GO Enrichment Analysis of Co-expressed Genes with
AT4G38860
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0046460: neutral lipid biosynthetic process | 0.00E+00 |
| 2 | GO:0019379: sulfate assimilation, phosphoadenylyl sulfate reduction by phosphoadenylyl-sulfate reductase (thioredoxin) | 0.00E+00 |
| 3 | GO:0031116: positive regulation of microtubule polymerization | 0.00E+00 |
| 4 | GO:0043488: regulation of mRNA stability | 0.00E+00 |
| 5 | GO:0018131: oxazole or thiazole biosynthetic process | 0.00E+00 |
| 6 | GO:0007037: vacuolar phosphate transport | 0.00E+00 |
| 7 | GO:0042407: cristae formation | 0.00E+00 |
| 8 | GO:0040008: regulation of growth | 2.60E-05 |
| 9 | GO:0009658: chloroplast organization | 9.01E-05 |
| 10 | GO:0000476: maturation of 4.5S rRNA | 2.87E-04 |
| 11 | GO:0000967: rRNA 5'-end processing | 2.87E-04 |
| 12 | GO:0043266: regulation of potassium ion transport | 2.87E-04 |
| 13 | GO:0006659: phosphatidylserine biosynthetic process | 2.87E-04 |
| 14 | GO:2000021: regulation of ion homeostasis | 2.87E-04 |
| 15 | GO:1902458: positive regulation of stomatal opening | 2.87E-04 |
| 16 | GO:0000373: Group II intron splicing | 4.20E-04 |
| 17 | GO:1905011: transmembrane phosphate ion transport from cytosol to vacuole | 6.30E-04 |
| 18 | GO:0007154: cell communication | 6.30E-04 |
| 19 | GO:1900033: negative regulation of trichome patterning | 6.30E-04 |
| 20 | GO:1903426: regulation of reactive oxygen species biosynthetic process | 6.30E-04 |
| 21 | GO:0015804: neutral amino acid transport | 6.30E-04 |
| 22 | GO:0034470: ncRNA processing | 6.30E-04 |
| 23 | GO:0006423: cysteinyl-tRNA aminoacylation | 6.30E-04 |
| 24 | GO:0009684: indoleacetic acid biosynthetic process | 6.69E-04 |
| 25 | GO:0006415: translational termination | 6.69E-04 |
| 26 | GO:2000012: regulation of auxin polar transport | 8.67E-04 |
| 27 | GO:0006954: inflammatory response | 1.02E-03 |
| 28 | GO:0001578: microtubule bundle formation | 1.02E-03 |
| 29 | GO:0019419: sulfate reduction | 1.02E-03 |
| 30 | GO:0019344: cysteine biosynthetic process | 1.34E-03 |
| 31 | GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly | 1.46E-03 |
| 32 | GO:0043433: negative regulation of sequence-specific DNA binding transcription factor activity | 1.46E-03 |
| 33 | GO:0006164: purine nucleotide biosynthetic process | 1.46E-03 |
| 34 | GO:0007166: cell surface receptor signaling pathway | 1.61E-03 |
| 35 | GO:0006021: inositol biosynthetic process | 1.96E-03 |
| 36 | GO:0048629: trichome patterning | 1.96E-03 |
| 37 | GO:0051322: anaphase | 1.96E-03 |
| 38 | GO:0009765: photosynthesis, light harvesting | 1.96E-03 |
| 39 | GO:0022622: root system development | 1.96E-03 |
| 40 | GO:0007020: microtubule nucleation | 1.96E-03 |
| 41 | GO:0009585: red, far-red light phototransduction | 2.17E-03 |
| 42 | GO:0009789: positive regulation of abscisic acid-activated signaling pathway | 2.27E-03 |
| 43 | GO:0046785: microtubule polymerization | 2.50E-03 |
| 44 | GO:0045038: protein import into chloroplast thylakoid membrane | 2.50E-03 |
| 45 | GO:0016123: xanthophyll biosynthetic process | 2.50E-03 |
| 46 | GO:0016120: carotene biosynthetic process | 2.50E-03 |
| 47 | GO:0009958: positive gravitropism | 2.64E-03 |
| 48 | GO:0010264: myo-inositol hexakisphosphate biosynthetic process | 3.08E-03 |
| 49 | GO:0016554: cytidine to uridine editing | 3.08E-03 |
| 50 | GO:0032973: amino acid export | 3.08E-03 |
| 51 | GO:0009228: thiamine biosynthetic process | 3.08E-03 |
| 52 | GO:0032502: developmental process | 3.48E-03 |
| 53 | GO:0042372: phylloquinone biosynthetic process | 3.71E-03 |
| 54 | GO:0080086: stamen filament development | 3.71E-03 |
| 55 | GO:0034389: lipid particle organization | 3.71E-03 |
| 56 | GO:0006468: protein phosphorylation | 4.23E-03 |
| 57 | GO:0032880: regulation of protein localization | 4.38E-03 |
| 58 | GO:0009395: phospholipid catabolic process | 4.38E-03 |
| 59 | GO:0048528: post-embryonic root development | 4.38E-03 |
| 60 | GO:0043090: amino acid import | 4.38E-03 |
| 61 | GO:0006402: mRNA catabolic process | 5.08E-03 |
| 62 | GO:0010078: maintenance of root meristem identity | 5.08E-03 |
| 63 | GO:2000070: regulation of response to water deprivation | 5.08E-03 |
| 64 | GO:0000105: histidine biosynthetic process | 5.08E-03 |
| 65 | GO:0042255: ribosome assembly | 5.08E-03 |
| 66 | GO:0046620: regulation of organ growth | 5.08E-03 |
| 67 | GO:0006353: DNA-templated transcription, termination | 5.08E-03 |
| 68 | GO:0070413: trehalose metabolism in response to stress | 5.08E-03 |
| 69 | GO:0009627: systemic acquired resistance | 5.25E-03 |
| 70 | GO:0009733: response to auxin | 5.72E-03 |
| 71 | GO:0032544: plastid translation | 5.82E-03 |
| 72 | GO:0043562: cellular response to nitrogen levels | 5.82E-03 |
| 73 | GO:0006002: fructose 6-phosphate metabolic process | 5.82E-03 |
| 74 | GO:0006413: translational initiation | 6.23E-03 |
| 75 | GO:0080144: amino acid homeostasis | 6.60E-03 |
| 76 | GO:0006783: heme biosynthetic process | 6.60E-03 |
| 77 | GO:0006189: 'de novo' IMP biosynthetic process | 6.60E-03 |
| 78 | GO:0019432: triglyceride biosynthetic process | 6.60E-03 |
| 79 | GO:0048527: lateral root development | 7.10E-03 |
| 80 | GO:0071577: zinc II ion transmembrane transport | 7.41E-03 |
| 81 | GO:0009638: phototropism | 7.41E-03 |
| 82 | GO:0043067: regulation of programmed cell death | 7.41E-03 |
| 83 | GO:0010018: far-red light signaling pathway | 7.41E-03 |
| 84 | GO:1900865: chloroplast RNA modification | 7.41E-03 |
| 85 | GO:0006535: cysteine biosynthetic process from serine | 8.26E-03 |
| 86 | GO:0000103: sulfate assimilation | 8.26E-03 |
| 87 | GO:0045036: protein targeting to chloroplast | 8.26E-03 |
| 88 | GO:0009641: shade avoidance | 8.26E-03 |
| 89 | GO:0006949: syncytium formation | 8.26E-03 |
| 90 | GO:0006782: protoporphyrinogen IX biosynthetic process | 8.26E-03 |
| 91 | GO:1903507: negative regulation of nucleic acid-templated transcription | 9.14E-03 |
| 92 | GO:0009773: photosynthetic electron transport in photosystem I | 9.14E-03 |
| 93 | GO:0006631: fatty acid metabolic process | 9.26E-03 |
| 94 | GO:0045037: protein import into chloroplast stroma | 1.01E-02 |
| 95 | GO:0009734: auxin-activated signaling pathway | 1.08E-02 |
| 96 | GO:0010628: positive regulation of gene expression | 1.10E-02 |
| 97 | GO:0010588: cotyledon vascular tissue pattern formation | 1.10E-02 |
| 98 | GO:0010207: photosystem II assembly | 1.20E-02 |
| 99 | GO:0048467: gynoecium development | 1.20E-02 |
| 100 | GO:0071732: cellular response to nitric oxide | 1.30E-02 |
| 101 | GO:0010030: positive regulation of seed germination | 1.30E-02 |
| 102 | GO:0042753: positive regulation of circadian rhythm | 1.40E-02 |
| 103 | GO:0009833: plant-type primary cell wall biogenesis | 1.40E-02 |
| 104 | GO:0006071: glycerol metabolic process | 1.40E-02 |
| 105 | GO:0000162: tryptophan biosynthetic process | 1.40E-02 |
| 106 | GO:0005992: trehalose biosynthetic process | 1.51E-02 |
| 107 | GO:0007010: cytoskeleton organization | 1.51E-02 |
| 108 | GO:0043622: cortical microtubule organization | 1.62E-02 |
| 109 | GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway | 1.63E-02 |
| 110 | GO:0003333: amino acid transmembrane transport | 1.73E-02 |
| 111 | GO:0048511: rhythmic process | 1.73E-02 |
| 112 | GO:2000022: regulation of jasmonic acid mediated signaling pathway | 1.85E-02 |
| 113 | GO:0031348: negative regulation of defense response | 1.85E-02 |
| 114 | GO:0006730: one-carbon metabolic process | 1.85E-02 |
| 115 | GO:0010082: regulation of root meristem growth | 1.96E-02 |
| 116 | GO:0071369: cellular response to ethylene stimulus | 1.96E-02 |
| 117 | GO:0009831: plant-type cell wall modification involved in multidimensional cell growth | 1.96E-02 |
| 118 | GO:0009306: protein secretion | 2.08E-02 |
| 119 | GO:0010214: seed coat development | 2.08E-02 |
| 120 | GO:0008284: positive regulation of cell proliferation | 2.21E-02 |
| 121 | GO:0016117: carotenoid biosynthetic process | 2.21E-02 |
| 122 | GO:0000271: polysaccharide biosynthetic process | 2.33E-02 |
| 123 | GO:0080022: primary root development | 2.33E-02 |
| 124 | GO:0008033: tRNA processing | 2.33E-02 |
| 125 | GO:0010087: phloem or xylem histogenesis | 2.33E-02 |
| 126 | GO:0042631: cellular response to water deprivation | 2.33E-02 |
| 127 | GO:0010197: polar nucleus fusion | 2.46E-02 |
| 128 | GO:0045489: pectin biosynthetic process | 2.46E-02 |
| 129 | GO:0016042: lipid catabolic process | 2.46E-02 |
| 130 | GO:0042752: regulation of circadian rhythm | 2.59E-02 |
| 131 | GO:0048825: cotyledon development | 2.72E-02 |
| 132 | GO:0008654: phospholipid biosynthetic process | 2.72E-02 |
| 133 | GO:0009851: auxin biosynthetic process | 2.72E-02 |
| 134 | GO:0009791: post-embryonic development | 2.72E-02 |
| 135 | GO:0016032: viral process | 3.00E-02 |
| 136 | GO:0071281: cellular response to iron ion | 3.13E-02 |
| 137 | GO:0009639: response to red or far red light | 3.28E-02 |
| 138 | GO:0009828: plant-type cell wall loosening | 3.28E-02 |
| 139 | GO:0045490: pectin catabolic process | 3.35E-02 |
| 140 | GO:0000910: cytokinesis | 3.57E-02 |
| 141 | GO:0010027: thylakoid membrane organization | 3.72E-02 |
| 142 | GO:0008380: RNA splicing | 3.99E-02 |
| 143 | GO:0006974: cellular response to DNA damage stimulus | 4.02E-02 |
| 144 | GO:0015995: chlorophyll biosynthetic process | 4.17E-02 |
| 145 | GO:0030244: cellulose biosynthetic process | 4.49E-02 |
| 146 | GO:0009832: plant-type cell wall biogenesis | 4.65E-02 |
| 147 | GO:0006499: N-terminal protein myristoylation | 4.81E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0043864: indoleacetamide hydrolase activity | 0.00E+00 |
| 2 | GO:0008756: o-succinylbenzoate-CoA ligase activity | 0.00E+00 |
| 3 | GO:0004056: argininosuccinate lyase activity | 0.00E+00 |
| 4 | GO:0003949: 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide isomerase activity | 0.00E+00 |
| 5 | GO:0045435: lycopene epsilon cyclase activity | 0.00E+00 |
| 6 | GO:0004639: phosphoribosylaminoimidazolesuccinocarboxamide synthase activity | 0.00E+00 |
| 7 | GO:0004675: transmembrane receptor protein serine/threonine kinase activity | 2.07E-04 |
| 8 | GO:0030785: [ribulose-bisphosphate carboxylase]-lysine N-methyltransferase activity | 2.87E-04 |
| 9 | GO:0050139: nicotinate-N-glucosyltransferase activity | 2.87E-04 |
| 10 | GO:0004853: uroporphyrinogen decarboxylase activity | 2.87E-04 |
| 11 | GO:0003747: translation release factor activity | 4.20E-04 |
| 12 | GO:0009973: adenylyl-sulfate reductase activity | 6.30E-04 |
| 13 | GO:0080097: L-tryptophan:pyruvate aminotransferase activity | 6.30E-04 |
| 14 | GO:0004604: phosphoadenylyl-sulfate reductase (thioredoxin) activity | 6.30E-04 |
| 15 | GO:0015172: acidic amino acid transmembrane transporter activity | 6.30E-04 |
| 16 | GO:0050017: L-3-cyanoalanine synthase activity | 6.30E-04 |
| 17 | GO:0050362: L-tryptophan:2-oxoglutarate aminotransferase activity | 6.30E-04 |
| 18 | GO:0009977: proton motive force dependent protein transmembrane transporter activity | 6.30E-04 |
| 19 | GO:0033741: adenylyl-sulfate reductase (glutathione) activity | 6.30E-04 |
| 20 | GO:0004817: cysteine-tRNA ligase activity | 6.30E-04 |
| 21 | GO:0004512: inositol-3-phosphate synthase activity | 6.30E-04 |
| 22 | GO:0070330: aromatase activity | 1.02E-03 |
| 23 | GO:0003993: acid phosphatase activity | 1.14E-03 |
| 24 | GO:0005528: FK506 binding | 1.34E-03 |
| 25 | GO:0016149: translation release factor activity, codon specific | 1.46E-03 |
| 26 | GO:0015175: neutral amino acid transmembrane transporter activity | 1.46E-03 |
| 27 | GO:0030570: pectate lyase activity | 1.93E-03 |
| 28 | GO:0016810: hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds | 1.96E-03 |
| 29 | GO:0004045: aminoacyl-tRNA hydrolase activity | 1.96E-03 |
| 30 | GO:0018685: alkane 1-monooxygenase activity | 2.50E-03 |
| 31 | GO:0016846: carbon-sulfur lyase activity | 2.50E-03 |
| 32 | GO:0004040: amidase activity | 2.50E-03 |
| 33 | GO:0016788: hydrolase activity, acting on ester bonds | 2.64E-03 |
| 34 | GO:0016208: AMP binding | 3.08E-03 |
| 35 | GO:0042578: phosphoric ester hydrolase activity | 3.08E-03 |
| 36 | GO:0003730: mRNA 3'-UTR binding | 3.71E-03 |
| 37 | GO:0004144: diacylglycerol O-acyltransferase activity | 3.71E-03 |
| 38 | GO:0004723: calcium-dependent protein serine/threonine phosphatase activity | 3.71E-03 |
| 39 | GO:0004124: cysteine synthase activity | 3.71E-03 |
| 40 | GO:0008195: phosphatidate phosphatase activity | 3.71E-03 |
| 41 | GO:0016832: aldehyde-lyase activity | 3.71E-03 |
| 42 | GO:0003872: 6-phosphofructokinase activity | 4.38E-03 |
| 43 | GO:0016829: lyase activity | 5.00E-03 |
| 44 | GO:0043022: ribosome binding | 5.08E-03 |
| 45 | GO:0016614: oxidoreductase activity, acting on CH-OH group of donors | 7.10E-03 |
| 46 | GO:0008017: microtubule binding | 7.22E-03 |
| 47 | GO:0004805: trehalose-phosphatase activity | 8.26E-03 |
| 48 | GO:0004713: protein tyrosine kinase activity | 8.26E-03 |
| 49 | GO:0003743: translation initiation factor activity | 8.31E-03 |
| 50 | GO:0047372: acylglycerol lipase activity | 9.14E-03 |
| 51 | GO:0004089: carbonate dehydratase activity | 1.10E-02 |
| 52 | GO:0003755: peptidyl-prolyl cis-trans isomerase activity | 1.17E-02 |
| 53 | GO:0008083: growth factor activity | 1.20E-02 |
| 54 | GO:0042973: glucan endo-1,3-beta-D-glucosidase activity | 1.20E-02 |
| 55 | GO:0005385: zinc ion transmembrane transporter activity | 1.51E-02 |
| 56 | GO:0015171: amino acid transmembrane transporter activity | 1.51E-02 |
| 57 | GO:0003714: transcription corepressor activity | 1.51E-02 |
| 58 | GO:0008324: cation transmembrane transporter activity | 1.62E-02 |
| 59 | GO:0051087: chaperone binding | 1.62E-02 |
| 60 | GO:0004176: ATP-dependent peptidase activity | 1.73E-02 |
| 61 | GO:0052689: carboxylic ester hydrolase activity | 1.78E-02 |
| 62 | GO:0047262: polygalacturonate 4-alpha-galacturonosyltransferase activity | 1.85E-02 |
| 63 | GO:0016760: cellulose synthase (UDP-forming) activity | 1.96E-02 |
| 64 | GO:0003727: single-stranded RNA binding | 2.08E-02 |
| 65 | GO:0008536: Ran GTPase binding | 2.46E-02 |
| 66 | GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen | 2.49E-02 |
| 67 | GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor | 3.13E-02 |
| 68 | GO:0005525: GTP binding | 3.21E-02 |
| 69 | GO:0016759: cellulose synthase activity | 3.28E-02 |
| 70 | GO:0016791: phosphatase activity | 3.28E-02 |
| 71 | GO:0008237: metallopeptidase activity | 3.42E-02 |
| 72 | GO:0030247: polysaccharide binding | 4.17E-02 |
| 73 | GO:0015238: drug transmembrane transporter activity | 4.65E-02 |