GO Enrichment Analysis of Co-expressed Genes with
AT4G39510
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0045176: apical protein localization | 0.00E+00 |
| 2 | GO:2001294: malonyl-CoA catabolic process | 0.00E+00 |
| 3 | GO:0090697: post-embryonic plant organ morphogenesis | 0.00E+00 |
| 4 | GO:0006480: N-terminal protein amino acid methylation | 0.00E+00 |
| 5 | GO:0042966: biotin carboxyl carrier protein biosynthetic process | 0.00E+00 |
| 6 | GO:0061157: mRNA destabilization | 0.00E+00 |
| 7 | GO:2000469: negative regulation of peroxidase activity | 0.00E+00 |
| 8 | GO:0090706: specification of plant organ position | 0.00E+00 |
| 9 | GO:2000121: regulation of removal of superoxide radicals | 0.00E+00 |
| 10 | GO:0007037: vacuolar phosphate transport | 0.00E+00 |
| 11 | GO:0006168: adenine salvage | 3.21E-05 |
| 12 | GO:0006166: purine ribonucleoside salvage | 3.21E-05 |
| 13 | GO:1902183: regulation of shoot apical meristem development | 9.10E-05 |
| 14 | GO:0044209: AMP salvage | 9.10E-05 |
| 15 | GO:0010158: abaxial cell fate specification | 9.10E-05 |
| 16 | GO:0009088: threonine biosynthetic process | 1.81E-04 |
| 17 | GO:0000079: regulation of cyclin-dependent protein serine/threonine kinase activity | 1.81E-04 |
| 18 | GO:0006264: mitochondrial DNA replication | 2.97E-04 |
| 19 | GO:0033259: plastid DNA replication | 2.97E-04 |
| 20 | GO:0010450: inflorescence meristem growth | 2.97E-04 |
| 21 | GO:0051171: regulation of nitrogen compound metabolic process | 2.97E-04 |
| 22 | GO:0007155: cell adhesion | 2.98E-04 |
| 23 | GO:2000024: regulation of leaf development | 4.41E-04 |
| 24 | GO:1905011: transmembrane phosphate ion transport from cytosol to vacuole | 6.50E-04 |
| 25 | GO:0010115: regulation of abscisic acid biosynthetic process | 6.50E-04 |
| 26 | GO:1900871: chloroplast mRNA modification | 6.50E-04 |
| 27 | GO:0007154: cell communication | 6.50E-04 |
| 28 | GO:1900033: negative regulation of trichome patterning | 6.50E-04 |
| 29 | GO:0048527: lateral root development | 1.03E-03 |
| 30 | GO:0006753: nucleoside phosphate metabolic process | 1.05E-03 |
| 31 | GO:0045165: cell fate commitment | 1.05E-03 |
| 32 | GO:0051127: positive regulation of actin nucleation | 1.05E-03 |
| 33 | GO:0009405: pathogenesis | 1.05E-03 |
| 34 | GO:0009416: response to light stimulus | 1.24E-03 |
| 35 | GO:0042753: positive regulation of circadian rhythm | 1.27E-03 |
| 36 | GO:0009944: polarity specification of adaxial/abaxial axis | 1.40E-03 |
| 37 | GO:0010187: negative regulation of seed germination | 1.40E-03 |
| 38 | GO:0006164: purine nucleotide biosynthetic process | 1.51E-03 |
| 39 | GO:0009963: positive regulation of flavonoid biosynthetic process | 1.51E-03 |
| 40 | GO:0009647: skotomorphogenesis | 1.51E-03 |
| 41 | GO:0010255: glucose mediated signaling pathway | 1.51E-03 |
| 42 | GO:0009067: aspartate family amino acid biosynthetic process | 1.51E-03 |
| 43 | GO:0009649: entrainment of circadian clock | 2.02E-03 |
| 44 | GO:0032366: intracellular sterol transport | 2.02E-03 |
| 45 | GO:0006021: inositol biosynthetic process | 2.02E-03 |
| 46 | GO:0048629: trichome patterning | 2.02E-03 |
| 47 | GO:0048442: sepal development | 2.02E-03 |
| 48 | GO:0051322: anaphase | 2.02E-03 |
| 49 | GO:0009585: red, far-red light phototransduction | 2.31E-03 |
| 50 | GO:0006544: glycine metabolic process | 2.58E-03 |
| 51 | GO:0046283: anthocyanin-containing compound metabolic process | 2.58E-03 |
| 52 | GO:0045038: protein import into chloroplast thylakoid membrane | 2.58E-03 |
| 53 | GO:0034052: positive regulation of plant-type hypersensitive response | 2.58E-03 |
| 54 | GO:0010154: fruit development | 2.77E-03 |
| 55 | GO:0000741: karyogamy | 3.19E-03 |
| 56 | GO:0046855: inositol phosphate dephosphorylation | 3.19E-03 |
| 57 | GO:1902456: regulation of stomatal opening | 3.19E-03 |
| 58 | GO:0006561: proline biosynthetic process | 3.19E-03 |
| 59 | GO:0006563: L-serine metabolic process | 3.19E-03 |
| 60 | GO:0006751: glutathione catabolic process | 3.19E-03 |
| 61 | GO:0048827: phyllome development | 3.19E-03 |
| 62 | GO:0009959: negative gravitropism | 3.19E-03 |
| 63 | GO:0048825: cotyledon development | 3.20E-03 |
| 64 | GO:0009740: gibberellic acid mediated signaling pathway | 3.35E-03 |
| 65 | GO:0010583: response to cyclopentenone | 3.65E-03 |
| 66 | GO:0042372: phylloquinone biosynthetic process | 3.84E-03 |
| 67 | GO:0010076: maintenance of floral meristem identity | 3.84E-03 |
| 68 | GO:0048280: vesicle fusion with Golgi apparatus | 3.84E-03 |
| 69 | GO:0010189: vitamin E biosynthetic process | 3.84E-03 |
| 70 | GO:0009648: photoperiodism | 3.84E-03 |
| 71 | GO:0006464: cellular protein modification process | 4.15E-03 |
| 72 | GO:0015937: coenzyme A biosynthetic process | 4.53E-03 |
| 73 | GO:0000122: negative regulation of transcription from RNA polymerase II promoter | 4.53E-03 |
| 74 | GO:0030307: positive regulation of cell growth | 4.53E-03 |
| 75 | GO:0010161: red light signaling pathway | 4.53E-03 |
| 76 | GO:0010196: nonphotochemical quenching | 4.53E-03 |
| 77 | GO:0043068: positive regulation of programmed cell death | 5.26E-03 |
| 78 | GO:0010078: maintenance of root meristem identity | 5.26E-03 |
| 79 | GO:0048573: photoperiodism, flowering | 5.82E-03 |
| 80 | GO:0010100: negative regulation of photomorphogenesis | 6.03E-03 |
| 81 | GO:0006997: nucleus organization | 6.03E-03 |
| 82 | GO:0043562: cellular response to nitrogen levels | 6.03E-03 |
| 83 | GO:0010093: specification of floral organ identity | 6.03E-03 |
| 84 | GO:0010099: regulation of photomorphogenesis | 6.03E-03 |
| 85 | GO:0006783: heme biosynthetic process | 6.83E-03 |
| 86 | GO:0006189: 'de novo' IMP biosynthetic process | 6.83E-03 |
| 87 | GO:0009638: phototropism | 7.67E-03 |
| 88 | GO:0010018: far-red light signaling pathway | 7.67E-03 |
| 89 | GO:1900865: chloroplast RNA modification | 7.67E-03 |
| 90 | GO:0048354: mucilage biosynthetic process involved in seed coat development | 7.67E-03 |
| 91 | GO:0010380: regulation of chlorophyll biosynthetic process | 7.67E-03 |
| 92 | GO:0048441: petal development | 8.55E-03 |
| 93 | GO:0009299: mRNA transcription | 8.55E-03 |
| 94 | GO:0006535: cysteine biosynthetic process from serine | 8.55E-03 |
| 95 | GO:0009688: abscisic acid biosynthetic process | 8.55E-03 |
| 96 | GO:0009641: shade avoidance | 8.55E-03 |
| 97 | GO:0010192: mucilage biosynthetic process | 8.55E-03 |
| 98 | GO:0006896: Golgi to vacuole transport | 8.55E-03 |
| 99 | GO:0009089: lysine biosynthetic process via diaminopimelate | 9.46E-03 |
| 100 | GO:0009750: response to fructose | 9.46E-03 |
| 101 | GO:0009684: indoleacetic acid biosynthetic process | 9.46E-03 |
| 102 | GO:0006790: sulfur compound metabolic process | 1.04E-02 |
| 103 | GO:0010229: inflorescence development | 1.14E-02 |
| 104 | GO:0030036: actin cytoskeleton organization | 1.14E-02 |
| 105 | GO:0009725: response to hormone | 1.14E-02 |
| 106 | GO:0010588: cotyledon vascular tissue pattern formation | 1.14E-02 |
| 107 | GO:0009933: meristem structural organization | 1.24E-02 |
| 108 | GO:0010540: basipetal auxin transport | 1.24E-02 |
| 109 | GO:0006302: double-strand break repair | 1.24E-02 |
| 110 | GO:0048467: gynoecium development | 1.24E-02 |
| 111 | GO:0048440: carpel development | 1.24E-02 |
| 112 | GO:0006541: glutamine metabolic process | 1.24E-02 |
| 113 | GO:0019853: L-ascorbic acid biosynthetic process | 1.34E-02 |
| 114 | GO:0010030: positive regulation of seed germination | 1.34E-02 |
| 115 | GO:0046854: phosphatidylinositol phosphorylation | 1.34E-02 |
| 116 | GO:0009825: multidimensional cell growth | 1.34E-02 |
| 117 | GO:0000162: tryptophan biosynthetic process | 1.45E-02 |
| 118 | GO:0009723: response to ethylene | 1.53E-02 |
| 119 | GO:0007010: cytoskeleton organization | 1.56E-02 |
| 120 | GO:0019344: cysteine biosynthetic process | 1.56E-02 |
| 121 | GO:0000027: ribosomal large subunit assembly | 1.56E-02 |
| 122 | GO:0009909: regulation of flower development | 1.58E-02 |
| 123 | GO:0007017: microtubule-based process | 1.68E-02 |
| 124 | GO:0048367: shoot system development | 1.75E-02 |
| 125 | GO:0051321: meiotic cell cycle | 1.79E-02 |
| 126 | GO:0048511: rhythmic process | 1.79E-02 |
| 127 | GO:0019915: lipid storage | 1.79E-02 |
| 128 | GO:0035428: hexose transmembrane transport | 1.91E-02 |
| 129 | GO:0009814: defense response, incompatible interaction | 1.91E-02 |
| 130 | GO:0009733: response to auxin | 1.92E-02 |
| 131 | GO:0071215: cellular response to abscisic acid stimulus | 2.03E-02 |
| 132 | GO:0009686: gibberellin biosynthetic process | 2.03E-02 |
| 133 | GO:0045892: negative regulation of transcription, DNA-templated | 2.13E-02 |
| 134 | GO:0051726: regulation of cell cycle | 2.16E-02 |
| 135 | GO:0009742: brassinosteroid mediated signaling pathway | 2.16E-02 |
| 136 | GO:0048443: stamen development | 2.16E-02 |
| 137 | GO:0009789: positive regulation of abscisic acid-activated signaling pathway | 2.29E-02 |
| 138 | GO:0042147: retrograde transport, endosome to Golgi | 2.29E-02 |
| 139 | GO:0000271: polysaccharide biosynthetic process | 2.42E-02 |
| 140 | GO:0080022: primary root development | 2.42E-02 |
| 141 | GO:0010087: phloem or xylem histogenesis | 2.42E-02 |
| 142 | GO:0042631: cellular response to water deprivation | 2.42E-02 |
| 143 | GO:0009958: positive gravitropism | 2.55E-02 |
| 144 | GO:0010197: polar nucleus fusion | 2.55E-02 |
| 145 | GO:0010182: sugar mediated signaling pathway | 2.55E-02 |
| 146 | GO:0046323: glucose import | 2.55E-02 |
| 147 | GO:0009741: response to brassinosteroid | 2.55E-02 |
| 148 | GO:0045489: pectin biosynthetic process | 2.55E-02 |
| 149 | GO:0007018: microtubule-based movement | 2.68E-02 |
| 150 | GO:0009646: response to absence of light | 2.68E-02 |
| 151 | GO:0006629: lipid metabolic process | 2.72E-02 |
| 152 | GO:0008654: phospholipid biosynthetic process | 2.82E-02 |
| 153 | GO:0009851: auxin biosynthetic process | 2.82E-02 |
| 154 | GO:0006623: protein targeting to vacuole | 2.82E-02 |
| 155 | GO:0006891: intra-Golgi vesicle-mediated transport | 2.96E-02 |
| 156 | GO:0048510: regulation of timing of transition from vegetative to reproductive phase | 2.96E-02 |
| 157 | GO:0071554: cell wall organization or biogenesis | 2.96E-02 |
| 158 | GO:0040008: regulation of growth | 3.36E-02 |
| 159 | GO:0009639: response to red or far red light | 3.39E-02 |
| 160 | GO:0010252: auxin homeostasis | 3.39E-02 |
| 161 | GO:0007623: circadian rhythm | 3.52E-02 |
| 162 | GO:0045490: pectin catabolic process | 3.52E-02 |
| 163 | GO:0000910: cytokinesis | 3.70E-02 |
| 164 | GO:0009911: positive regulation of flower development | 3.85E-02 |
| 165 | GO:0009739: response to gibberellin | 3.93E-02 |
| 166 | GO:0010029: regulation of seed germination | 4.00E-02 |
| 167 | GO:0016567: protein ubiquitination | 4.18E-02 |
| 168 | GO:0006888: ER to Golgi vesicle-mediated transport | 4.32E-02 |
| 169 | GO:0015995: chlorophyll biosynthetic process | 4.32E-02 |
| 170 | GO:0009908: flower development | 4.87E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0004639: phosphoribosylaminoimidazolesuccinocarboxamide synthase activity | 0.00E+00 |
| 2 | GO:0004077: biotin-[acetyl-CoA-carboxylase] ligase activity | 0.00E+00 |
| 3 | GO:0010276: phytol kinase activity | 0.00E+00 |
| 4 | GO:0008756: o-succinylbenzoate-CoA ligase activity | 0.00E+00 |
| 5 | GO:1990534: thermospermine oxidase activity | 0.00E+00 |
| 6 | GO:0004078: biotin-[methylcrotonoyl-CoA-carboxylase] ligase activity | 0.00E+00 |
| 7 | GO:0010301: xanthoxin dehydrogenase activity | 0.00E+00 |
| 8 | GO:0003999: adenine phosphoribosyltransferase activity | 3.21E-05 |
| 9 | GO:0004795: threonine synthase activity | 2.97E-04 |
| 10 | GO:0010945: CoA pyrophosphatase activity | 2.97E-04 |
| 11 | GO:0010313: phytochrome binding | 2.97E-04 |
| 12 | GO:0019210: kinase inhibitor activity | 2.97E-04 |
| 13 | GO:0010347: L-galactose-1-phosphate phosphatase activity | 2.97E-04 |
| 14 | GO:0050139: nicotinate-N-glucosyltransferase activity | 2.97E-04 |
| 15 | GO:0080097: L-tryptophan:pyruvate aminotransferase activity | 6.50E-04 |
| 16 | GO:0050017: L-3-cyanoalanine synthase activity | 6.50E-04 |
| 17 | GO:0017118: lipoyltransferase activity | 6.50E-04 |
| 18 | GO:0003839: gamma-glutamylcyclotransferase activity | 6.50E-04 |
| 19 | GO:0043425: bHLH transcription factor binding | 6.50E-04 |
| 20 | GO:0050362: L-tryptophan:2-oxoglutarate aminotransferase activity | 6.50E-04 |
| 21 | GO:0052832: inositol monophosphate 3-phosphatase activity | 6.50E-04 |
| 22 | GO:0008934: inositol monophosphate 1-phosphatase activity | 6.50E-04 |
| 23 | GO:0052833: inositol monophosphate 4-phosphatase activity | 6.50E-04 |
| 24 | GO:0015929: hexosaminidase activity | 6.50E-04 |
| 25 | GO:0004563: beta-N-acetylhexosaminidase activity | 6.50E-04 |
| 26 | GO:0090729: toxin activity | 1.05E-03 |
| 27 | GO:0004049: anthranilate synthase activity | 1.05E-03 |
| 28 | GO:0003913: DNA photolyase activity | 1.05E-03 |
| 29 | GO:0004148: dihydrolipoyl dehydrogenase activity | 1.05E-03 |
| 30 | GO:0008893: guanosine-3',5'-bis(diphosphate) 3'-diphosphatase activity | 1.51E-03 |
| 31 | GO:0004072: aspartate kinase activity | 1.51E-03 |
| 32 | GO:0008017: microtubule binding | 1.52E-03 |
| 33 | GO:0030570: pectate lyase activity | 2.02E-03 |
| 34 | GO:0008409: 5'-3' exonuclease activity | 2.02E-03 |
| 35 | GO:0080032: methyl jasmonate esterase activity | 2.02E-03 |
| 36 | GO:0004372: glycine hydroxymethyltransferase activity | 2.58E-03 |
| 37 | GO:0070696: transmembrane receptor protein serine/threonine kinase binding | 2.58E-03 |
| 38 | GO:0016846: carbon-sulfur lyase activity | 2.58E-03 |
| 39 | GO:0003777: microtubule motor activity | 2.63E-03 |
| 40 | GO:0001085: RNA polymerase II transcription factor binding | 2.77E-03 |
| 41 | GO:0000210: NAD+ diphosphatase activity | 3.19E-03 |
| 42 | GO:0016208: AMP binding | 3.19E-03 |
| 43 | GO:0004605: phosphatidate cytidylyltransferase activity | 3.19E-03 |
| 44 | GO:0019901: protein kinase binding | 3.20E-03 |
| 45 | GO:0004124: cysteine synthase activity | 3.84E-03 |
| 46 | GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity | 3.84E-03 |
| 47 | GO:0005338: nucleotide-sugar transmembrane transporter activity | 4.53E-03 |
| 48 | GO:0000977: RNA polymerase II regulatory region sequence-specific DNA binding | 5.68E-03 |
| 49 | GO:0030247: polysaccharide binding | 5.82E-03 |
| 50 | GO:0003700: transcription factor activity, sequence-specific DNA binding | 6.95E-03 |
| 51 | GO:0004693: cyclin-dependent protein serine/threonine kinase activity | 7.11E-03 |
| 52 | GO:0050897: cobalt ion binding | 7.46E-03 |
| 53 | GO:0001228: transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding | 7.46E-03 |
| 54 | GO:0008794: arsenate reductase (glutaredoxin) activity | 9.46E-03 |
| 55 | GO:0047372: acylglycerol lipase activity | 9.46E-03 |
| 56 | GO:0042802: identical protein binding | 9.86E-03 |
| 57 | GO:0000976: transcription regulatory region sequence-specific DNA binding | 1.04E-02 |
| 58 | GO:0008081: phosphoric diester hydrolase activity | 1.14E-02 |
| 59 | GO:0004022: alcohol dehydrogenase (NAD) activity | 1.14E-02 |
| 60 | GO:0008131: primary amine oxidase activity | 1.24E-02 |
| 61 | GO:0042973: glucan endo-1,3-beta-D-glucosidase activity | 1.24E-02 |
| 62 | GO:0008146: sulfotransferase activity | 1.34E-02 |
| 63 | GO:0003887: DNA-directed DNA polymerase activity | 1.45E-02 |
| 64 | GO:0005528: FK506 binding | 1.56E-02 |
| 65 | GO:0044212: transcription regulatory region DNA binding | 1.58E-02 |
| 66 | GO:0019706: protein-cysteine S-palmitoyltransferase activity | 1.79E-02 |
| 67 | GO:0008408: 3'-5' exonuclease activity | 1.79E-02 |
| 68 | GO:0047262: polygalacturonate 4-alpha-galacturonosyltransferase activity | 1.91E-02 |
| 69 | GO:0003727: single-stranded RNA binding | 2.16E-02 |
| 70 | GO:0005355: glucose transmembrane transporter activity | 2.68E-02 |
| 71 | GO:0016829: lyase activity | 2.76E-02 |
| 72 | GO:0008270: zinc ion binding | 3.52E-02 |
| 73 | GO:0016722: oxidoreductase activity, oxidizing metal ions | 3.55E-02 |
| 74 | GO:0016597: amino acid binding | 3.70E-02 |
| 75 | GO:0016413: O-acetyltransferase activity | 3.70E-02 |
| 76 | GO:0004721: phosphoprotein phosphatase activity | 4.32E-02 |