co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT4G38825

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0010323: negative regulation of isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway	0.00E+00
2	GO:0045014: negative regulation of transcription by glucose	0.00E+00
3	GO:0071951: conversion of methionyl-tRNA to N-formyl-methionyl-tRNA	0.00E+00
4	GO:0090627: plant epidermal cell differentiation	0.00E+00
5	GO:0090322: regulation of superoxide metabolic process	0.00E+00
6	GO:1901528: hydrogen peroxide mediated signaling pathway involved in stomatal movement	0.00E+00
7	GO:0080127: fruit septum development	0.00E+00
8	GO:0046486: glycerolipid metabolic process	0.00E+00
9	GO:0019988: charged-tRNA amino acid modification	0.00E+00
10	GO:0046620: regulation of organ growth	7.70E-06
11	GO:0009733: response to auxin	1.67E-04
12	GO:0009734: auxin-activated signaling pathway	1.81E-04
13	GO:0009926: auxin polar transport	2.20E-04
14	GO:0006401: RNA catabolic process	2.36E-04
15	GO:0033206: meiotic cytokinesis	2.97E-04
16	GO:0006949: syncytium formation	6.09E-04
17	GO:0048829: root cap development	6.09E-04
18	GO:1901529: positive regulation of anion channel activity	6.50E-04
19	GO:0048731: system development	6.50E-04
20	GO:0006650: glycerophospholipid metabolic process	6.50E-04
21	GO:2000071: regulation of defense response by callose deposition	6.50E-04
22	GO:1900033: negative regulation of trichome patterning	6.50E-04
23	GO:0080009: mRNA methylation	6.50E-04
24	GO:0010588: cotyledon vascular tissue pattern formation	9.08E-04
25	GO:1901527: abscisic acid-activated signaling pathway involved in stomatal movement	1.05E-03
26	GO:0046168: glycerol-3-phosphate catabolic process	1.05E-03
27	GO:0006518: peptide metabolic process	1.05E-03
28	GO:0080147: root hair cell development	1.40E-03
29	GO:0033169: histone H3-K9 demethylation	1.51E-03
30	GO:0009102: biotin biosynthetic process	1.51E-03
31	GO:0009152: purine ribonucleotide biosynthetic process	1.51E-03
32	GO:0007276: gamete generation	1.51E-03
33	GO:0006072: glycerol-3-phosphate metabolic process	1.51E-03
34	GO:0045017: glycerolipid biosynthetic process	1.51E-03
35	GO:0003333: amino acid transmembrane transport	1.70E-03
36	GO:2000022: regulation of jasmonic acid mediated signaling pathway	1.86E-03
37	GO:0006221: pyrimidine nucleotide biosynthetic process	2.02E-03
38	GO:0009956: radial pattern formation	2.02E-03
39	GO:0006808: regulation of nitrogen utilization	2.02E-03
40	GO:0048629: trichome patterning	2.02E-03
41	GO:0006284: base-excision repair	2.20E-03
42	GO:0042127: regulation of cell proliferation	2.20E-03
43	GO:0006364: rRNA processing	2.31E-03
44	GO:0008033: tRNA processing	2.57E-03
45	GO:0016123: xanthophyll biosynthetic process	2.58E-03
46	GO:0016120: carotene biosynthetic process	2.58E-03
47	GO:0045487: gibberellin catabolic process	2.58E-03
48	GO:0080110: sporopollenin biosynthetic process	2.58E-03
49	GO:0016131: brassinosteroid metabolic process	2.58E-03
50	GO:0010305: leaf vascular tissue pattern formation	2.77E-03
51	GO:0009658: chloroplast organization	2.77E-03
52	GO:0009959: negative gravitropism	3.19E-03
53	GO:0016554: cytidine to uridine editing	3.19E-03
54	GO:0009913: epidermal cell differentiation	3.19E-03
55	GO:0042793: transcription from plastid promoter	3.19E-03
56	GO:0003006: developmental process involved in reproduction	3.19E-03
57	GO:0009643: photosynthetic acclimation	3.19E-03
58	GO:0080156: mitochondrial mRNA modification	3.42E-03
59	GO:0000079: regulation of cyclin-dependent protein serine/threonine kinase activity	3.84E-03
60	GO:0010310: regulation of hydrogen peroxide metabolic process	3.84E-03
61	GO:2000033: regulation of seed dormancy process	3.84E-03
62	GO:0009828: plant-type cell wall loosening	4.15E-03
63	GO:0010098: suspensor development	4.53E-03
64	GO:0015937: coenzyme A biosynthetic process	4.53E-03
65	GO:0010103: stomatal complex morphogenesis	4.53E-03
66	GO:0009864: induced systemic resistance, jasmonic acid mediated signaling pathway	4.53E-03
67	GO:0010374: stomatal complex development	4.53E-03
68	GO:0009416: response to light stimulus	4.63E-03
69	GO:0006468: protein phosphorylation	4.89E-03
70	GO:0009787: regulation of abscisic acid-activated signaling pathway	5.26E-03
71	GO:0042255: ribosome assembly	5.26E-03
72	GO:0006353: DNA-templated transcription, termination	5.26E-03
73	GO:0009938: negative regulation of gibberellic acid mediated signaling pathway	5.26E-03
74	GO:0006402: mRNA catabolic process	5.26E-03
75	GO:0010492: maintenance of shoot apical meristem identity	5.26E-03
76	GO:0015995: chlorophyll biosynthetic process	5.82E-03
77	GO:0007186: G-protein coupled receptor signaling pathway	6.03E-03
78	GO:0010233: phloem transport	6.03E-03
79	GO:0010052: guard cell differentiation	6.03E-03
80	GO:0007389: pattern specification process	6.03E-03
81	GO:0032259: methylation	6.50E-03
82	GO:0048507: meristem development	6.83E-03
83	GO:0048589: developmental growth	6.83E-03
84	GO:0040008: regulation of growth	6.85E-03
85	GO:0010218: response to far red light	7.11E-03
86	GO:1900865: chloroplast RNA modification	7.67E-03
87	GO:0031425: chloroplast RNA processing	7.67E-03
88	GO:0006865: amino acid transport	7.81E-03
89	GO:0009867: jasmonic acid mediated signaling pathway	8.18E-03
90	GO:0006782: protoporphyrinogen IX biosynthetic process	8.55E-03
91	GO:0006535: cysteine biosynthetic process from serine	8.55E-03
92	GO:0030001: metal ion transport	9.33E-03
93	GO:0009682: induced systemic resistance	9.46E-03
94	GO:1903507: negative regulation of nucleic acid-templated transcription	9.46E-03
95	GO:0009750: response to fructose	9.46E-03
96	GO:0010216: maintenance of DNA methylation	9.46E-03
97	GO:0012501: programmed cell death	1.04E-02
98	GO:0010582: floral meristem determinacy	1.04E-02
99	GO:0010152: pollen maturation	1.04E-02
100	GO:0010102: lateral root morphogenesis	1.14E-02
101	GO:0046274: lignin catabolic process	1.14E-02
102	GO:0048467: gynoecium development	1.24E-02
103	GO:0010020: chloroplast fission	1.24E-02
104	GO:0009933: meristem structural organization	1.24E-02
105	GO:0006270: DNA replication initiation	1.24E-02
106	GO:0009887: animal organ morphogenesis	1.24E-02
107	GO:0010540: basipetal auxin transport	1.24E-02
108	GO:0031347: regulation of defense response	1.28E-02
109	GO:0009664: plant-type cell wall organization	1.33E-02
110	GO:0009825: multidimensional cell growth	1.34E-02
111	GO:0006636: unsaturated fatty acid biosynthetic process	1.45E-02
112	GO:0019344: cysteine biosynthetic process	1.56E-02
113	GO:0009863: salicylic acid mediated signaling pathway	1.56E-02
114	GO:0010187: negative regulation of seed germination	1.56E-02
115	GO:2000377: regulation of reactive oxygen species metabolic process	1.56E-02
116	GO:0019953: sexual reproduction	1.68E-02
117	GO:0006874: cellular calcium ion homeostasis	1.68E-02
118	GO:0006825: copper ion transport	1.68E-02
119	GO:0048367: shoot system development	1.75E-02
120	GO:0030245: cellulose catabolic process	1.91E-02
121	GO:0009740: gibberellic acid mediated signaling pathway	1.92E-02
122	GO:0009831: plant-type cell wall modification involved in multidimensional cell growth	2.03E-02
123	GO:0009686: gibberellin biosynthetic process	2.03E-02
124	GO:0009624: response to nematode	2.04E-02
125	GO:0010584: pollen exine formation	2.16E-02
126	GO:0048443: stamen development	2.16E-02
127	GO:0051726: regulation of cell cycle	2.16E-02
128	GO:0080022: primary root development	2.42E-02
129	GO:0010087: phloem or xylem histogenesis	2.42E-02
130	GO:0010118: stomatal movement	2.42E-02
131	GO:0010268: brassinosteroid homeostasis	2.55E-02
132	GO:0009741: response to brassinosteroid	2.55E-02
133	GO:0009058: biosynthetic process	2.69E-02
134	GO:0009845: seed germination	2.76E-02
135	GO:0048825: cotyledon development	2.82E-02
136	GO:0009749: response to glucose	2.82E-02
137	GO:0008654: phospholipid biosynthetic process	2.82E-02
138	GO:0006397: mRNA processing	2.87E-02
139	GO:0071554: cell wall organization or biogenesis	2.96E-02
140	GO:0002229: defense response to oomycetes	2.96E-02
141	GO:0010583: response to cyclopentenone	3.10E-02
142	GO:0030163: protein catabolic process	3.25E-02
143	GO:0019760: glucosinolate metabolic process	3.39E-02
144	GO:0009639: response to red or far red light	3.39E-02
145	GO:0006464: cellular protein modification process	3.39E-02
146	GO:0045490: pectin catabolic process	3.52E-02
147	GO:0006355: regulation of transcription, DNA-templated	3.77E-02
148	GO:0009739: response to gibberellin	3.93E-02
149	GO:0010029: regulation of seed germination	4.00E-02
150	GO:0009627: systemic acquired resistance	4.16E-02
151	GO:0016311: dephosphorylation	4.48E-02
152	GO:0048481: plant ovule development	4.65E-02
153	GO:0006811: ion transport	4.98E-02

Rank	GO Term	Adjusted P value
1	GO:0043399: tRNA A64-2'-O-ribosylphosphate transferase activity	0.00E+00
2	GO:0016763: transferase activity, transferring pentosyl groups	0.00E+00
3	GO:0008859: exoribonuclease II activity	0.00E+00
4	GO:0004141: dethiobiotin synthase activity	0.00E+00
5	GO:0004479: methionyl-tRNA formyltransferase activity	0.00E+00
6	GO:0004835: tubulin-tyrosine ligase activity	0.00E+00
7	GO:0004015: adenosylmethionine-8-amino-7-oxononanoate transaminase activity	0.00E+00
8	GO:0004632: phosphopantothenate--cysteine ligase activity	2.97E-04
9	GO:0016422: mRNA (2'-O-methyladenosine-N6-)-methyltransferase activity	2.97E-04
10	GO:0008395: steroid hydroxylase activity	2.97E-04
11	GO:0016901: oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor	2.97E-04
12	GO:0004654: polyribonucleotide nucleotidyltransferase activity	2.97E-04
13	GO:0004016: adenylate cyclase activity	2.97E-04
14	GO:0004109: coproporphyrinogen oxidase activity	6.50E-04
15	GO:0000179: rRNA (adenine-N6,N6-)-dimethyltransferase activity	6.50E-04
16	GO:0032454: histone demethylase activity (H3-K9 specific)	6.50E-04
17	GO:0042389: omega-3 fatty acid desaturase activity	6.50E-04
18	GO:0045543: gibberellin 2-beta-dioxygenase activity	6.50E-04
19	GO:0004809: tRNA (guanine-N2-)-methyltransferase activity	6.50E-04
20	GO:0003723: RNA binding	8.89E-04
21	GO:0000175: 3'-5'-exoribonuclease activity	9.08E-04
22	GO:0016742: hydroxymethyl-, formyl- and related transferase activity	1.05E-03
23	GO:0004367: glycerol-3-phosphate dehydrogenase [NAD+] activity	1.05E-03
24	GO:0008864: formyltetrahydrofolate deformylase activity	1.05E-03
25	GO:0052634: C-19 gibberellin 2-beta-dioxygenase activity	1.51E-03
26	GO:0009041: uridylate kinase activity	1.51E-03
27	GO:0010011: auxin binding	2.02E-03
28	GO:0019104: DNA N-glycosylase activity	2.02E-03
29	GO:0010328: auxin influx transmembrane transporter activity	2.02E-03
30	GO:0004930: G-protein coupled receptor activity	2.02E-03
31	GO:0030570: pectate lyase activity	2.02E-03
32	GO:0008725: DNA-3-methyladenine glycosylase activity	2.58E-03
33	GO:0003688: DNA replication origin binding	3.19E-03
34	GO:0003700: transcription factor activity, sequence-specific DNA binding	3.76E-03
35	GO:0004124: cysteine synthase activity	3.84E-03
36	GO:0000977: RNA polymerase II regulatory region sequence-specific DNA binding	5.68E-03
37	GO:0016717: oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water	6.03E-03
38	GO:0000989: transcription factor activity, transcription factor binding	6.83E-03
39	GO:0031490: chromatin DNA binding	7.67E-03
40	GO:0004519: endonuclease activity	7.89E-03
41	GO:0003993: acid phosphatase activity	8.56E-03
42	GO:0052716: hydroquinone:oxygen oxidoreductase activity	1.04E-02
43	GO:0000976: transcription regulatory region sequence-specific DNA binding	1.04E-02
44	GO:0003725: double-stranded RNA binding	1.14E-02
45	GO:0015293: symporter activity	1.19E-02
46	GO:0008168: methyltransferase activity	1.21E-02
47	GO:0005217: intracellular ligand-gated ion channel activity	1.34E-02
48	GO:0004970: ionotropic glutamate receptor activity	1.34E-02
49	GO:0004190: aspartic-type endopeptidase activity	1.34E-02
50	GO:0003714: transcription corepressor activity	1.56E-02
51	GO:0015171: amino acid transmembrane transporter activity	1.58E-02
52	GO:0004540: ribonuclease activity	1.79E-02
53	GO:0016874: ligase activity	1.92E-02
54	GO:0004674: protein serine/threonine kinase activity	1.98E-02
55	GO:0008810: cellulase activity	2.03E-02
56	GO:0003727: single-stranded RNA binding	2.16E-02
57	GO:0005102: receptor binding	2.29E-02
58	GO:0016538: cyclin-dependent protein serine/threonine kinase regulator activity	2.55E-02
59	GO:0001085: RNA polymerase II transcription factor binding	2.55E-02
60	GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	2.62E-02
61	GO:0010181: FMN binding	2.68E-02
62	GO:0050662: coenzyme binding	2.68E-02
63	GO:0019901: protein kinase binding	2.82E-02
64	GO:0030170: pyridoxal phosphate binding	2.83E-02
65	GO:0048038: quinone binding	2.96E-02
66	GO:0004672: protein kinase activity	3.02E-02
67	GO:0016722: oxidoreductase activity, oxidizing metal ions	3.55E-02
68	GO:0005200: structural constituent of cytoskeleton	3.55E-02
69	GO:0016413: O-acetyltransferase activity	3.70E-02
70	GO:0016301: kinase activity	4.08E-02
71	GO:0008757: S-adenosylmethionine-dependent methyltransferase activity	4.48E-02
72	GO:0005096: GTPase activator activity	4.81E-02
73	GO:0043565: sequence-specific DNA binding	4.85E-02
74	GO:0004222: metalloendopeptidase activity	4.98E-02
75	GO:0004693: cyclin-dependent protein serine/threonine kinase activity	4.98E-02