-3 fatty acid desaturase activity	5.94E-04
17	GO:0004809: tRNA (guanine-N2-)-methyltransferase activity	5.94E-04
18	GO:0008661: 1-deoxy-D-xylulose-5-phosphate synthase activity	5.94E-04
19	GO:0000179: rRNA (adenine-N6,N6-)-dimethyltransferase activity	5.94E-04
20	GO:0004367: glycerol-3-phosphate dehydrogenase [NAD+] activity	9.62E-04
21	GO:0009041: uridylate kinase activity	1.38E-03
22	GO:0003916: DNA topoisomerase activity	1.38E-03
23	GO:0004519: endonuclease activity	1.53E-03
24	GO:0030570: pectate lyase activity	1.76E-03
25	GO:0010011: auxin binding	1.84E-03
26	GO:0010328: auxin influx transmembrane transporter activity	1.84E-03
27	GO:0003727: single-stranded RNA binding	1.92E-03
28	GO:0008289: lipid binding	2.36E-03
29	GO:0034485: phosphatidylinositol-3,4,5-trisphosphate 5-phosphatase activity	2.90E-03
30	GO:0004784: superoxide dismutase activity	2.90E-03
31	GO:0004124: cysteine synthase activity	3.49E-03
32	GO:0004747: ribokinase activity	3.49E-03
33	GO:0019843: rRNA binding	4.04E-03
34	GO:0030515: snoRNA binding	4.12E-03
35	GO:0008865: fructokinase activity	4.77E-03
36	GO:0008173: RNA methyltransferase activity	5.47E-03
37	GO:0003918: DNA topoisomerase type II (ATP-hydrolyzing) activity	5.47E-03
38	GO:0003724: RNA helicase activity	5.47E-03
39	GO:0016717: oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water	5.47E-03
40	GO:0008515: sucrose transmembrane transporter activity	8.58E-03
41	GO:0004439: phosphatidylinositol-4,5-bisphosphate 5-phosphatase activity	9.44E-03
42	GO:0009982: pseudouridine synthase activity	1.03E-02
43	GO:0000175: 3'-5'-exoribonuclease activity	1.03E-02
44	GO:0003725: double-stranded RNA binding	1.03E-02
45	GO:0016887: ATPase activity	1.09E-02
46	GO:0004190: aspartic-type endopeptidase activity	1.22E-02
47	GO:0051119: sugar transmembrane transporter activity	1.22E-02
48	GO:0003712: transcription cofactor activity	1.22E-02
49	GO:0003690: double-stranded DNA binding	1.28E-02
50	GO:0003714: transcription corepressor activity	1.42E-02
51	GO:0016874: ligase activity	1.67E-02
52	GO:0003779: actin binding	1.72E-02
53	GO:0008810: cellulase activity	1.84E-02
54	GO:0008026: ATP-dependent helicase activity	1.88E-02
55	GO:0005102: receptor binding	2.07E-02
56	GO:0018024: histone-lysine N-methyltransferase activity	2.07E-02
57	GO:0003677: DNA binding	2.32E-02
58	GO:0003676: nucleic acid binding	2.37E-02
59	GO:0050662: coenzyme binding	2.43E-02
60	GO:0030170: pyridoxal phosphate binding	2.46E-02
61	GO:0000977: RNA polymerase II regulatory region sequence-specific DNA binding	2.53E-02
62	GO:0019901: protein kinase binding	2.55E-02
63	GO:0048038: quinone binding	2.68E-02
64	GO:0016791: phosphatase activity	3.07E-02
65	GO:0005200: structural constituent of cytoskeleton	3.21E-02
66	GO:0043565: sequence-specific DNA binding	3.68E-02
67	GO:0005515: protein binding	3.77E-02
68	GO:0004004: ATP-dependent RNA helicase activity	3.91E-02
69	GO:0008757: S-adenosylmethionine-dependent methyltransferase activity	4.06E-02
70	GO:0003700: transcription factor activity, sequence-specific DNA binding	4.11E-02
71	GO:0005096: GTPase activator activity	4.36E-02
72	GO:0005215: transporter activity	4.39E-02
73	GO:0004693: cyclin-dependent protein serine/threonine kinase activity	4.51E-02
74	GO:0004222: metalloendopeptidase activity	4.51E-02
75	GO:0008168: methyltransferase activity	4.54E-02
76	GO:0003697: single-stranded DNA binding	4.97E-02