Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT5G01015

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0031129: inductive cell-cell signaling0.00E+00
2GO:2001294: malonyl-CoA catabolic process0.00E+00
3GO:0043488: regulation of mRNA stability0.00E+00
4GO:0061157: mRNA destabilization0.00E+00
5GO:0090706: specification of plant organ position0.00E+00
6GO:0009157: deoxyribonucleoside monophosphate biosynthetic process0.00E+00
7GO:0007037: vacuolar phosphate transport0.00E+00
8GO:0031116: positive regulation of microtubule polymerization0.00E+00
9GO:0010068: protoderm histogenesis0.00E+00
10GO:0051322: anaphase1.11E-04
11GO:1902183: regulation of shoot apical meristem development1.71E-04
12GO:0010158: abaxial cell fate specification1.71E-04
13GO:0009648: photoperiodism3.27E-04
14GO:0071028: nuclear mRNA surveillance4.37E-04
15GO:0006659: phosphatidylserine biosynthetic process4.37E-04
16GO:0034080: CENP-A containing nucleosome assembly4.37E-04
17GO:0006177: GMP biosynthetic process4.37E-04
18GO:0005991: trehalose metabolic process4.37E-04
19GO:0010450: inflorescence meristem growth4.37E-04
20GO:0051171: regulation of nitrogen compound metabolic process4.37E-04
21GO:0051418: microtubule nucleation by microtubule organizing center4.37E-04
22GO:0010482: regulation of epidermal cell division4.37E-04
23GO:2000024: regulation of leaf development7.70E-04
24GO:0009733: response to auxin8.44E-04
25GO:0009585: red, far-red light phototransduction8.71E-04
26GO:1900865: chloroplast RNA modification9.07E-04
27GO:0007154: cell communication9.44E-04
28GO:0034755: iron ion transmembrane transport9.44E-04
29GO:1900033: negative regulation of trichome patterning9.44E-04
30GO:0042814: monopolar cell growth9.44E-04
31GO:0031125: rRNA 3'-end processing9.44E-04
32GO:0015804: neutral amino acid transport9.44E-04
33GO:0071051: polyadenylation-dependent snoRNA 3'-end processing9.44E-04
34GO:0034475: U4 snRNA 3'-end processing9.44E-04
35GO:0033566: gamma-tubulin complex localization9.44E-04
36GO:1905011: transmembrane phosphate ion transport from cytosol to vacuole9.44E-04
37GO:0010115: regulation of abscisic acid biosynthetic process9.44E-04
38GO:1900871: chloroplast mRNA modification9.44E-04
39GO:2000039: regulation of trichome morphogenesis9.44E-04
40GO:0007166: cell surface receptor signaling pathway9.48E-04
41GO:0045604: regulation of epidermal cell differentiation1.54E-03
42GO:0006753: nucleoside phosphate metabolic process1.54E-03
43GO:0009150: purine ribonucleotide metabolic process1.54E-03
44GO:0001578: microtubule bundle formation1.54E-03
45GO:0045493: xylan catabolic process1.54E-03
46GO:0045165: cell fate commitment1.54E-03
47GO:0007052: mitotic spindle organization1.54E-03
48GO:0016075: rRNA catabolic process1.54E-03
49GO:0034427: nuclear-transcribed mRNA catabolic process, exonucleolytic, 3'-5'1.54E-03
50GO:0051127: positive regulation of actin nucleation1.54E-03
51GO:0043693: monoterpene biosynthetic process1.54E-03
52GO:0009963: positive regulation of flavonoid biosynthetic process2.22E-03
53GO:0006168: adenine salvage2.22E-03
54GO:0051415: interphase microtubule nucleation by interphase microtubule organizing center2.22E-03
55GO:0034508: centromere complex assembly2.22E-03
56GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly2.22E-03
57GO:0009067: aspartate family amino acid biosynthetic process2.22E-03
58GO:0006166: purine ribonucleoside salvage2.22E-03
59GO:0051639: actin filament network formation2.22E-03
60GO:0009647: skotomorphogenesis2.22E-03
61GO:0009226: nucleotide-sugar biosynthetic process2.22E-03
62GO:0090307: mitotic spindle assembly2.22E-03
63GO:0048645: animal organ formation2.22E-03
64GO:0010255: glucose mediated signaling pathway2.22E-03
65GO:0048530: fruit morphogenesis2.22E-03
66GO:0006164: purine nucleotide biosynthetic process2.22E-03
67GO:0042753: positive regulation of circadian rhythm2.23E-03
68GO:0005992: trehalose biosynthetic process2.47E-03
69GO:0009944: polarity specification of adaxial/abaxial axis2.47E-03
70GO:0032366: intracellular sterol transport2.99E-03
71GO:0009165: nucleotide biosynthetic process2.99E-03
72GO:0048629: trichome patterning2.99E-03
73GO:0051764: actin crosslink formation2.99E-03
74GO:0022622: root system development2.99E-03
75GO:0009649: entrainment of circadian clock2.99E-03
76GO:0006021: inositol biosynthetic process2.99E-03
77GO:0007020: microtubule nucleation2.99E-03
78GO:0040008: regulation of growth3.20E-03
79GO:0006544: glycine metabolic process3.83E-03
80GO:0046283: anthocyanin-containing compound metabolic process3.83E-03
81GO:0045038: protein import into chloroplast thylakoid membrane3.83E-03
82GO:0044209: AMP salvage3.83E-03
83GO:0046785: microtubule polymerization3.83E-03
84GO:0009789: positive regulation of abscisic acid-activated signaling pathway4.22E-03
85GO:0000226: microtubule cytoskeleton organization4.56E-03
86GO:0000741: karyogamy4.74E-03
87GO:0006561: proline biosynthetic process4.74E-03
88GO:0006563: L-serine metabolic process4.74E-03
89GO:0010264: myo-inositol hexakisphosphate biosynthetic process4.74E-03
90GO:0006139: nucleobase-containing compound metabolic process4.74E-03
91GO:0016554: cytidine to uridine editing4.74E-03
92GO:0010182: sugar mediated signaling pathway4.92E-03
93GO:0009958: positive gravitropism4.92E-03
94GO:0010154: fruit development4.92E-03
95GO:0007018: microtubule-based movement5.29E-03
96GO:0048280: vesicle fusion with Golgi apparatus5.72E-03
97GO:0009099: valine biosynthetic process5.72E-03
98GO:0030488: tRNA methylation5.72E-03
99GO:0009088: threonine biosynthetic process5.72E-03
100GO:0048444: floral organ morphogenesis5.72E-03
101GO:0080086: stamen filament development5.72E-03
102GO:0042372: phylloquinone biosynthetic process5.72E-03
103GO:0009082: branched-chain amino acid biosynthetic process5.72E-03
104GO:0048367: shoot system development6.21E-03
105GO:0010583: response to cyclopentenone6.50E-03
106GO:0009658: chloroplast organization6.68E-03
107GO:0032880: regulation of protein localization6.76E-03
108GO:0009395: phospholipid catabolic process6.76E-03
109GO:0048528: post-embryonic root development6.76E-03
110GO:0015937: coenzyme A biosynthetic process6.76E-03
111GO:0042255: ribosome assembly7.86E-03
112GO:0046620: regulation of organ growth7.86E-03
113GO:0006353: DNA-templated transcription, termination7.86E-03
114GO:0010078: maintenance of root meristem identity7.86E-03
115GO:0070413: trehalose metabolism in response to stress7.86E-03
116GO:0009704: de-etiolation7.86E-03
117GO:0052543: callose deposition in cell wall7.86E-03
118GO:0007155: cell adhesion7.86E-03
119GO:0033386: geranylgeranyl diphosphate biosynthetic process7.86E-03
120GO:0000910: cytokinesis8.32E-03
121GO:0009097: isoleucine biosynthetic process9.03E-03
122GO:0006997: nucleus organization9.03E-03
123GO:0043562: cellular response to nitrogen levels9.03E-03
124GO:0010093: specification of floral organ identity9.03E-03
125GO:0009627: systemic acquired resistance9.86E-03
126GO:0000373: Group II intron splicing1.03E-02
127GO:0006189: 'de novo' IMP biosynthetic process1.03E-02
128GO:0045337: farnesyl diphosphate biosynthetic process1.03E-02
129GO:0033384: geranyl diphosphate biosynthetic process1.03E-02
130GO:0048573: photoperiodism, flowering1.04E-02
131GO:0071577: zinc II ion transmembrane transport1.15E-02
132GO:0009638: phototropism1.15E-02
133GO:0000387: spliceosomal snRNP assembly1.15E-02
134GO:0009098: leucine biosynthetic process1.15E-02
135GO:0010018: far-red light signaling pathway1.15E-02
136GO:0010380: regulation of chlorophyll biosynthetic process1.15E-02
137GO:0009832: plant-type cell wall biogenesis1.21E-02
138GO:0009688: abscisic acid biosynthetic process1.29E-02
139GO:0009641: shade avoidance1.29E-02
140GO:0009299: mRNA transcription1.29E-02
141GO:0006896: Golgi to vacuole transport1.29E-02
142GO:0006535: cysteine biosynthetic process from serine1.29E-02
143GO:0048527: lateral root development1.34E-02
144GO:1903507: negative regulation of nucleic acid-templated transcription1.43E-02
145GO:0006415: translational termination1.43E-02
146GO:0006879: cellular iron ion homeostasis1.43E-02
147GO:0009750: response to fructose1.43E-02
148GO:0009684: indoleacetic acid biosynthetic process1.43E-02
149GO:0009089: lysine biosynthetic process via diaminopimelate1.43E-02
150GO:0009773: photosynthetic electron transport in photosystem I1.43E-02
151GO:0007623: circadian rhythm1.52E-02
152GO:0006790: sulfur compound metabolic process1.57E-02
153GO:0016024: CDP-diacylglycerol biosynthetic process1.57E-02
154GO:0016042: lipid catabolic process1.60E-02
155GO:0010628: positive regulation of gene expression1.72E-02
156GO:0030036: actin cytoskeleton organization1.72E-02
157GO:0009725: response to hormone1.72E-02
158GO:0010588: cotyledon vascular tissue pattern formation1.72E-02
159GO:2000012: regulation of auxin polar transport1.72E-02
160GO:0006631: fatty acid metabolic process1.75E-02
161GO:0048467: gynoecium development1.87E-02
162GO:0010143: cutin biosynthetic process1.87E-02
163GO:0006541: glutamine metabolic process1.87E-02
164GO:0009933: meristem structural organization1.87E-02
165GO:0090351: seedling development2.03E-02
166GO:0010030: positive regulation of seed germination2.03E-02
167GO:0009833: plant-type primary cell wall biogenesis2.20E-02
168GO:0006833: water transport2.20E-02
169GO:0000162: tryptophan biosynthetic process2.20E-02
170GO:0007010: cytoskeleton organization2.36E-02
171GO:0051017: actin filament bundle assembly2.36E-02
172GO:0010187: negative regulation of seed germination2.36E-02
173GO:0019344: cysteine biosynthetic process2.36E-02
174GO:0030150: protein import into mitochondrial matrix2.36E-02
175GO:0008299: isoprenoid biosynthetic process2.54E-02
176GO:0043622: cortical microtubule organization2.54E-02
177GO:0003333: amino acid transmembrane transport2.71E-02
178GO:0048511: rhythmic process2.71E-02
179GO:0009734: auxin-activated signaling pathway2.78E-02
180GO:0035428: hexose transmembrane transport2.89E-02
181GO:0031348: negative regulation of defense response2.89E-02
182GO:2000022: regulation of jasmonic acid mediated signaling pathway2.89E-02
183GO:0010214: seed coat development3.27E-02
184GO:0010091: trichome branching3.27E-02
185GO:0009740: gibberellic acid mediated signaling pathway3.43E-02
186GO:0016117: carotenoid biosynthetic process3.46E-02
187GO:0008284: positive regulation of cell proliferation3.46E-02
188GO:0042147: retrograde transport, endosome to Golgi3.46E-02
189GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway3.59E-02
190GO:0016310: phosphorylation3.61E-02
191GO:0042335: cuticle development3.66E-02
192GO:0000271: polysaccharide biosynthetic process3.66E-02
193GO:0080022: primary root development3.66E-02
194GO:0008033: tRNA processing3.66E-02
195GO:0034220: ion transmembrane transport3.66E-02
196GO:0010087: phloem or xylem histogenesis3.66E-02
197GO:0042631: cellular response to water deprivation3.66E-02
198GO:0006396: RNA processing3.74E-02
199GO:0010197: polar nucleus fusion3.86E-02
200GO:0046323: glucose import3.86E-02
201GO:0008360: regulation of cell shape3.86E-02
202GO:0045489: pectin biosynthetic process3.86E-02
203GO:0008654: phospholipid biosynthetic process4.27E-02
204GO:0009851: auxin biosynthetic process4.27E-02
205GO:0006623: protein targeting to vacuole4.27E-02
206GO:0009791: post-embryonic development4.27E-02
207GO:0048825: cotyledon development4.27E-02
208GO:0006891: intra-Golgi vesicle-mediated transport4.48E-02
209GO:0048510: regulation of timing of transition from vegetative to reproductive phase4.48E-02
210GO:0000302: response to reactive oxygen species4.48E-02
211GO:0032502: developmental process4.69E-02
212GO:0016032: viral process4.69E-02
213GO:0006468: protein phosphorylation4.93E-02
RankGO TermAdjusted P value
1GO:0080176: xyloglucan 1,6-alpha-xylosidase activity0.00E+00
2GO:0004639: phosphoribosylaminoimidazolesuccinocarboxamide synthase activity0.00E+00
3GO:0008756: o-succinylbenzoate-CoA ligase activity0.00E+00
4GO:1990534: thermospermine oxidase activity0.00E+00
5GO:0019136: deoxynucleoside kinase activity0.00E+00
6GO:0061634: alpha-D-xyloside xylohydrolase0.00E+00
7GO:0010301: xanthoxin dehydrogenase activity0.00E+00
8GO:0004675: transmembrane receptor protein serine/threonine kinase activity1.20E-04
9GO:0008017: microtubule binding1.57E-04
10GO:0016788: hydrolase activity, acting on ester bonds3.89E-04
11GO:0050139: nicotinate-N-glucosyltransferase activity4.37E-04
12GO:0010945: CoA pyrophosphatase activity4.37E-04
13GO:0004512: inositol-3-phosphate synthase activity9.44E-04
14GO:0015172: acidic amino acid transmembrane transporter activity9.44E-04
15GO:0050017: L-3-cyanoalanine synthase activity9.44E-04
16GO:0017118: lipoyltransferase activity9.44E-04
17GO:0043425: bHLH transcription factor binding9.44E-04
18GO:0050362: L-tryptophan:2-oxoglutarate aminotransferase activity9.44E-04
19GO:0003938: IMP dehydrogenase activity9.44E-04
20GO:0080097: L-tryptophan:pyruvate aminotransferase activity9.44E-04
21GO:0004049: anthranilate synthase activity1.54E-03
22GO:0017172: cysteine dioxygenase activity2.22E-03
23GO:0052656: L-isoleucine transaminase activity2.22E-03
24GO:0047627: adenylylsulfatase activity2.22E-03
25GO:0052654: L-leucine transaminase activity2.22E-03
26GO:0052655: L-valine transaminase activity2.22E-03
27GO:0001872: (1->3)-beta-D-glucan binding2.22E-03
28GO:0003825: alpha,alpha-trehalose-phosphate synthase (UDP-forming) activity2.22E-03
29GO:0004072: aspartate kinase activity2.22E-03
30GO:0015175: neutral amino acid transmembrane transporter activity2.22E-03
31GO:0003999: adenine phosphoribosyltransferase activity2.22E-03
32GO:0008893: guanosine-3',5'-bis(diphosphate) 3'-diphosphatase activity2.22E-03
33GO:0046556: alpha-L-arabinofuranosidase activity2.99E-03
34GO:0080032: methyl jasmonate esterase activity2.99E-03
35GO:0043015: gamma-tubulin binding2.99E-03
36GO:0009044: xylan 1,4-beta-xylosidase activity2.99E-03
37GO:0004084: branched-chain-amino-acid transaminase activity2.99E-03
38GO:0030570: pectate lyase activity3.58E-03
39GO:0004372: glycine hydroxymethyltransferase activity3.83E-03
40GO:0016846: carbon-sulfur lyase activity3.83E-03
41GO:0016773: phosphotransferase activity, alcohol group as acceptor3.83E-03
42GO:0003727: single-stranded RNA binding3.89E-03
43GO:0004366: glycerol-3-phosphate O-acyltransferase activity4.74E-03
44GO:0042578: phosphoric ester hydrolase activity4.74E-03
45GO:0090447: glycerol-3-phosphate 2-O-acyltransferase activity4.74E-03
46GO:0000210: NAD+ diphosphatase activity4.74E-03
47GO:0016208: AMP binding4.74E-03
48GO:0001085: RNA polymerase II transcription factor binding4.92E-03
49GO:0042802: identical protein binding4.95E-03
50GO:0003777: microtubule motor activity5.48E-03
51GO:0003730: mRNA 3'-UTR binding5.72E-03
52GO:0004723: calcium-dependent protein serine/threonine phosphatase activity5.72E-03
53GO:0004124: cysteine synthase activity5.72E-03
54GO:0019899: enzyme binding6.76E-03
55GO:0016791: phosphatase activity7.38E-03
56GO:0004311: farnesyltranstransferase activity7.86E-03
57GO:0008173: RNA methyltransferase activity9.03E-03
58GO:0003747: translation release factor activity1.03E-02
59GO:0004337: geranyltranstransferase activity1.03E-02
60GO:0030247: polysaccharide binding1.04E-02
61GO:0052689: carboxylic ester hydrolase activity1.08E-02
62GO:0016829: lyase activity1.11E-02
63GO:0005381: iron ion transmembrane transporter activity1.15E-02
64GO:0004805: trehalose-phosphatase activity1.29E-02
65GO:0001228: transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding1.34E-02
66GO:0008327: methyl-CpG binding1.43E-02
67GO:0047372: acylglycerol lipase activity1.43E-02
68GO:0004161: dimethylallyltranstransferase activity1.43E-02
69GO:0004022: alcohol dehydrogenase (NAD) activity1.72E-02
70GO:0031072: heat shock protein binding1.72E-02
71GO:0000175: 3'-5'-exoribonuclease activity1.72E-02
72GO:0008081: phosphoric diester hydrolase activity1.72E-02
73GO:0015266: protein channel activity1.72E-02
74GO:0008131: primary amine oxidase activity1.87E-02
75GO:0042973: glucan endo-1,3-beta-D-glucosidase activity1.87E-02
76GO:0008083: growth factor activity1.87E-02
77GO:0003714: transcription corepressor activity2.36E-02
78GO:0005385: zinc ion transmembrane transporter activity2.36E-02
79GO:0005528: FK506 binding2.36E-02
80GO:0008324: cation transmembrane transporter activity2.54E-02
81GO:0008408: 3'-5' exonuclease activity2.71E-02
82GO:0004176: ATP-dependent peptidase activity2.71E-02
83GO:0047262: polygalacturonate 4-alpha-galacturonosyltransferase activity2.89E-02
84GO:0016760: cellulose synthase (UDP-forming) activity3.08E-02
85GO:0016874: ligase activity3.43E-02
86GO:0008270: zinc ion binding3.75E-02
87GO:0005355: glucose transmembrane transporter activity4.06E-02
88GO:0044212: transcription regulatory region DNA binding4.18E-02
89GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen4.66E-02
90GO:0003824: catalytic activity4.86E-02
91GO:0051015: actin filament binding4.91E-02
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Gene type



Gene DE type