Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT5G01090

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:1903508: positive regulation of nucleic acid-templated transcription0.00E+00
2GO:0071474: cellular hyperosmotic response0.00E+00
3GO:2001294: malonyl-CoA catabolic process0.00E+00
4GO:0051484: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway involved in terpenoid biosynthetic process0.00E+00
5GO:0043488: regulation of mRNA stability0.00E+00
6GO:0017038: protein import0.00E+00
7GO:0031054: pre-miRNA processing0.00E+00
8GO:0090706: specification of plant organ position0.00E+00
9GO:0090279: regulation of calcium ion import0.00E+00
10GO:0031116: positive regulation of microtubule polymerization0.00E+00
11GO:0033494: ferulate metabolic process0.00E+00
12GO:1900865: chloroplast RNA modification7.51E-05
13GO:0006021: inositol biosynthetic process1.45E-04
14GO:0016024: CDP-diacylglycerol biosynthetic process1.48E-04
15GO:0010143: cutin biosynthetic process2.13E-04
16GO:0045038: protein import into chloroplast thylakoid membrane2.22E-04
17GO:1902183: regulation of shoot apical meristem development2.22E-04
18GO:0010158: abaxial cell fate specification2.22E-04
19GO:0006655: phosphatidylglycerol biosynthetic process3.14E-04
20GO:0010190: cytochrome b6f complex assembly3.14E-04
21GO:0015995: chlorophyll biosynthetic process3.16E-04
22GO:0043266: regulation of potassium ion transport5.15E-04
23GO:0000481: maturation of 5S rRNA5.15E-04
24GO:0006659: phosphatidylserine biosynthetic process5.15E-04
25GO:0015801: aromatic amino acid transport5.15E-04
26GO:0043686: co-translational protein modification5.15E-04
27GO:2000021: regulation of ion homeostasis5.15E-04
28GO:1902458: positive regulation of stomatal opening5.15E-04
29GO:0034337: RNA folding5.15E-04
30GO:0010450: inflorescence meristem growth5.15E-04
31GO:0051171: regulation of nitrogen compound metabolic process5.15E-04
32GO:0010362: negative regulation of anion channel activity by blue light5.15E-04
33GO:0015969: guanosine tetraphosphate metabolic process5.15E-04
34GO:0031426: polycistronic mRNA processing5.15E-04
35GO:0071028: nuclear mRNA surveillance5.15E-04
36GO:0009395: phospholipid catabolic process5.37E-04
37GO:0009416: response to light stimulus6.28E-04
38GO:0006605: protein targeting6.69E-04
39GO:0010206: photosystem II repair9.74E-04
40GO:2000024: regulation of leaf development9.74E-04
41GO:0007154: cell communication1.11E-03
42GO:0006435: threonyl-tRNA aminoacylation1.11E-03
43GO:0031125: rRNA 3'-end processing1.11E-03
44GO:0010155: regulation of proton transport1.11E-03
45GO:1903426: regulation of reactive oxygen species biosynthetic process1.11E-03
46GO:0015804: neutral amino acid transport1.11E-03
47GO:0071051: polyadenylation-dependent snoRNA 3'-end processing1.11E-03
48GO:0051262: protein tetramerization1.11E-03
49GO:0034475: U4 snRNA 3'-end processing1.11E-03
50GO:1900871: chloroplast mRNA modification1.11E-03
51GO:0030187: melatonin biosynthetic process1.11E-03
52GO:0009684: indoleacetic acid biosynthetic process1.55E-03
53GO:0010027: thylakoid membrane organization1.71E-03
54GO:0080055: low-affinity nitrate transport1.81E-03
55GO:0009405: pathogenesis1.81E-03
56GO:0051604: protein maturation1.81E-03
57GO:0001578: microtubule bundle formation1.81E-03
58GO:0045493: xylan catabolic process1.81E-03
59GO:0006753: nucleoside phosphate metabolic process1.81E-03
60GO:0045165: cell fate commitment1.81E-03
61GO:0016075: rRNA catabolic process1.81E-03
62GO:0033591: response to L-ascorbic acid1.81E-03
63GO:0034427: nuclear-transcribed mRNA catabolic process, exonucleolytic, 3'-5'1.81E-03
64GO:0010589: leaf proximal/distal pattern formation1.81E-03
65GO:0055114: oxidation-reduction process2.16E-03
66GO:0010207: photosystem II assembly2.27E-03
67GO:0090351: seedling development2.55E-03
68GO:0019853: L-ascorbic acid biosynthetic process2.55E-03
69GO:0006168: adenine salvage2.63E-03
70GO:0006164: purine nucleotide biosynthetic process2.63E-03
71GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly2.63E-03
72GO:0006166: purine ribonucleoside salvage2.63E-03
73GO:0009102: biotin biosynthetic process2.63E-03
74GO:0009647: skotomorphogenesis2.63E-03
75GO:0010239: chloroplast mRNA processing2.63E-03
76GO:0010255: glucose mediated signaling pathway2.63E-03
77GO:0046739: transport of virus in multicellular host2.63E-03
78GO:0042753: positive regulation of circadian rhythm2.84E-03
79GO:0009944: polarity specification of adaxial/abaxial axis3.16E-03
80GO:0007017: microtubule-based process3.49E-03
81GO:0071483: cellular response to blue light3.54E-03
82GO:0007020: microtubule nucleation3.54E-03
83GO:0008295: spermidine biosynthetic process3.54E-03
84GO:0032366: intracellular sterol transport3.54E-03
85GO:0010109: regulation of photosynthesis3.54E-03
86GO:0051322: anaphase3.54E-03
87GO:0009765: photosynthesis, light harvesting3.54E-03
88GO:2000306: positive regulation of photomorphogenesis3.54E-03
89GO:0035279: mRNA cleavage involved in gene silencing by miRNA3.54E-03
90GO:0003333: amino acid transmembrane transport3.83E-03
91GO:0048511: rhythmic process3.83E-03
92GO:0006631: fatty acid metabolic process4.06E-03
93GO:0044550: secondary metabolite biosynthetic process4.23E-03
94GO:0009904: chloroplast accumulation movement4.54E-03
95GO:0010236: plastoquinone biosynthetic process4.54E-03
96GO:0016120: carotene biosynthetic process4.54E-03
97GO:0031365: N-terminal protein amino acid modification4.54E-03
98GO:0016123: xanthophyll biosynthetic process4.54E-03
99GO:0044209: AMP salvage4.54E-03
100GO:0046785: microtubule polymerization4.54E-03
101GO:0018258: protein O-linked glycosylation via hydroxyproline5.63E-03
102GO:0000741: karyogamy5.63E-03
103GO:0046855: inositol phosphate dephosphorylation5.63E-03
104GO:0010405: arabinogalactan protein metabolic process5.63E-03
105GO:0010264: myo-inositol hexakisphosphate biosynthetic process5.63E-03
106GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway5.63E-03
107GO:0016554: cytidine to uridine editing5.63E-03
108GO:0045962: positive regulation of development, heterochronic5.63E-03
109GO:0045489: pectin biosynthetic process6.31E-03
110GO:0010154: fruit development6.31E-03
111GO:0007018: microtubule-based movement6.78E-03
112GO:0048280: vesicle fusion with Golgi apparatus6.79E-03
113GO:0009099: valine biosynthetic process6.79E-03
114GO:0009903: chloroplast avoidance movement6.79E-03
115GO:0030488: tRNA methylation6.79E-03
116GO:0009648: photoperiodism6.79E-03
117GO:0042372: phylloquinone biosynthetic process6.79E-03
118GO:0009082: branched-chain amino acid biosynthetic process6.79E-03
119GO:0009791: post-embryonic development7.28E-03
120GO:0035196: production of miRNAs involved in gene silencing by miRNA8.04E-03
121GO:0048528: post-embryonic root development8.04E-03
122GO:0015937: coenzyme A biosynthetic process8.04E-03
123GO:0010583: response to cyclopentenone8.34E-03
124GO:0016032: viral process8.34E-03
125GO:0010078: maintenance of root meristem identity9.36E-03
126GO:0032508: DNA duplex unwinding9.36E-03
127GO:2000070: regulation of response to water deprivation9.36E-03
128GO:0016559: peroxisome fission9.36E-03
129GO:0007155: cell adhesion9.36E-03
130GO:0009097: isoleucine biosynthetic process1.08E-02
131GO:0007186: G-protein coupled receptor signaling pathway1.08E-02
132GO:0043562: cellular response to nitrogen levels1.08E-02
133GO:0010093: specification of floral organ identity1.08E-02
134GO:0071482: cellular response to light stimulus1.08E-02
135GO:0022900: electron transport chain1.08E-02
136GO:0015996: chlorophyll catabolic process1.08E-02
137GO:0006783: heme biosynthetic process1.22E-02
138GO:0048507: meristem development1.22E-02
139GO:0006189: 'de novo' IMP biosynthetic process1.22E-02
140GO:0009821: alkaloid biosynthetic process1.22E-02
141GO:0009627: systemic acquired resistance1.27E-02
142GO:0010380: regulation of chlorophyll biosynthetic process1.38E-02
143GO:0010267: production of ta-siRNAs involved in RNA interference1.38E-02
144GO:0009638: phototropism1.38E-02
145GO:0009098: leucine biosynthetic process1.38E-02
146GO:0010018: far-red light signaling pathway1.38E-02
147GO:0018298: protein-chromophore linkage1.48E-02
148GO:0006896: Golgi to vacuole transport1.54E-02
149GO:0006782: protoporphyrinogen IX biosynthetic process1.54E-02
150GO:0043069: negative regulation of programmed cell death1.54E-02
151GO:0045036: protein targeting to chloroplast1.54E-02
152GO:0006949: syncytium formation1.54E-02
153GO:0006811: ion transport1.64E-02
154GO:1903507: negative regulation of nucleic acid-templated transcription1.70E-02
155GO:0006352: DNA-templated transcription, initiation1.70E-02
156GO:0018119: peptidyl-cysteine S-nitrosylation1.70E-02
157GO:0006415: translational termination1.70E-02
158GO:0000038: very long-chain fatty acid metabolic process1.70E-02
159GO:0019684: photosynthesis, light reaction1.70E-02
160GO:0009089: lysine biosynthetic process via diaminopimelate1.70E-02
161GO:0007568: aging1.72E-02
162GO:0006865: amino acid transport1.80E-02
163GO:0045037: protein import into chloroplast stroma1.88E-02
164GO:0009637: response to blue light1.88E-02
165GO:0006790: sulfur compound metabolic process1.88E-02
166GO:0006413: translational initiation1.91E-02
167GO:0006006: glucose metabolic process2.05E-02
168GO:0009785: blue light signaling pathway2.05E-02
169GO:0030036: actin cytoskeleton organization2.05E-02
170GO:0009718: anthocyanin-containing compound biosynthetic process2.05E-02
171GO:0009767: photosynthetic electron transport chain2.05E-02
172GO:0030048: actin filament-based movement2.05E-02
173GO:0010588: cotyledon vascular tissue pattern formation2.05E-02
174GO:0007623: circadian rhythm2.08E-02
175GO:0010020: chloroplast fission2.24E-02
176GO:0009933: meristem structural organization2.24E-02
177GO:0019253: reductive pentose-phosphate cycle2.24E-02
178GO:0048467: gynoecium development2.24E-02
179GO:0006541: glutamine metabolic process2.24E-02
180GO:0010030: positive regulation of seed germination2.43E-02
181GO:0046854: phosphatidylinositol phosphorylation2.43E-02
182GO:0042343: indole glucosinolate metabolic process2.43E-02
183GO:0000162: tryptophan biosynthetic process2.62E-02
184GO:0010025: wax biosynthetic process2.62E-02
185GO:0000027: ribosomal large subunit assembly2.83E-02
186GO:0007010: cytoskeleton organization2.83E-02
187GO:0010187: negative regulation of seed germination2.83E-02
188GO:0080147: root hair cell development2.83E-02
189GO:0043622: cortical microtubule organization3.03E-02
190GO:0008299: isoprenoid biosynthetic process3.03E-02
191GO:0009664: plant-type cell wall organization3.06E-02
192GO:0098542: defense response to other organism3.24E-02
193GO:0061077: chaperone-mediated protein folding3.24E-02
194GO:0009585: red, far-red light phototransduction3.28E-02
195GO:0080092: regulation of pollen tube growth3.46E-02
196GO:0019748: secondary metabolic process3.46E-02
197GO:2000022: regulation of jasmonic acid mediated signaling pathway3.46E-02
198GO:0009658: chloroplast organization3.59E-02
199GO:0006012: galactose metabolic process3.68E-02
200GO:0009831: plant-type cell wall modification involved in multidimensional cell growth3.68E-02
201GO:0009306: protein secretion3.90E-02
202GO:0019722: calcium-mediated signaling3.90E-02
203GO:0016117: carotenoid biosynthetic process4.13E-02
204GO:0009789: positive regulation of abscisic acid-activated signaling pathway4.13E-02
205GO:0042147: retrograde transport, endosome to Golgi4.13E-02
206GO:0000271: polysaccharide biosynthetic process4.37E-02
207GO:0080022: primary root development4.37E-02
208GO:0010087: phloem or xylem histogenesis4.37E-02
209GO:0042631: cellular response to water deprivation4.37E-02
210GO:0006508: proteolysis4.38E-02
211GO:0010197: polar nucleus fusion4.61E-02
212GO:0010305: leaf vascular tissue pattern formation4.61E-02
213GO:0010182: sugar mediated signaling pathway4.61E-02
214GO:0009741: response to brassinosteroid4.61E-02
215GO:0009958: positive gravitropism4.61E-02
216GO:0006520: cellular amino acid metabolic process4.61E-02
217GO:0006396: RNA processing4.79E-02
218GO:0009646: response to absence of light4.85E-02
219GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway4.87E-02
RankGO TermAdjusted P value
1GO:0016855: racemase and epimerase activity, acting on amino acids and derivatives0.00E+00
2GO:0008756: o-succinylbenzoate-CoA ligase activity0.00E+00
3GO:0045435: lycopene epsilon cyclase activity0.00E+00
4GO:0004639: phosphoribosylaminoimidazolesuccinocarboxamide synthase activity0.00E+00
5GO:0030604: 1-deoxy-D-xylulose-5-phosphate reductoisomerase activity0.00E+00
6GO:0036033: mediator complex binding0.00E+00
7GO:0004740: pyruvate dehydrogenase (acetyl-transferring) kinase activity0.00E+00
8GO:0004076: biotin synthase activity0.00E+00
9GO:0004059: aralkylamine N-acetyltransferase activity0.00E+00
10GO:0061634: alpha-D-xyloside xylohydrolase0.00E+00
11GO:0043864: indoleacetamide hydrolase activity0.00E+00
12GO:0036361: racemase activity, acting on amino acids and derivatives0.00E+00
13GO:0010349: L-galactose dehydrogenase activity0.00E+00
14GO:0050613: delta14-sterol reductase activity0.00E+00
15GO:0080176: xyloglucan 1,6-alpha-xylosidase activity0.00E+00
16GO:0003913: DNA photolyase activity3.92E-05
17GO:0004040: amidase activity2.22E-04
18GO:0008017: microtubule binding2.74E-04
19GO:0000293: ferric-chelate reductase activity3.14E-04
20GO:0004366: glycerol-3-phosphate O-acyltransferase activity3.14E-04
21GO:0004853: uroporphyrinogen decarboxylase activity5.15E-04
22GO:0042586: peptide deformylase activity5.15E-04
23GO:0004328: formamidase activity5.15E-04
24GO:0031957: very long-chain fatty acid-CoA ligase activity5.15E-04
25GO:0010347: L-galactose-1-phosphate phosphatase activity5.15E-04
26GO:0010945: CoA pyrophosphatase activity5.15E-04
27GO:0005227: calcium activated cation channel activity5.15E-04
28GO:0009496: plastoquinol--plastocyanin reductase activity5.15E-04
29GO:0050567: glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity5.15E-04
30GO:0080132: fatty acid alpha-hydroxylase activity5.15E-04
31GO:0003993: acid phosphatase activity5.82E-04
32GO:0016788: hydrolase activity, acting on ester bonds6.45E-04
33GO:0005525: GTP binding6.97E-04
34GO:0008934: inositol monophosphate 1-phosphatase activity1.11E-03
35GO:0052833: inositol monophosphate 4-phosphatase activity1.11E-03
36GO:0008728: GTP diphosphokinase activity1.11E-03
37GO:0015929: hexosaminidase activity1.11E-03
38GO:0004563: beta-N-acetylhexosaminidase activity1.11E-03
39GO:0015172: acidic amino acid transmembrane transporter activity1.11E-03
40GO:0004512: inositol-3-phosphate synthase activity1.11E-03
41GO:0047100: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (phosphorylating) activity1.11E-03
42GO:0017118: lipoyltransferase activity1.11E-03
43GO:0048531: beta-1,3-galactosyltransferase activity1.11E-03
44GO:0050362: L-tryptophan:2-oxoglutarate aminotransferase activity1.11E-03
45GO:0004766: spermidine synthase activity1.11E-03
46GO:0052832: inositol monophosphate 3-phosphatase activity1.11E-03
47GO:0015173: aromatic amino acid transmembrane transporter activity1.11E-03
48GO:0080097: L-tryptophan:pyruvate aminotransferase activity1.11E-03
49GO:0016630: protochlorophyllide reductase activity1.11E-03
50GO:0004829: threonine-tRNA ligase activity1.11E-03
51GO:0008839: 4-hydroxy-tetrahydrodipicolinate reductase1.11E-03
52GO:0003777: microtubule motor activity1.47E-03
53GO:0004148: dihydrolipoyl dehydrogenase activity1.81E-03
54GO:0070402: NADPH binding1.81E-03
55GO:0004049: anthranilate synthase activity1.81E-03
56GO:0080054: low-affinity nitrate transmembrane transporter activity1.81E-03
57GO:0015462: ATPase-coupled protein transmembrane transporter activity1.81E-03
58GO:0005504: fatty acid binding1.81E-03
59GO:0003955: NAD(P)H dehydrogenase (quinone) activity1.81E-03
60GO:0050734: hydroxycinnamoyltransferase activity1.81E-03
61GO:0008236: serine-type peptidase activity2.26E-03
62GO:0042973: glucan endo-1,3-beta-D-glucosidase activity2.27E-03
63GO:0016811: hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides2.63E-03
64GO:0052656: L-isoleucine transaminase activity2.63E-03
65GO:0009882: blue light photoreceptor activity2.63E-03
66GO:0052654: L-leucine transaminase activity2.63E-03
67GO:0016628: oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor2.63E-03
68GO:0016851: magnesium chelatase activity2.63E-03
69GO:0035198: miRNA binding2.63E-03
70GO:0052655: L-valine transaminase activity2.63E-03
71GO:0003999: adenine phosphoribosyltransferase activity2.63E-03
72GO:0015175: neutral amino acid transmembrane transporter activity2.63E-03
73GO:0008893: guanosine-3',5'-bis(diphosphate) 3'-diphosphatase activity2.63E-03
74GO:0048027: mRNA 5'-UTR binding2.63E-03
75GO:0005528: FK506 binding3.16E-03
76GO:0004084: branched-chain-amino-acid transaminase activity3.54E-03
77GO:0003841: 1-acylglycerol-3-phosphate O-acyltransferase activity3.54E-03
78GO:0046556: alpha-L-arabinofuranosidase activity3.54E-03
79GO:0001053: plastid sigma factor activity3.54E-03
80GO:0016810: hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds3.54E-03
81GO:0045430: chalcone isomerase activity3.54E-03
82GO:0009044: xylan 1,4-beta-xylosidase activity3.54E-03
83GO:0016987: sigma factor activity3.54E-03
84GO:0052689: carboxylic ester hydrolase activity4.36E-03
85GO:0016846: carbon-sulfur lyase activity4.54E-03
86GO:0005275: amine transmembrane transporter activity4.54E-03
87GO:0030570: pectate lyase activity4.58E-03
88GO:0003755: peptidyl-prolyl cis-trans isomerase activity5.49E-03
89GO:0042578: phosphoric ester hydrolase activity5.63E-03
90GO:0090447: glycerol-3-phosphate 2-O-acyltransferase activity5.63E-03
91GO:1990714: hydroxyproline O-galactosyltransferase activity5.63E-03
92GO:0000210: NAD+ diphosphatase activity5.63E-03
93GO:0016208: AMP binding5.63E-03
94GO:0016709: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen5.74E-03
95GO:0008080: N-acetyltransferase activity6.31E-03
96GO:0016491: oxidoreductase activity6.51E-03
97GO:0016832: aldehyde-lyase activity6.79E-03
98GO:0102391: decanoate--CoA ligase activity6.79E-03
99GO:0004723: calcium-dependent protein serine/threonine phosphatase activity6.79E-03
100GO:0005261: cation channel activity6.79E-03
101GO:0009927: histidine phosphotransfer kinase activity6.79E-03
102GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity6.79E-03
103GO:0003730: mRNA 3'-UTR binding6.79E-03
104GO:0042802: identical protein binding7.22E-03
105GO:0003924: GTPase activity7.24E-03
106GO:0004467: long-chain fatty acid-CoA ligase activity8.04E-03
107GO:0009881: photoreceptor activity8.04E-03
108GO:0043022: ribosome binding9.36E-03
109GO:0004033: aldo-keto reductase (NADP) activity9.36E-03
110GO:0005200: structural constituent of cytoskeleton1.01E-02
111GO:0008173: RNA methyltransferase activity1.08E-02
112GO:0016746: transferase activity, transferring acyl groups1.08E-02
113GO:0003747: translation release factor activity1.22E-02
114GO:0016844: strictosidine synthase activity1.38E-02
115GO:0047372: acylglycerol lipase activity1.70E-02
116GO:0005089: Rho guanyl-nucleotide exchange factor activity1.70E-02
117GO:0016614: oxidoreductase activity, acting on CH-OH group of donors1.72E-02
118GO:0031072: heat shock protein binding2.05E-02
119GO:0000155: phosphorelay sensor kinase activity2.05E-02
120GO:0003725: double-stranded RNA binding2.05E-02
121GO:0000175: 3'-5'-exoribonuclease activity2.05E-02
122GO:0008081: phosphoric diester hydrolase activity2.05E-02
123GO:0003774: motor activity2.24E-02
124GO:0008146: sulfotransferase activity2.43E-02
125GO:0005506: iron ion binding2.43E-02
126GO:0004185: serine-type carboxypeptidase activity2.43E-02
127GO:0020037: heme binding2.45E-02
128GO:0003743: translation initiation factor activity2.53E-02
129GO:0051537: 2 iron, 2 sulfur cluster binding2.63E-02
130GO:0003714: transcription corepressor activity2.83E-02
131GO:0015079: potassium ion transmembrane transporter activity3.03E-02
132GO:0019706: protein-cysteine S-palmitoyltransferase activity3.24E-02
133GO:0008408: 3'-5' exonuclease activity3.24E-02
134GO:0004176: ATP-dependent peptidase activity3.24E-02
135GO:0005515: protein binding3.29E-02
136GO:0047262: polygalacturonate 4-alpha-galacturonosyltransferase activity3.46E-02
137GO:0019825: oxygen binding3.53E-02
138GO:0016747: transferase activity, transferring acyl groups other than amino-acyl groups4.00E-02
139GO:0050660: flavin adenine dinucleotide binding4.30E-02
140GO:0001085: RNA polymerase II transcription factor binding4.61E-02
141GO:0010181: FMN binding4.85E-02
142GO:0016853: isomerase activity4.85E-02
143GO:0003723: RNA binding4.93E-02
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Gene type



Gene DE type