Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT4G39710

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0070681: glutaminyl-tRNAGln biosynthesis via transamidation0.00E+00
2GO:0090470: shoot organ boundary specification0.00E+00
3GO:0090279: regulation of calcium ion import0.00E+00
4GO:0031116: positive regulation of microtubule polymerization0.00E+00
5GO:0046838: phosphorylated carbohydrate dephosphorylation0.00E+00
6GO:0006428: isoleucyl-tRNA aminoacylation0.00E+00
7GO:0042820: vitamin B6 catabolic process0.00E+00
8GO:0042821: pyridoxal biosynthetic process0.00E+00
9GO:0042407: cristae formation0.00E+00
10GO:0035970: peptidyl-threonine dephosphorylation0.00E+00
11GO:0009106: lipoate metabolic process0.00E+00
12GO:0090042: tubulin deacetylation0.00E+00
13GO:0071474: cellular hyperosmotic response0.00E+00
14GO:0006114: glycerol biosynthetic process0.00E+00
15GO:0018023: peptidyl-lysine trimethylation0.00E+00
16GO:0051484: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway involved in terpenoid biosynthetic process0.00E+00
17GO:1902458: positive regulation of stomatal opening0.00E+00
18GO:0070125: mitochondrial translational elongation0.00E+00
19GO:0006429: leucyl-tRNA aminoacylation0.00E+00
20GO:0009249: protein lipoylation0.00E+00
21GO:0019685: photosynthesis, dark reaction0.00E+00
22GO:0002184: cytoplasmic translational termination0.00E+00
23GO:0017038: protein import0.00E+00
24GO:0046460: neutral lipid biosynthetic process0.00E+00
25GO:0015995: chlorophyll biosynthetic process4.05E-07
26GO:0010207: photosystem II assembly8.86E-07
27GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly1.40E-06
28GO:0071482: cellular response to light stimulus2.32E-06
29GO:0010027: thylakoid membrane organization4.33E-06
30GO:0045038: protein import into chloroplast thylakoid membrane8.60E-06
31GO:1903426: regulation of reactive oxygen species biosynthetic process2.02E-05
32GO:0032544: plastid translation8.29E-05
33GO:2001141: regulation of RNA biosynthetic process1.37E-04
34GO:0006352: DNA-templated transcription, initiation2.25E-04
35GO:0032543: mitochondrial translation3.50E-04
36GO:0009658: chloroplast organization3.97E-04
37GO:0010190: cytochrome b6f complex assembly4.87E-04
38GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway4.87E-04
39GO:0030488: tRNA methylation6.45E-04
40GO:1902478: negative regulation of defense response to bacterium, incompatible interaction6.88E-04
41GO:0015671: oxygen transport6.88E-04
42GO:0000481: maturation of 5S rRNA6.88E-04
43GO:0042547: cell wall modification involved in multidimensional cell growth6.88E-04
44GO:0015801: aromatic amino acid transport6.88E-04
45GO:0043686: co-translational protein modification6.88E-04
46GO:0034337: RNA folding6.88E-04
47GO:0048363: mucilage pectin metabolic process6.88E-04
48GO:0000476: maturation of 4.5S rRNA6.88E-04
49GO:0009443: pyridoxal 5'-phosphate salvage6.88E-04
50GO:0000967: rRNA 5'-end processing6.88E-04
51GO:0009395: phospholipid catabolic process8.23E-04
52GO:0006605: protein targeting1.02E-03
53GO:2000070: regulation of response to water deprivation1.02E-03
54GO:0048564: photosystem I assembly1.02E-03
55GO:1900871: chloroplast mRNA modification1.48E-03
56GO:0006432: phenylalanyl-tRNA aminoacylation1.48E-03
57GO:0018026: peptidyl-lysine monomethylation1.48E-03
58GO:0000256: allantoin catabolic process1.48E-03
59GO:0071668: plant-type cell wall assembly1.48E-03
60GO:0034755: iron ion transmembrane transport1.48E-03
61GO:0006423: cysteinyl-tRNA aminoacylation1.48E-03
62GO:0006435: threonyl-tRNA aminoacylation1.48E-03
63GO:0080183: response to photooxidative stress1.48E-03
64GO:0051262: protein tetramerization1.48E-03
65GO:0034470: ncRNA processing1.48E-03
66GO:0010275: NAD(P)H dehydrogenase complex assembly1.48E-03
67GO:0010198: synergid death1.48E-03
68GO:0010206: photosystem II repair1.49E-03
69GO:0019432: triglyceride biosynthetic process1.49E-03
70GO:0006783: heme biosynthetic process1.49E-03
71GO:1900865: chloroplast RNA modification1.77E-03
72GO:0006779: porphyrin-containing compound biosynthetic process1.77E-03
73GO:0006782: protoporphyrinogen IX biosynthetic process2.07E-03
74GO:0055114: oxidation-reduction process2.13E-03
75GO:0006413: translational initiation2.23E-03
76GO:0006415: translational termination2.39E-03
77GO:0009089: lysine biosynthetic process via diaminopimelate2.39E-03
78GO:0010136: ureide catabolic process2.45E-03
79GO:0034051: negative regulation of plant-type hypersensitive response2.45E-03
80GO:0051604: protein maturation2.45E-03
81GO:0015940: pantothenate biosynthetic process2.45E-03
82GO:0001578: microtubule bundle formation2.45E-03
83GO:0045493: xylan catabolic process2.45E-03
84GO:0006617: SRP-dependent cotranslational protein targeting to membrane, signal sequence recognition2.45E-03
85GO:0005977: glycogen metabolic process2.45E-03
86GO:0033591: response to L-ascorbic acid2.45E-03
87GO:0005983: starch catabolic process2.74E-03
88GO:0016024: CDP-diacylglycerol biosynthetic process2.74E-03
89GO:0045037: protein import into chloroplast stroma2.74E-03
90GO:0015979: photosynthesis3.00E-03
91GO:0009627: systemic acquired resistance3.47E-03
92GO:0006424: glutamyl-tRNA aminoacylation3.56E-03
93GO:0043433: negative regulation of sequence-specific DNA binding transcription factor activity3.56E-03
94GO:0006145: purine nucleobase catabolic process3.56E-03
95GO:0010371: regulation of gibberellin biosynthetic process3.56E-03
96GO:0009102: biotin biosynthetic process3.56E-03
97GO:0046653: tetrahydrofolate metabolic process3.56E-03
98GO:0009052: pentose-phosphate shunt, non-oxidative branch3.56E-03
99GO:0033014: tetrapyrrole biosynthetic process3.56E-03
100GO:0090351: seedling development3.96E-03
101GO:0022622: root system development4.81E-03
102GO:0071483: cellular response to blue light4.81E-03
103GO:0007020: microtubule nucleation4.81E-03
104GO:0010021: amylopectin biosynthetic process4.81E-03
105GO:0010109: regulation of photosynthesis4.81E-03
106GO:0051322: anaphase4.81E-03
107GO:0009765: photosynthesis, light harvesting4.81E-03
108GO:0006418: tRNA aminoacylation for protein translation5.43E-03
109GO:0048511: rhythmic process5.98E-03
110GO:0046785: microtubule polymerization6.18E-03
111GO:0046907: intracellular transport6.18E-03
112GO:0016120: carotene biosynthetic process6.18E-03
113GO:0031365: N-terminal protein amino acid modification6.18E-03
114GO:0009107: lipoate biosynthetic process6.18E-03
115GO:0016123: xanthophyll biosynthetic process6.18E-03
116GO:0000304: response to singlet oxygen6.18E-03
117GO:0080110: sporopollenin biosynthetic process6.18E-03
118GO:0016554: cytidine to uridine editing7.68E-03
119GO:0032973: amino acid export7.68E-03
120GO:0042549: photosystem II stabilization7.68E-03
121GO:0006655: phosphatidylglycerol biosynthetic process7.68E-03
122GO:0009306: protein secretion7.79E-03
123GO:0016117: carotenoid biosynthetic process8.45E-03
124GO:0034389: lipid particle organization9.29E-03
125GO:1901259: chloroplast rRNA processing9.29E-03
126GO:0009648: photoperiodism9.29E-03
127GO:0009955: adaxial/abaxial pattern specification9.29E-03
128GO:0006614: SRP-dependent cotranslational protein targeting to membrane1.10E-02
129GO:0010196: nonphotochemical quenching1.10E-02
130GO:0032880: regulation of protein localization1.10E-02
131GO:0048528: post-embryonic root development1.10E-02
132GO:0043090: amino acid import1.10E-02
133GO:0032508: DNA duplex unwinding1.28E-02
134GO:0000105: histidine biosynthetic process1.28E-02
135GO:0052543: callose deposition in cell wall1.28E-02
136GO:0007186: G-protein coupled receptor signaling pathway1.48E-02
137GO:0009657: plastid organization1.48E-02
138GO:0017004: cytochrome complex assembly1.48E-02
139GO:0022900: electron transport chain1.48E-02
140GO:0015996: chlorophyll catabolic process1.48E-02
141GO:0080144: amino acid homeostasis1.68E-02
142GO:0009821: alkaloid biosynthetic process1.68E-02
143GO:0048354: mucilage biosynthetic process involved in seed coat development1.89E-02
144GO:0005982: starch metabolic process1.89E-02
145GO:0043067: regulation of programmed cell death1.89E-02
146GO:0006949: syncytium formation2.11E-02
147GO:0016311: dephosphorylation2.21E-02
148GO:0009817: defense response to fungus, incompatible interaction2.33E-02
149GO:0009773: photosynthetic electron transport in photosystem I2.34E-02
150GO:0008285: negative regulation of cell proliferation2.34E-02
151GO:0006879: cellular iron ion homeostasis2.34E-02
152GO:0018119: peptidyl-cysteine S-nitrosylation2.34E-02
153GO:0009684: indoleacetic acid biosynthetic process2.34E-02
154GO:0019684: photosynthesis, light reaction2.34E-02
155GO:0006457: protein folding2.50E-02
156GO:0007568: aging2.69E-02
157GO:2000012: regulation of auxin polar transport2.83E-02
158GO:0009725: response to hormone2.83E-02
159GO:0006508: proteolysis2.87E-02
160GO:0045087: innate immune response2.95E-02
161GO:0006412: translation2.96E-02
162GO:0009266: response to temperature stimulus3.08E-02
163GO:0010143: cutin biosynthetic process3.08E-02
164GO:0019853: L-ascorbic acid biosynthetic process3.34E-02
165GO:0071732: cellular response to nitric oxide3.34E-02
166GO:0006631: fatty acid metabolic process3.51E-02
167GO:0009735: response to cytokinin3.56E-02
168GO:0006636: unsaturated fatty acid biosynthetic process3.61E-02
169GO:0006071: glycerol metabolic process3.61E-02
170GO:0000162: tryptophan biosynthetic process3.61E-02
171GO:0007010: cytoskeleton organization3.89E-02
172GO:0006289: nucleotide-excision repair3.89E-02
173GO:0015031: protein transport3.91E-02
174GO:0043622: cortical microtubule organization4.17E-02
175GO:0007017: microtubule-based process4.17E-02
176GO:0010073: meristem maintenance4.17E-02
177GO:0008299: isoprenoid biosynthetic process4.17E-02
178GO:0016575: histone deacetylation4.17E-02
179GO:0006855: drug transmembrane transport4.43E-02
180GO:0016042: lipid catabolic process4.45E-02
181GO:0003333: amino acid transmembrane transport4.46E-02
182GO:0016998: cell wall macromolecule catabolic process4.46E-02
183GO:0010431: seed maturation4.46E-02
184GO:0031408: oxylipin biosynthetic process4.46E-02
185GO:0006629: lipid metabolic process4.64E-02
186GO:0035428: hexose transmembrane transport4.76E-02
187GO:0006730: one-carbon metabolic process4.76E-02
188GO:0031348: negative regulation of defense response4.76E-02
189GO:0080092: regulation of pollen tube growth4.76E-02
190GO:0009664: plant-type cell wall organization4.76E-02
191GO:0019748: secondary metabolic process4.76E-02
192GO:0009814: defense response, incompatible interaction4.76E-02
RankGO TermAdjusted P value
1GO:0008115: sarcosine oxidase activity0.00E+00
2GO:0050613: delta14-sterol reductase activity0.00E+00
3GO:0071522: ureidoglycine aminohydrolase activity0.00E+00
4GO:0043014: alpha-tubulin binding0.00E+00
5GO:0080176: xyloglucan 1,6-alpha-xylosidase activity0.00E+00
6GO:0051721: protein phosphatase 2A binding0.00E+00
7GO:0047538: 2-carboxy-D-arabinitol-1-phosphatase activity0.00E+00
8GO:0050518: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase activity0.00E+00
9GO:0051744: 3,8-divinyl protochlorophyllide a 8-vinyl reductase activity0.00E+00
10GO:0042903: tubulin deacetylase activity0.00E+00
11GO:0004823: leucine-tRNA ligase activity0.00E+00
12GO:0045435: lycopene epsilon cyclase activity0.00E+00
13GO:0003858: 3-hydroxybutyrate dehydrogenase activity0.00E+00
14GO:0004822: isoleucine-tRNA ligase activity0.00E+00
15GO:0030604: 1-deoxy-D-xylulose-5-phosphate reductoisomerase activity0.00E+00
16GO:0003949: 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide isomerase activity0.00E+00
17GO:0033819: lipoyl(octanoyl) transferase activity0.00E+00
18GO:0005048: signal sequence binding0.00E+00
19GO:0004076: biotin synthase activity0.00E+00
20GO:0043136: glycerol-3-phosphatase activity0.00E+00
21GO:0000121: glycerol-1-phosphatase activity0.00E+00
22GO:0019144: ADP-sugar diphosphatase activity0.00E+00
23GO:0061634: alpha-D-xyloside xylohydrolase0.00E+00
24GO:0033728: divinyl chlorophyllide a 8-vinyl-reductase activity0.00E+00
25GO:0010349: L-galactose dehydrogenase activity0.00E+00
26GO:0050567: glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity0.00E+00
27GO:0043864: indoleacetamide hydrolase activity0.00E+00
28GO:0050236: pyridoxine:NADP 4-dehydrogenase activity0.00E+00
29GO:0070402: NADPH binding2.97E-07
30GO:0016851: magnesium chelatase activity1.40E-06
31GO:0001053: plastid sigma factor activity3.95E-06
32GO:0016987: sigma factor activity3.95E-06
33GO:0003755: peptidyl-prolyl cis-trans isomerase activity5.68E-06
34GO:0008839: 4-hydroxy-tetrahydrodipicolinate reductase2.02E-05
35GO:0002161: aminoacyl-tRNA editing activity6.60E-05
36GO:0030267: glyoxylate reductase (NADP) activity6.60E-05
37GO:0016788: hydrolase activity, acting on ester bonds9.02E-05
38GO:0016149: translation release factor activity, codon specific1.37E-04
39GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor2.33E-04
40GO:0004040: amidase activity3.50E-04
41GO:0004366: glycerol-3-phosphate O-acyltransferase activity4.87E-04
42GO:2001070: starch binding4.87E-04
43GO:0005528: FK506 binding5.92E-04
44GO:0004616: phosphogluconate dehydrogenase (decarboxylating) activity6.45E-04
45GO:0008236: serine-type peptidase activity6.85E-04
46GO:0080042: ADP-glucose pyrophosphohydrolase activity6.88E-04
47GO:0050308: sugar-phosphatase activity6.88E-04
48GO:0019203: carbohydrate phosphatase activity6.88E-04
49GO:0005080: protein kinase C binding6.88E-04
50GO:0004325: ferrochelatase activity6.88E-04
51GO:0030785: [ribulose-bisphosphate carboxylase]-lysine N-methyltransferase activity6.88E-04
52GO:0004853: uroporphyrinogen decarboxylase activity6.88E-04
53GO:0042586: peptide deformylase activity6.88E-04
54GO:0016784: 3-mercaptopyruvate sulfurtransferase activity6.88E-04
55GO:0005344: oxygen transporter activity6.88E-04
56GO:0042286: glutamate-1-semialdehyde 2,1-aminomutase activity6.88E-04
57GO:0005227: calcium activated cation channel activity6.88E-04
58GO:0003864: 3-methyl-2-oxobutanoate hydroxymethyltransferase activity6.88E-04
59GO:0004856: xylulokinase activity6.88E-04
60GO:0009496: plastoquinol--plastocyanin reductase activity6.88E-04
61GO:0004033: aldo-keto reductase (NADP) activity1.02E-03
62GO:0003993: acid phosphatase activity1.14E-03
63GO:0004829: threonine-tRNA ligase activity1.48E-03
64GO:0047158: sinapoylglucose-sinapoylglucose O-sinapoyltransferase activity1.48E-03
65GO:0019156: isoamylase activity1.48E-03
66GO:0004826: phenylalanine-tRNA ligase activity1.48E-03
67GO:0017118: lipoyltransferase activity1.48E-03
68GO:0042389: omega-3 fatty acid desaturase activity1.48E-03
69GO:0080041: ADP-ribose pyrophosphohydrolase activity1.48E-03
70GO:0004326: tetrahydrofolylpolyglutamate synthase activity1.48E-03
71GO:0009977: proton motive force dependent protein transmembrane transporter activity1.48E-03
72GO:0016415: octanoyltransferase activity1.48E-03
73GO:0015173: aromatic amino acid transmembrane transporter activity1.48E-03
74GO:0004817: cysteine-tRNA ligase activity1.48E-03
75GO:0016630: protochlorophyllide reductase activity1.48E-03
76GO:0003747: translation release factor activity1.49E-03
77GO:0048038: quinone binding1.87E-03
78GO:0003913: DNA photolyase activity2.45E-03
79GO:0003955: NAD(P)H dehydrogenase (quinone) activity2.45E-03
80GO:0004148: dihydrolipoyl dehydrogenase activity2.45E-03
81GO:0004751: ribose-5-phosphate isomerase activity2.45E-03
82GO:0015462: ATPase-coupled protein transmembrane transporter activity2.45E-03
83GO:0004180: carboxypeptidase activity2.45E-03
84GO:0005504: fatty acid binding2.45E-03
85GO:0000049: tRNA binding2.74E-03
86GO:0016491: oxidoreductase activity3.06E-03
87GO:0031072: heat shock protein binding3.12E-03
88GO:0003743: translation initiation factor activity3.33E-03
89GO:0048487: beta-tubulin binding3.56E-03
90GO:0004792: thiosulfate sulfurtransferase activity3.56E-03
91GO:0016628: oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor3.56E-03
92GO:0043023: ribosomal large subunit binding3.56E-03
93GO:0001872: (1->3)-beta-D-glucan binding3.56E-03
94GO:0004222: metalloendopeptidase activity4.80E-03
95GO:0009044: xylan 1,4-beta-xylosidase activity4.81E-03
96GO:0004607: phosphatidylcholine-sterol O-acyltransferase activity4.81E-03
97GO:0046556: alpha-L-arabinofuranosidase activity4.81E-03
98GO:0016279: protein-lysine N-methyltransferase activity4.81E-03
99GO:0004045: aminoacyl-tRNA hydrolase activity4.81E-03
100GO:0016810: hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds4.81E-03
101GO:0070628: proteasome binding4.81E-03
102GO:0045430: chalcone isomerase activity4.81E-03
103GO:0016787: hydrolase activity4.98E-03
104GO:0016614: oxidoreductase activity, acting on CH-OH group of donors5.10E-03
105GO:0005275: amine transmembrane transporter activity6.18E-03
106GO:0016773: phosphotransferase activity, alcohol group as acceptor6.18E-03
107GO:0008374: O-acyltransferase activity6.18E-03
108GO:0003959: NADPH dehydrogenase activity6.18E-03
109GO:0030570: pectate lyase activity7.15E-03
110GO:0004556: alpha-amylase activity7.68E-03
111GO:0042578: phosphoric ester hydrolase activity7.68E-03
112GO:0090447: glycerol-3-phosphate 2-O-acyltransferase activity7.68E-03
113GO:0031593: polyubiquitin binding7.68E-03
114GO:0004812: aminoacyl-tRNA ligase activity8.45E-03
115GO:0016832: aldehyde-lyase activity9.29E-03
116GO:0004144: diacylglycerol O-acyltransferase activity9.29E-03
117GO:0004723: calcium-dependent protein serine/threonine phosphatase activity9.29E-03
118GO:0005261: cation channel activity9.29E-03
119GO:0051920: peroxiredoxin activity9.29E-03
120GO:0009881: photoreceptor activity1.10E-02
121GO:0003899: DNA-directed 5'-3' RNA polymerase activity1.17E-02
122GO:0043022: ribosome binding1.28E-02
123GO:0005337: nucleoside transmembrane transporter activity1.28E-02
124GO:0016209: antioxidant activity1.28E-02
125GO:0008312: 7S RNA binding1.28E-02
126GO:0008173: RNA methyltransferase activity1.48E-02
127GO:0016717: oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water1.48E-02
128GO:0032041: NAD-dependent histone deacetylase activity (H3-K14 specific)1.48E-02
129GO:0005525: GTP binding1.57E-02
130GO:0008138: protein tyrosine/serine/threonine phosphatase activity1.68E-02
131GO:0005381: iron ion transmembrane transporter activity1.89E-02
132GO:0030955: potassium ion binding1.89E-02
133GO:0016844: strictosidine synthase activity1.89E-02
134GO:0004743: pyruvate kinase activity1.89E-02
135GO:0005089: Rho guanyl-nucleotide exchange factor activity2.34E-02
136GO:0047372: acylglycerol lipase activity2.34E-02
137GO:0019843: rRNA binding2.43E-02
138GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen2.51E-02
139GO:0003723: RNA binding2.74E-02
140GO:0003746: translation elongation factor activity2.95E-02
141GO:0052689: carboxylic ester hydrolase activity3.05E-02
142GO:0042973: glucan endo-1,3-beta-D-glucosidase activity3.08E-02
143GO:0008266: poly(U) RNA binding3.08E-02
144GO:0008083: growth factor activity3.08E-02
145GO:0051536: iron-sulfur cluster binding3.89E-02
146GO:0004857: enzyme inhibitor activity3.89E-02
147GO:0004407: histone deacetylase activity3.89E-02
148GO:0043130: ubiquitin binding3.89E-02
149GO:0051537: 2 iron, 2 sulfur cluster binding4.11E-02
150GO:0051087: chaperone binding4.17E-02
151GO:0003735: structural constituent of ribosome4.52E-02
152GO:0047262: polygalacturonate 4-alpha-galacturonosyltransferase activity4.76E-02
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Gene type



Gene DE type