co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT4G39960

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:2000042: negative regulation of double-strand break repair via homologous recombination	0.00E+00
2	GO:0005996: monosaccharide metabolic process	0.00E+00
3	GO:0015717: triose phosphate transport	0.00E+00
4	GO:1905157: positive regulation of photosynthesis	0.00E+00
5	GO:1901918: negative regulation of exoribonuclease activity	0.00E+00
6	GO:0055114: oxidation-reduction process	3.43E-06
7	GO:0015979: photosynthesis	2.86E-05
8	GO:0009643: photosynthetic acclimation	5.10E-05
9	GO:0009772: photosynthetic electron transport in photosystem II	9.52E-05
10	GO:0009704: de-etiolation	1.23E-04
11	GO:0000476: maturation of 4.5S rRNA	1.64E-04
12	GO:0051180: vitamin transport	1.64E-04
13	GO:0000967: rRNA 5'-end processing	1.64E-04
14	GO:0009090: homoserine biosynthetic process	1.64E-04
15	GO:0030974: thiamine pyrophosphate transport	1.64E-04
16	GO:0043953: protein transport by the Tat complex	1.64E-04
17	GO:0046467: membrane lipid biosynthetic process	1.64E-04
18	GO:0071277: cellular response to calcium ion	1.64E-04
19	GO:1904966: positive regulation of vitamin E biosynthetic process	1.64E-04
20	GO:0000481: maturation of 5S rRNA	1.64E-04
21	GO:1904964: positive regulation of phytol biosynthetic process	1.64E-04
22	GO:0042371: vitamin K biosynthetic process	1.64E-04
23	GO:0065002: intracellular protein transmembrane transport	1.64E-04
24	GO:0046167: glycerol-3-phosphate biosynthetic process	1.64E-04
25	GO:0043007: maintenance of rDNA	1.64E-04
26	GO:0034337: RNA folding	1.64E-04
27	GO:0019510: S-adenosylhomocysteine catabolic process	1.64E-04
28	GO:0044550: secondary metabolite biosynthetic process	2.11E-04
29	GO:0015995: chlorophyll biosynthetic process	2.55E-04
30	GO:0009773: photosynthetic electron transport in photosystem I	3.08E-04
31	GO:1902326: positive regulation of chlorophyll biosynthetic process	3.73E-04
32	GO:0033353: S-adenosylmethionine cycle	3.73E-04
33	GO:0015893: drug transport	3.73E-04
34	GO:0006650: glycerophospholipid metabolic process	3.73E-04
35	GO:0010541: acropetal auxin transport	3.73E-04
36	GO:0015790: UDP-xylose transport	3.73E-04
37	GO:0030388: fructose 1,6-bisphosphate metabolic process	3.73E-04
38	GO:0034470: ncRNA processing	3.73E-04
39	GO:0006094: gluconeogenesis	4.03E-04
40	GO:0019253: reductive pentose-phosphate cycle	4.55E-04
41	GO:0006636: unsaturated fatty acid biosynthetic process	5.67E-04
42	GO:0006000: fructose metabolic process	6.11E-04
43	GO:0046168: glycerol-3-phosphate catabolic process	6.11E-04
44	GO:0010160: formation of animal organ boundary	6.11E-04
45	GO:0035436: triose phosphate transmembrane transport	6.11E-04
46	GO:0009658: chloroplast organization	7.69E-04
47	GO:0043481: anthocyanin accumulation in tissues in response to UV light	8.73E-04
48	GO:0006072: glycerol-3-phosphate metabolic process	8.73E-04
49	GO:0009067: aspartate family amino acid biosynthetic process	8.73E-04
50	GO:0006020: inositol metabolic process	8.73E-04
51	GO:0071484: cellular response to light intensity	8.73E-04
52	GO:0009152: purine ribonucleotide biosynthetic process	8.73E-04
53	GO:0046653: tetrahydrofolate metabolic process	8.73E-04
54	GO:0010600: regulation of auxin biosynthetic process	1.16E-03
55	GO:0006546: glycine catabolic process	1.16E-03
56	GO:0015713: phosphoglycerate transport	1.16E-03
57	GO:0006021: inositol biosynthetic process	1.16E-03
58	GO:0015689: molybdate ion transport	1.16E-03
59	GO:0009765: photosynthesis, light harvesting	1.16E-03
60	GO:0045727: positive regulation of translation	1.16E-03
61	GO:0006564: L-serine biosynthetic process	1.47E-03
62	GO:0032259: methylation	1.79E-03
63	GO:0060918: auxin transport	1.80E-03
64	GO:1902456: regulation of stomatal opening	1.80E-03
65	GO:0046855: inositol phosphate dephosphorylation	1.80E-03
66	GO:0010244: response to low fluence blue light stimulus by blue low-fluence system	2.17E-03
67	GO:0017148: negative regulation of translation	2.17E-03
68	GO:0009088: threonine biosynthetic process	2.17E-03
69	GO:0010019: chloroplast-nucleus signaling pathway	2.17E-03
70	GO:1900057: positive regulation of leaf senescence	2.55E-03
71	GO:0006400: tRNA modification	2.55E-03
72	GO:0010161: red light signaling pathway	2.55E-03
73	GO:1900056: negative regulation of leaf senescence	2.55E-03
74	GO:0010928: regulation of auxin mediated signaling pathway	2.95E-03
75	GO:0008610: lipid biosynthetic process	2.95E-03
76	GO:0032508: DNA duplex unwinding	2.95E-03
77	GO:0000105: histidine biosynthetic process	2.95E-03
78	GO:0009231: riboflavin biosynthetic process	2.95E-03
79	GO:0009657: plastid organization	3.37E-03
80	GO:0032544: plastid translation	3.37E-03
81	GO:2000031: regulation of salicylic acid mediated signaling pathway	3.37E-03
82	GO:0009932: cell tip growth	3.37E-03
83	GO:0006002: fructose 6-phosphate metabolic process	3.37E-03
84	GO:0034599: cellular response to oxidative stress	3.68E-03
85	GO:0006098: pentose-phosphate shunt	3.81E-03
86	GO:0009821: alkaloid biosynthetic process	3.81E-03
87	GO:0010206: photosystem II repair	3.81E-03
88	GO:0090333: regulation of stomatal closure	3.81E-03
89	GO:0006754: ATP biosynthetic process	3.81E-03
90	GO:0010267: production of ta-siRNAs involved in RNA interference	4.27E-03
91	GO:0009086: methionine biosynthetic process	4.27E-03
92	GO:0010380: regulation of chlorophyll biosynthetic process	4.27E-03
93	GO:0010205: photoinhibition	4.27E-03
94	GO:0009744: response to sucrose	4.53E-03
95	GO:0006535: cysteine biosynthetic process from serine	4.75E-03
96	GO:0019684: photosynthesis, light reaction	5.25E-03
97	GO:0009089: lysine biosynthetic process via diaminopimelate	5.25E-03
98	GO:0043085: positive regulation of catalytic activity	5.25E-03
99	GO:0000272: polysaccharide catabolic process	5.25E-03
100	GO:0018119: peptidyl-cysteine S-nitrosylation	5.25E-03
101	GO:0002213: defense response to insect	5.77E-03
102	GO:0016925: protein sumoylation	5.77E-03
103	GO:0008361: regulation of cell size	5.77E-03
104	GO:0006790: sulfur compound metabolic process	5.77E-03
105	GO:0009409: response to cold	6.08E-03
106	GO:0009585: red, far-red light phototransduction	6.10E-03
107	GO:0006006: glucose metabolic process	6.30E-03
108	GO:0018107: peptidyl-threonine phosphorylation	6.30E-03
109	GO:0009725: response to hormone	6.30E-03
110	GO:0005986: sucrose biosynthetic process	6.30E-03
111	GO:0010207: photosystem II assembly	6.85E-03
112	GO:0010540: basipetal auxin transport	6.85E-03
113	GO:0006096: glycolytic process	7.21E-03
114	GO:0005985: sucrose metabolic process	7.41E-03
115	GO:0046854: phosphatidylinositol phosphorylation	7.41E-03
116	GO:0042343: indole glucosinolate metabolic process	7.41E-03
117	GO:0009833: plant-type primary cell wall biogenesis	8.00E-03
118	GO:0019762: glucosinolate catabolic process	8.00E-03
119	GO:0006406: mRNA export from nucleus	8.59E-03
120	GO:0019344: cysteine biosynthetic process	8.59E-03
121	GO:0006396: RNA processing	8.94E-03
122	GO:0009695: jasmonic acid biosynthetic process	9.21E-03
123	GO:0031408: oxylipin biosynthetic process	9.84E-03
124	GO:0098542: defense response to other organism	9.84E-03
125	GO:0061077: chaperone-mediated protein folding	9.84E-03
126	GO:2000022: regulation of jasmonic acid mediated signaling pathway	1.05E-02
127	GO:0006730: one-carbon metabolic process	1.05E-02
128	GO:0010017: red or far-red light signaling pathway	1.05E-02
129	GO:0009058: biosynthetic process	1.15E-02
130	GO:0048443: stamen development	1.18E-02
131	GO:0006817: phosphate ion transport	1.18E-02
132	GO:0009306: protein secretion	1.18E-02
133	GO:0042631: cellular response to water deprivation	1.32E-02
134	GO:0042742: defense response to bacterium	1.33E-02
135	GO:0009958: positive gravitropism	1.39E-02
136	GO:0006662: glycerol ether metabolic process	1.39E-02
137	GO:0015986: ATP synthesis coupled proton transport	1.47E-02
138	GO:0007059: chromosome segregation	1.47E-02
139	GO:0007623: circadian rhythm	1.51E-02
140	GO:0008654: phospholipid biosynthetic process	1.54E-02
141	GO:0031047: gene silencing by RNA	1.70E-02
142	GO:0007264: small GTPase mediated signal transduction	1.70E-02
143	GO:0009735: response to cytokinin	1.72E-02
144	GO:0009639: response to red or far red light	1.86E-02
145	GO:0009567: double fertilization forming a zygote and endosperm	1.86E-02
146	GO:0051607: defense response to virus	2.02E-02
147	GO:0010027: thylakoid membrane organization	2.10E-02
148	GO:0009788: negative regulation of abscisic acid-activated signaling pathway	2.19E-02
149	GO:0010411: xyloglucan metabolic process	2.36E-02
150	GO:0005975: carbohydrate metabolic process	2.48E-02
151	GO:0030244: cellulose biosynthetic process	2.54E-02
152	GO:0018298: protein-chromophore linkage	2.54E-02
153	GO:0055085: transmembrane transport	2.60E-02
154	GO:0006499: N-terminal protein myristoylation	2.72E-02
155	GO:0010218: response to far red light	2.72E-02
156	GO:0048527: lateral root development	2.82E-02
157	GO:0009910: negative regulation of flower development	2.82E-02
158	GO:0009637: response to blue light	3.01E-02
159	GO:0009853: photorespiration	3.01E-02
160	GO:0006839: mitochondrial transport	3.30E-02
161	GO:0006631: fatty acid metabolic process	3.40E-02
162	GO:0009640: photomorphogenesis	3.60E-02
163	GO:0010114: response to red light	3.60E-02
164	GO:0009926: auxin polar transport	3.60E-02
165	GO:0042546: cell wall biogenesis	3.70E-02
166	GO:0008643: carbohydrate transport	3.81E-02
167	GO:0006397: mRNA processing	4.44E-02
168	GO:0006364: rRNA processing	4.45E-02
169	GO:0006813: potassium ion transport	4.45E-02
170	GO:0071555: cell wall organization	4.62E-02
171	GO:0006857: oligopeptide transport	4.67E-02
172	GO:0006417: regulation of translation	4.78E-02

Rank	GO Term	Adjusted P value
1	GO:0009979: 16:0 monogalactosyldiacylglycerol desaturase activity	0.00E+00
2	GO:0008935: 1,4-dihydroxy-2-naphthoyl-CoA synthase activity	0.00E+00
3	GO:0004768: stearoyl-CoA 9-desaturase activity	0.00E+00
4	GO:0102193: protein-ribulosamine 3-kinase activity	0.00E+00
5	GO:0035798: 2-alkenal reductase (NADP+) activity	0.00E+00
6	GO:0030794: (S)-coclaurine-N-methyltransferase activity	0.00E+00
7	GO:0009673: low-affinity phosphate transmembrane transporter activity	0.00E+00
8	GO:0018708: thiol S-methyltransferase activity	1.32E-06
9	GO:0051287: NAD binding	6.97E-05
10	GO:0019899: enzyme binding	9.52E-05
11	GO:0010313: phytochrome binding	1.64E-04
12	GO:0003879: ATP phosphoribosyltransferase activity	1.64E-04
13	GO:0035671: enone reductase activity	1.64E-04
14	GO:0008886: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (non-phosphorylating) activity	1.64E-04
15	GO:0046906: tetrapyrrole binding	1.64E-04
16	GO:0090422: thiamine pyrophosphate transporter activity	1.64E-04
17	GO:0004013: adenosylhomocysteinase activity	1.64E-04
18	GO:0008934: inositol monophosphate 1-phosphatase activity	3.73E-04
19	GO:0052833: inositol monophosphate 4-phosphatase activity	3.73E-04
20	GO:0005464: UDP-xylose transmembrane transporter activity	3.73E-04
21	GO:0004412: homoserine dehydrogenase activity	3.73E-04
22	GO:0047100: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (phosphorylating) activity	3.73E-04
23	GO:0050017: L-3-cyanoalanine synthase activity	3.73E-04
24	GO:0010297: heteropolysaccharide binding	3.73E-04
25	GO:0009977: proton motive force dependent protein transmembrane transporter activity	3.73E-04
26	GO:0004617: phosphoglycerate dehydrogenase activity	3.73E-04
27	GO:0008686: 3,4-dihydroxy-2-butanone-4-phosphate synthase activity	3.73E-04
28	GO:0004047: aminomethyltransferase activity	3.73E-04
29	GO:0052832: inositol monophosphate 3-phosphatase activity	3.73E-04
30	GO:0042132: fructose 1,6-bisphosphate 1-phosphatase activity	3.73E-04
31	GO:0004565: beta-galactosidase activity	4.03E-04
32	GO:0003935: GTP cyclohydrolase II activity	6.11E-04
33	GO:0016742: hydroxymethyl-, formyl- and related transferase activity	6.11E-04
34	GO:0004367: glycerol-3-phosphate dehydrogenase [NAD+] activity	6.11E-04
35	GO:0071917: triose-phosphate transmembrane transporter activity	6.11E-04
36	GO:0008864: formyltetrahydrofolate deformylase activity	6.11E-04
37	GO:0019948: SUMO activating enzyme activity	6.11E-04
38	GO:0010277: chlorophyllide a oxygenase [overall] activity	6.11E-04
39	GO:0008168: methyltransferase activity	7.27E-04
40	GO:0048027: mRNA 5'-UTR binding	8.73E-04
41	GO:0016851: magnesium chelatase activity	8.73E-04
42	GO:0022890: inorganic cation transmembrane transporter activity	8.73E-04
43	GO:0004365: glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity	8.73E-04
44	GO:0004072: aspartate kinase activity	8.73E-04
45	GO:0015098: molybdate ion transmembrane transporter activity	1.16E-03
46	GO:0043495: protein anchor	1.16E-03
47	GO:0015120: phosphoglycerate transmembrane transporter activity	1.16E-03
48	GO:0045300: acyl-[acyl-carrier-protein] desaturase activity	1.47E-03
49	GO:0016702: oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen	1.47E-03
50	GO:0016709: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen	1.56E-03
51	GO:0035673: oligopeptide transmembrane transporter activity	1.80E-03
52	GO:0004332: fructose-bisphosphate aldolase activity	1.80E-03
53	GO:0016597: amino acid binding	2.03E-03
54	GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity	2.17E-03
55	GO:0004124: cysteine synthase activity	2.17E-03
56	GO:0004525: ribonuclease III activity	2.95E-03
57	GO:0042802: identical protein binding	3.36E-03
58	GO:0016717: oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water	3.37E-03
59	GO:0005506: iron ion binding	3.48E-03
60	GO:0071949: FAD binding	3.81E-03
61	GO:0050661: NADP binding	4.01E-03
62	GO:0016844: strictosidine synthase activity	4.27E-03
63	GO:0004028: 3-chloroallyl aldehyde dehydrogenase activity	4.27E-03
64	GO:0030234: enzyme regulator activity	4.75E-03
65	GO:0015386: potassium:proton antiporter activity	5.25E-03
66	GO:0015198: oligopeptide transporter activity	5.77E-03
67	GO:0016491: oxidoreductase activity	5.80E-03
68	GO:0010329: auxin efflux transmembrane transporter activity	6.30E-03
69	GO:0005315: inorganic phosphate transmembrane transporter activity	6.30E-03
70	GO:0019825: oxygen binding	7.80E-03
71	GO:0005528: FK506 binding	8.59E-03
72	GO:0015079: potassium ion transmembrane transporter activity	9.21E-03
73	GO:0019843: rRNA binding	1.09E-02
74	GO:0016760: cellulose synthase (UDP-forming) activity	1.11E-02
75	GO:0022891: substrate-specific transmembrane transporter activity	1.11E-02
76	GO:0003727: single-stranded RNA binding	1.18E-02
77	GO:0047134: protein-disulfide reductase activity	1.25E-02
78	GO:0046933: proton-transporting ATP synthase activity, rotational mechanism	1.39E-02
79	GO:0015297: antiporter activity	1.44E-02
80	GO:0015299: solute:proton antiporter activity	1.47E-02
81	GO:0050662: coenzyme binding	1.47E-02
82	GO:0004791: thioredoxin-disulfide reductase activity	1.47E-02
83	GO:0004872: receptor activity	1.54E-02
84	GO:0016762: xyloglucan:xyloglucosyl transferase activity	1.62E-02
85	GO:0004518: nuclease activity	1.70E-02
86	GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor	1.77E-02
87	GO:0016759: cellulose synthase activity	1.86E-02
88	GO:0042626: ATPase activity, coupled to transmembrane movement of substances	1.92E-02
89	GO:0008483: transaminase activity	1.94E-02
90	GO:0016722: oxidoreductase activity, oxidizing metal ions	1.94E-02
91	GO:0004702: signal transducer, downstream of receptor, with serine/threonine kinase activity	1.94E-02
92	GO:0016168: chlorophyll binding	2.19E-02
93	GO:0016798: hydrolase activity, acting on glycosyl bonds	2.36E-02
94	GO:0008757: S-adenosylmethionine-dependent methyltransferase activity	2.45E-02
95	GO:0020037: heme binding	2.62E-02
96	GO:0005507: copper ion binding	3.00E-02
97	GO:0003746: translation elongation factor activity	3.01E-02
98	GO:0052689: carboxylic ester hydrolase activity	3.20E-02
99	GO:0005525: GTP binding	3.58E-02
100	GO:0051537: 2 iron, 2 sulfur cluster binding	3.81E-02
101	GO:0043621: protein self-association	3.81E-02
102	GO:0015293: symporter activity	3.91E-02
103	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	4.02E-02