Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT4G39040

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0090279: regulation of calcium ion import0.00E+00
2GO:0090071: negative regulation of ribosome biogenesis0.00E+00
3GO:0044249: cellular biosynthetic process0.00E+00
4GO:0031116: positive regulation of microtubule polymerization0.00E+00
5GO:0090470: shoot organ boundary specification0.00E+00
6GO:0042820: vitamin B6 catabolic process0.00E+00
7GO:0042407: cristae formation0.00E+00
8GO:0042821: pyridoxal biosynthetic process0.00E+00
9GO:0009106: lipoate metabolic process0.00E+00
10GO:0090042: tubulin deacetylation0.00E+00
11GO:0015882: L-ascorbic acid transport0.00E+00
12GO:0071474: cellular hyperosmotic response0.00E+00
13GO:0018023: peptidyl-lysine trimethylation0.00E+00
14GO:0051484: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway involved in terpenoid biosynthetic process0.00E+00
15GO:0070125: mitochondrial translational elongation0.00E+00
16GO:0009249: protein lipoylation0.00E+00
17GO:2000505: regulation of energy homeostasis0.00E+00
18GO:0002184: cytoplasmic translational termination0.00E+00
19GO:0017038: protein import0.00E+00
20GO:0046460: neutral lipid biosynthetic process0.00E+00
21GO:0032194: ubiquinone biosynthetic process via 3,4-dihydroxy-5-polyprenylbenzoate0.00E+00
22GO:0009658: chloroplast organization4.73E-06
23GO:0010027: thylakoid membrane organization3.17E-05
24GO:0015995: chlorophyll biosynthetic process4.67E-05
25GO:0045038: protein import into chloroplast thylakoid membrane2.65E-04
26GO:0016123: xanthophyll biosynthetic process2.65E-04
27GO:0010207: photosystem II assembly2.68E-04
28GO:0010190: cytochrome b6f complex assembly3.71E-04
29GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway3.71E-04
30GO:1901259: chloroplast rRNA processing4.94E-04
31GO:1902478: negative regulation of defense response to bacterium, incompatible interaction5.75E-04
32GO:0015671: oxygen transport5.75E-04
33GO:0043266: regulation of potassium ion transport5.75E-04
34GO:0042547: cell wall modification involved in multidimensional cell growth5.75E-04
35GO:0042371: vitamin K biosynthetic process5.75E-04
36GO:2000021: regulation of ion homeostasis5.75E-04
37GO:1902458: positive regulation of stomatal opening5.75E-04
38GO:0010028: xanthophyll cycle5.75E-04
39GO:0048363: mucilage pectin metabolic process5.75E-04
40GO:0000023: maltose metabolic process5.75E-04
41GO:0006419: alanyl-tRNA aminoacylation5.75E-04
42GO:0000476: maturation of 4.5S rRNA5.75E-04
43GO:0009443: pyridoxal 5'-phosphate salvage5.75E-04
44GO:0000967: rRNA 5'-end processing5.75E-04
45GO:0046901: tetrahydrofolylpolyglutamate biosynthetic process5.75E-04
46GO:0006605: protein targeting7.87E-04
47GO:0006353: DNA-templated transcription, termination7.87E-04
48GO:0000105: histidine biosynthetic process7.87E-04
49GO:0048564: photosystem I assembly7.87E-04
50GO:0016117: carotenoid biosynthetic process8.36E-04
51GO:0009657: plastid organization9.57E-04
52GO:0032544: plastid translation9.57E-04
53GO:0071482: cellular response to light stimulus9.57E-04
54GO:0019432: triglyceride biosynthetic process1.14E-03
55GO:0010206: photosystem II repair1.14E-03
56GO:1900871: chloroplast mRNA modification1.24E-03
57GO:0006432: phenylalanyl-tRNA aminoacylation1.24E-03
58GO:0007154: cell communication1.24E-03
59GO:0018026: peptidyl-lysine monomethylation1.24E-03
60GO:0071668: plant-type cell wall assembly1.24E-03
61GO:0009220: pyrimidine ribonucleotide biosynthetic process1.24E-03
62GO:0006423: cysteinyl-tRNA aminoacylation1.24E-03
63GO:0006435: threonyl-tRNA aminoacylation1.24E-03
64GO:0080183: response to photooxidative stress1.24E-03
65GO:0001682: tRNA 5'-leader removal1.24E-03
66GO:1903426: regulation of reactive oxygen species biosynthetic process1.24E-03
67GO:0051262: protein tetramerization1.24E-03
68GO:0034470: ncRNA processing1.24E-03
69GO:0009629: response to gravity1.24E-03
70GO:0010198: synergid death1.24E-03
71GO:0006782: protoporphyrinogen IX biosynthetic process1.58E-03
72GO:0006352: DNA-templated transcription, initiation1.82E-03
73GO:0006415: translational termination1.82E-03
74GO:0009089: lysine biosynthetic process via diaminopimelate1.82E-03
75GO:0034051: negative regulation of plant-type hypersensitive response2.03E-03
76GO:0051604: protein maturation2.03E-03
77GO:0015940: pantothenate biosynthetic process2.03E-03
78GO:0001578: microtubule bundle formation2.03E-03
79GO:0045493: xylan catabolic process2.03E-03
80GO:0006617: SRP-dependent cotranslational protein targeting to membrane, signal sequence recognition2.03E-03
81GO:0005977: glycogen metabolic process2.03E-03
82GO:0090506: axillary shoot meristem initiation2.03E-03
83GO:0033591: response to L-ascorbic acid2.03E-03
84GO:0005983: starch catabolic process2.09E-03
85GO:0045037: protein import into chloroplast stroma2.09E-03
86GO:2000012: regulation of auxin polar transport2.38E-03
87GO:0009627: systemic acquired resistance2.44E-03
88GO:0006508: proteolysis2.73E-03
89GO:0043433: negative regulation of sequence-specific DNA binding transcription factor activity2.95E-03
90GO:0006164: purine nucleotide biosynthetic process2.95E-03
91GO:2001141: regulation of RNA biosynthetic process2.95E-03
92GO:0016556: mRNA modification2.95E-03
93GO:0010371: regulation of gibberellin biosynthetic process2.95E-03
94GO:0009102: biotin biosynthetic process2.95E-03
95GO:0046653: tetrahydrofolate metabolic process2.95E-03
96GO:0010239: chloroplast mRNA processing2.95E-03
97GO:0071732: cellular response to nitric oxide3.01E-03
98GO:0090351: seedling development3.01E-03
99GO:0022622: root system development3.97E-03
100GO:0071483: cellular response to blue light3.97E-03
101GO:0044205: 'de novo' UMP biosynthetic process3.97E-03
102GO:0007020: microtubule nucleation3.97E-03
103GO:0010021: amylopectin biosynthetic process3.97E-03
104GO:0010109: regulation of photosynthesis3.97E-03
105GO:0051322: anaphase3.97E-03
106GO:0009765: photosynthesis, light harvesting3.97E-03
107GO:0045087: innate immune response4.04E-03
108GO:0061077: chaperone-mediated protein folding4.53E-03
109GO:0006730: one-carbon metabolic process4.97E-03
110GO:0009790: embryo development5.02E-03
111GO:0006631: fatty acid metabolic process5.04E-03
112GO:0046785: microtubule polymerization5.10E-03
113GO:0046907: intracellular transport5.10E-03
114GO:0010236: plastoquinone biosynthetic process5.10E-03
115GO:0016120: carotene biosynthetic process5.10E-03
116GO:0009107: lipoate biosynthetic process5.10E-03
117GO:0071369: cellular response to ethylene stimulus5.42E-03
118GO:0006413: translational initiation5.82E-03
119GO:0009306: protein secretion5.90E-03
120GO:0015979: photosynthesis6.21E-03
121GO:0016554: cytidine to uridine editing6.33E-03
122GO:0032973: amino acid export6.33E-03
123GO:0006655: phosphatidylglycerol biosynthetic process6.33E-03
124GO:0042793: transcription from plastid promoter6.33E-03
125GO:0009793: embryo development ending in seed dormancy6.65E-03
126GO:0006458: 'de novo' protein folding7.65E-03
127GO:0017148: negative regulation of translation7.65E-03
128GO:0010067: procambium histogenesis7.65E-03
129GO:0042026: protein refolding7.65E-03
130GO:0034389: lipid particle organization7.65E-03
131GO:0030488: tRNA methylation7.65E-03
132GO:0009648: photoperiodism7.65E-03
133GO:0019509: L-methionine salvage from methylthioadenosine7.65E-03
134GO:0042372: phylloquinone biosynthetic process7.65E-03
135GO:0055114: oxidation-reduction process8.51E-03
136GO:0006614: SRP-dependent cotranslational protein targeting to membrane9.06E-03
137GO:0010196: nonphotochemical quenching9.06E-03
138GO:0006400: tRNA modification9.06E-03
139GO:0015693: magnesium ion transport9.06E-03
140GO:0006207: 'de novo' pyrimidine nucleobase biosynthetic process9.06E-03
141GO:0032880: regulation of protein localization9.06E-03
142GO:0048528: post-embryonic root development9.06E-03
143GO:0009772: photosynthetic electron transport in photosystem II9.06E-03
144GO:0043090: amino acid import9.06E-03
145GO:0071281: cellular response to iron ion1.06E-02
146GO:2000070: regulation of response to water deprivation1.06E-02
147GO:0006875: cellular metal ion homeostasis1.06E-02
148GO:0017004: cytochrome complex assembly1.21E-02
149GO:0009932: cell tip growth1.21E-02
150GO:0022900: electron transport chain1.21E-02
151GO:0000910: cytokinesis1.27E-02
152GO:0080144: amino acid homeostasis1.38E-02
153GO:0006783: heme biosynthetic process1.38E-02
154GO:0098656: anion transmembrane transport1.38E-02
155GO:0009821: alkaloid biosynthetic process1.38E-02
156GO:1900865: chloroplast RNA modification1.55E-02
157GO:0048354: mucilage biosynthetic process involved in seed coat development1.55E-02
158GO:0031425: chloroplast RNA processing1.55E-02
159GO:0005982: starch metabolic process1.55E-02
160GO:0043067: regulation of programmed cell death1.55E-02
161GO:0006779: porphyrin-containing compound biosynthetic process1.55E-02
162GO:0045036: protein targeting to chloroplast1.73E-02
163GO:0006949: syncytium formation1.73E-02
164GO:1903507: negative regulation of nucleic acid-templated transcription1.92E-02
165GO:0008285: negative regulation of cell proliferation1.92E-02
166GO:0018119: peptidyl-cysteine S-nitrosylation1.92E-02
167GO:0009684: indoleacetic acid biosynthetic process1.92E-02
168GO:0010015: root morphogenesis1.92E-02
169GO:0019684: photosynthesis, light reaction1.92E-02
170GO:0007568: aging2.04E-02
171GO:0016024: CDP-diacylglycerol biosynthetic process2.12E-02
172GO:0015031: protein transport2.23E-02
173GO:0009725: response to hormone2.32E-02
174GO:0010020: chloroplast fission2.53E-02
175GO:0009409: response to cold2.54E-02
176GO:0006071: glycerol metabolic process2.96E-02
177GO:0000162: tryptophan biosynthetic process2.96E-02
178GO:0009116: nucleoside metabolic process3.19E-02
179GO:0005975: carbohydrate metabolic process3.20E-02
180GO:0006397: mRNA processing3.31E-02
181GO:0006855: drug transmembrane transport3.36E-02
182GO:0016575: histone deacetylation3.42E-02
183GO:0043622: cortical microtubule organization3.42E-02
184GO:0007017: microtubule-based process3.42E-02
185GO:0010073: meristem maintenance3.42E-02
186GO:0008299: isoprenoid biosynthetic process3.42E-02
187GO:0042538: hyperosmotic salinity response3.62E-02
188GO:0016114: terpenoid biosynthetic process3.66E-02
189GO:0048511: rhythmic process3.66E-02
190GO:0006364: rRNA processing3.88E-02
191GO:2000022: regulation of jasmonic acid mediated signaling pathway3.90E-02
192GO:0035428: hexose transmembrane transport3.90E-02
193GO:0007005: mitochondrion organization3.90E-02
194GO:0031348: negative regulation of defense response3.90E-02
195GO:0019748: secondary metabolic process3.90E-02
196GO:0009814: defense response, incompatible interaction3.90E-02
197GO:0009831: plant-type cell wall modification involved in multidimensional cell growth4.15E-02
198GO:0010227: floral organ abscission4.15E-02
199GO:0010089: xylem development4.41E-02
200GO:0051028: mRNA transport4.67E-02
201GO:0008284: positive regulation of cell proliferation4.67E-02
202GO:0009789: positive regulation of abscisic acid-activated signaling pathway4.67E-02
203GO:0000271: polysaccharide biosynthetic process4.93E-02
204GO:0042335: cuticle development4.93E-02
205GO:0008033: tRNA processing4.93E-02
206GO:0010087: phloem or xylem histogenesis4.93E-02
207GO:0006606: protein import into nucleus4.93E-02
RankGO TermAdjusted P value
1GO:0008115: sarcosine oxidase activity0.00E+00
2GO:0005363: maltose transmembrane transporter activity0.00E+00
3GO:0004590: orotidine-5'-phosphate decarboxylase activity0.00E+00
4GO:0050236: pyridoxine:NADP 4-dehydrogenase activity0.00E+00
5GO:0050613: delta14-sterol reductase activity0.00E+00
6GO:0050515: 4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase activity0.00E+00
7GO:0004635: phosphoribosyl-AMP cyclohydrolase activity0.00E+00
8GO:0046523: S-methyl-5-thioribose-1-phosphate isomerase activity0.00E+00
9GO:0043014: alpha-tubulin binding0.00E+00
10GO:0004643: phosphoribosylaminoimidazolecarboxamide formyltransferase activity0.00E+00
11GO:0080176: xyloglucan 1,6-alpha-xylosidase activity0.00E+00
12GO:0051721: protein phosphatase 2A binding0.00E+00
13GO:0047538: 2-carboxy-D-arabinitol-1-phosphatase activity0.00E+00
14GO:0015229: L-ascorbic acid transporter activity0.00E+00
15GO:0042903: tubulin deacetylase activity0.00E+00
16GO:0046428: 1,4-dihydroxy-2-naphthoate octaprenyltransferase activity0.00E+00
17GO:0003858: 3-hydroxybutyrate dehydrogenase activity0.00E+00
18GO:0045435: lycopene epsilon cyclase activity0.00E+00
19GO:0030604: 1-deoxy-D-xylulose-5-phosphate reductoisomerase activity0.00E+00
20GO:0004636: phosphoribosyl-ATP diphosphatase activity0.00E+00
21GO:0003949: 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide isomerase activity0.00E+00
22GO:0033819: lipoyl(octanoyl) transferase activity0.00E+00
23GO:0005048: signal sequence binding0.00E+00
24GO:0004076: biotin synthase activity0.00E+00
25GO:0003937: IMP cyclohydrolase activity0.00E+00
26GO:0061634: alpha-D-xyloside xylohydrolase0.00E+00
27GO:0043864: indoleacetamide hydrolase activity0.00E+00
28GO:0004588: orotate phosphoribosyltransferase activity0.00E+00
29GO:0070402: NADPH binding1.80E-07
30GO:0008839: 4-hydroxy-tetrahydrodipicolinate reductase1.44E-05
31GO:0004326: tetrahydrofolylpolyglutamate synthase activity1.44E-05
32GO:0016149: translation release factor activity, codon specific1.01E-04
33GO:0016851: magnesium chelatase activity1.01E-04
34GO:0043023: ribosomal large subunit binding1.01E-04
35GO:0005525: GTP binding1.03E-04
36GO:0016987: sigma factor activity1.74E-04
37GO:0001053: plastid sigma factor activity1.74E-04
38GO:0003755: peptidyl-prolyl cis-trans isomerase activity2.33E-04
39GO:0004040: amidase activity2.65E-04
40GO:0005528: FK506 binding4.18E-04
41GO:0004017: adenylate kinase activity4.94E-04
42GO:0004813: alanine-tRNA ligase activity5.75E-04
43GO:0005080: protein kinase C binding5.75E-04
44GO:0015088: copper uptake transmembrane transporter activity5.75E-04
45GO:0030785: [ribulose-bisphosphate carboxylase]-lysine N-methyltransferase activity5.75E-04
46GO:0004853: uroporphyrinogen decarboxylase activity5.75E-04
47GO:0016784: 3-mercaptopyruvate sulfurtransferase activity5.75E-04
48GO:0005344: oxygen transporter activity5.75E-04
49GO:0042286: glutamate-1-semialdehyde 2,1-aminomutase activity5.75E-04
50GO:0005227: calcium activated cation channel activity5.75E-04
51GO:0004856: xylulokinase activity5.75E-04
52GO:0003864: 3-methyl-2-oxobutanoate hydroxymethyltransferase activity5.75E-04
53GO:0009496: plastoquinol--plastocyanin reductase activity5.75E-04
54GO:0050567: glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity5.75E-04
55GO:0003747: translation release factor activity1.14E-03
56GO:0004829: threonine-tRNA ligase activity1.24E-03
57GO:0019156: isoamylase activity1.24E-03
58GO:0047158: sinapoylglucose-sinapoylglucose O-sinapoyltransferase activity1.24E-03
59GO:0004826: phenylalanine-tRNA ligase activity1.24E-03
60GO:0010291: carotene beta-ring hydroxylase activity1.24E-03
61GO:0017118: lipoyltransferase activity1.24E-03
62GO:0009977: proton motive force dependent protein transmembrane transporter activity1.24E-03
63GO:0016415: octanoyltransferase activity1.24E-03
64GO:0004817: cysteine-tRNA ligase activity1.24E-03
65GO:0016630: protochlorophyllide reductase activity1.24E-03
66GO:0008237: metallopeptidase activity1.83E-03
67GO:0003955: NAD(P)H dehydrogenase (quinone) activity2.03E-03
68GO:0003913: DNA photolyase activity2.03E-03
69GO:0004148: dihydrolipoyl dehydrogenase activity2.03E-03
70GO:0030267: glyoxylate reductase (NADP) activity2.03E-03
71GO:0015462: ATPase-coupled protein transmembrane transporter activity2.03E-03
72GO:0005504: fatty acid binding2.03E-03
73GO:0000049: tRNA binding2.09E-03
74GO:0031072: heat shock protein binding2.38E-03
75GO:0008266: poly(U) RNA binding2.69E-03
76GO:0008236: serine-type peptidase activity2.79E-03
77GO:0003924: GTPase activity2.89E-03
78GO:0048487: beta-tubulin binding2.95E-03
79GO:0004792: thiosulfate sulfurtransferase activity2.95E-03
80GO:0016656: monodehydroascorbate reductase (NADH) activity2.95E-03
81GO:0016628: oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor2.95E-03
82GO:0019201: nucleotide kinase activity2.95E-03
83GO:0004222: metalloendopeptidase activity3.38E-03
84GO:0009044: xylan 1,4-beta-xylosidase activity3.97E-03
85GO:0046556: alpha-L-arabinofuranosidase activity3.97E-03
86GO:0004659: prenyltransferase activity3.97E-03
87GO:0016279: protein-lysine N-methyltransferase activity3.97E-03
88GO:0016810: hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds3.97E-03
89GO:0045430: chalcone isomerase activity3.97E-03
90GO:0004045: aminoacyl-tRNA hydrolase activity3.97E-03
91GO:0004176: ATP-dependent peptidase activity4.53E-03
92GO:0045300: acyl-[acyl-carrier-protein] desaturase activity5.10E-03
93GO:0016773: phosphotransferase activity, alcohol group as acceptor5.10E-03
94GO:0003959: NADPH dehydrogenase activity5.10E-03
95GO:0030570: pectate lyase activity5.42E-03
96GO:0043621: protein self-association6.18E-03
97GO:0004556: alpha-amylase activity6.33E-03
98GO:0004366: glycerol-3-phosphate O-acyltransferase activity6.33E-03
99GO:0042578: phosphoric ester hydrolase activity6.33E-03
100GO:2001070: starch binding6.33E-03
101GO:0004526: ribonuclease P activity6.33E-03
102GO:0004616: phosphogluconate dehydrogenase (decarboxylating) activity7.65E-03
103GO:0016832: aldehyde-lyase activity7.65E-03
104GO:0004144: diacylglycerol O-acyltransferase activity7.65E-03
105GO:0004723: calcium-dependent protein serine/threonine phosphatase activity7.65E-03
106GO:0005261: cation channel activity7.65E-03
107GO:0051920: peroxiredoxin activity7.65E-03
108GO:0016853: isomerase activity8.04E-03
109GO:0003743: translation initiation factor activity8.22E-03
110GO:0009881: photoreceptor activity9.06E-03
111GO:0016491: oxidoreductase activity9.69E-03
112GO:0043022: ribosome binding1.06E-02
113GO:0004033: aldo-keto reductase (NADP) activity1.06E-02
114GO:0005337: nucleoside transmembrane transporter activity1.06E-02
115GO:0016209: antioxidant activity1.06E-02
116GO:0008312: 7S RNA binding1.06E-02
117GO:0032041: NAD-dependent histone deacetylase activity (H3-K14 specific)1.21E-02
118GO:0051082: unfolded protein binding1.29E-02
119GO:0016788: hydrolase activity, acting on ester bonds1.30E-02
120GO:0005381: iron ion transmembrane transporter activity1.55E-02
121GO:0016844: strictosidine synthase activity1.55E-02
122GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity1.76E-02
123GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen1.77E-02
124GO:0008559: xenobiotic-transporting ATPase activity1.92E-02
125GO:0044183: protein binding involved in protein folding1.92E-02
126GO:0004252: serine-type endopeptidase activity1.96E-02
127GO:0016614: oxidoreductase activity, acting on CH-OH group of donors2.04E-02
128GO:0003746: translation elongation factor activity2.24E-02
129GO:0004022: alcohol dehydrogenase (NAD) activity2.32E-02
130GO:0005315: inorganic phosphate transmembrane transporter activity2.32E-02
131GO:0015095: magnesium ion transmembrane transporter activity2.32E-02
132GO:0042973: glucan endo-1,3-beta-D-glucosidase activity2.53E-02
133GO:0008083: growth factor activity2.53E-02
134GO:0005509: calcium ion binding2.95E-02
135GO:0102336: 3-oxo-arachidoyl-CoA synthase activity2.96E-02
136GO:0102337: 3-oxo-cerotoyl-CoA synthase activity2.96E-02
137GO:0102338: 3-oxo-lignoceronyl-CoA synthase activity2.96E-02
138GO:0003729: mRNA binding3.08E-02
139GO:0051537: 2 iron, 2 sulfur cluster binding3.12E-02
140GO:0003714: transcription corepressor activity3.19E-02
141GO:0051536: iron-sulfur cluster binding3.19E-02
142GO:0004857: enzyme inhibitor activity3.19E-02
143GO:0004407: histone deacetylase activity3.19E-02
144GO:0015079: potassium ion transmembrane transporter activity3.42E-02
145GO:0042626: ATPase activity, coupled to transmembrane movement of substances3.47E-02
146GO:0033612: receptor serine/threonine kinase binding3.66E-02
147GO:0003899: DNA-directed 5'-3' RNA polymerase activity3.88E-02
148GO:0047262: polygalacturonate 4-alpha-galacturonosyltransferase activity3.90E-02
149GO:0022891: substrate-specific transmembrane transporter activity4.15E-02
150GO:0003723: RNA binding4.16E-02
151GO:0008514: organic anion transmembrane transporter activity4.41E-02
152GO:0003756: protein disulfide isomerase activity4.41E-02
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Gene type



Gene DE type