Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT4G38770

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0090706: specification of plant organ position0.00E+00
2GO:0017038: protein import0.00E+00
3GO:0070681: glutaminyl-tRNAGln biosynthesis via transamidation0.00E+00
4GO:0090279: regulation of calcium ion import0.00E+00
5GO:0090470: shoot organ boundary specification0.00E+00
6GO:0031116: positive regulation of microtubule polymerization0.00E+00
7GO:0007037: vacuolar phosphate transport0.00E+00
8GO:0006428: isoleucyl-tRNA aminoacylation0.00E+00
9GO:0008618: 7-methylguanosine metabolic process0.00E+00
10GO:1903508: positive regulation of nucleic acid-templated transcription0.00E+00
11GO:0071474: cellular hyperosmotic response0.00E+00
12GO:0052865: 1-deoxy-D-xylulose 5-phosphate biosynthetic process0.00E+00
13GO:0051484: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway involved in terpenoid biosynthetic process0.00E+00
14GO:1902458: positive regulation of stomatal opening0.00E+00
15GO:0036265: RNA (guanine-N7)-methylation0.00E+00
16GO:0015995: chlorophyll biosynthetic process1.26E-07
17GO:0045038: protein import into chloroplast thylakoid membrane8.38E-07
18GO:1903426: regulation of reactive oxygen species biosynthetic process3.71E-06
19GO:0006021: inositol biosynthetic process5.37E-05
20GO:0010143: cutin biosynthetic process5.88E-05
21GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway1.23E-04
22GO:0030488: tRNA methylation1.69E-04
23GO:0009395: phospholipid catabolic process2.21E-04
24GO:2000070: regulation of response to water deprivation2.80E-04
25GO:0010362: negative regulation of anion channel activity by blue light2.84E-04
26GO:0015969: guanosine tetraphosphate metabolic process2.84E-04
27GO:0031426: polycistronic mRNA processing2.84E-04
28GO:0000481: maturation of 5S rRNA2.84E-04
29GO:0006659: phosphatidylserine biosynthetic process2.84E-04
30GO:0042547: cell wall modification involved in multidimensional cell growth2.84E-04
31GO:0034337: RNA folding2.84E-04
32GO:0005991: trehalose metabolic process2.84E-04
33GO:0010450: inflorescence meristem growth2.84E-04
34GO:0010206: photosystem II repair4.15E-04
35GO:0006782: protoporphyrinogen IX biosynthetic process5.73E-04
36GO:1905011: transmembrane phosphate ion transport from cytosol to vacuole6.25E-04
37GO:0010115: regulation of abscisic acid biosynthetic process6.25E-04
38GO:0007154: cell communication6.25E-04
39GO:0090342: regulation of cell aging6.25E-04
40GO:1900033: negative regulation of trichome patterning6.25E-04
41GO:0034755: iron ion transmembrane transport6.25E-04
42GO:0006435: threonyl-tRNA aminoacylation6.25E-04
43GO:0010155: regulation of proton transport6.25E-04
44GO:0015804: neutral amino acid transport6.25E-04
45GO:0051262: protein tetramerization6.25E-04
46GO:0009627: systemic acquired resistance6.53E-04
47GO:0009684: indoleacetic acid biosynthetic process6.61E-04
48GO:0016024: CDP-diacylglycerol biosynthetic process7.56E-04
49GO:0010207: photosystem II assembly9.62E-04
50GO:0033591: response to L-ascorbic acid1.01E-03
51GO:0080055: low-affinity nitrate transport1.01E-03
52GO:0001578: microtubule bundle formation1.01E-03
53GO:0045493: xylan catabolic process1.01E-03
54GO:0045165: cell fate commitment1.01E-03
55GO:0006631: fatty acid metabolic process1.32E-03
56GO:0010239: chloroplast mRNA processing1.45E-03
57GO:0009647: skotomorphogenesis1.45E-03
58GO:0006424: glutamyl-tRNA aminoacylation1.45E-03
59GO:0043433: negative regulation of sequence-specific DNA binding transcription factor activity1.45E-03
60GO:0006168: adenine salvage1.45E-03
61GO:0006164: purine nucleotide biosynthetic process1.45E-03
62GO:0010371: regulation of gibberellin biosynthetic process1.45E-03
63GO:0006166: purine ribonucleoside salvage1.45E-03
64GO:0009102: biotin biosynthetic process1.45E-03
65GO:0051322: anaphase1.94E-03
66GO:0019464: glycine decarboxylation via glycine cleavage system1.94E-03
67GO:0009765: photosynthesis, light harvesting1.94E-03
68GO:2000306: positive regulation of photomorphogenesis1.94E-03
69GO:0006546: glycine catabolic process1.94E-03
70GO:0007020: microtubule nucleation1.94E-03
71GO:0048629: trichome patterning1.94E-03
72GO:0010109: regulation of photosynthesis1.94E-03
73GO:0010158: abaxial cell fate specification2.48E-03
74GO:0006465: signal peptide processing2.48E-03
75GO:0046785: microtubule polymerization2.48E-03
76GO:0032543: mitochondrial translation2.48E-03
77GO:0016120: carotene biosynthetic process2.48E-03
78GO:0009904: chloroplast accumulation movement2.48E-03
79GO:1902183: regulation of shoot apical meristem development2.48E-03
80GO:0016123: xanthophyll biosynthetic process2.48E-03
81GO:0044209: AMP salvage2.48E-03
82GO:0010182: sugar mediated signaling pathway2.61E-03
83GO:0007018: microtubule-based movement2.80E-03
84GO:0009791: post-embryonic development3.01E-03
85GO:0006655: phosphatidylglycerol biosynthetic process3.06E-03
86GO:0048831: regulation of shoot system development3.06E-03
87GO:0045962: positive regulation of development, heterochronic3.06E-03
88GO:0009228: thiamine biosynthetic process3.06E-03
89GO:0046855: inositol phosphate dephosphorylation3.06E-03
90GO:0010264: myo-inositol hexakisphosphate biosynthetic process3.06E-03
91GO:0010583: response to cyclopentenone3.43E-03
92GO:0009955: adaxial/abaxial pattern specification3.68E-03
93GO:0042372: phylloquinone biosynthetic process3.68E-03
94GO:0009903: chloroplast avoidance movement3.68E-03
95GO:1901259: chloroplast rRNA processing3.68E-03
96GO:0010310: regulation of hydrogen peroxide metabolic process3.68E-03
97GO:0009416: response to light stimulus4.15E-03
98GO:0048528: post-embryonic root development4.34E-03
99GO:0006400: tRNA modification4.34E-03
100GO:0007155: cell adhesion5.03E-03
101GO:0006605: protein targeting5.03E-03
102GO:0010078: maintenance of root meristem identity5.03E-03
103GO:0032508: DNA duplex unwinding5.03E-03
104GO:0070413: trehalose metabolism in response to stress5.03E-03
105GO:0052543: callose deposition in cell wall5.03E-03
106GO:0016559: peroxisome fission5.03E-03
107GO:0022900: electron transport chain5.77E-03
108GO:0015996: chlorophyll catabolic process5.77E-03
109GO:0007186: G-protein coupled receptor signaling pathway5.77E-03
110GO:0032544: plastid translation5.77E-03
111GO:0043562: cellular response to nitrogen levels5.77E-03
112GO:0010093: specification of floral organ identity5.77E-03
113GO:0016042: lipid catabolic process6.05E-03
114GO:0018298: protein-chromophore linkage6.06E-03
115GO:2000024: regulation of leaf development6.54E-03
116GO:0006783: heme biosynthetic process6.54E-03
117GO:0048507: meristem development6.54E-03
118GO:0006189: 'de novo' IMP biosynthetic process6.54E-03
119GO:0006811: ion transport6.68E-03
120GO:0045490: pectin catabolic process6.71E-03
121GO:0007568: aging7.01E-03
122GO:0009638: phototropism7.35E-03
123GO:0006779: porphyrin-containing compound biosynthetic process7.35E-03
124GO:1900865: chloroplast RNA modification7.35E-03
125GO:0005982: starch metabolic process7.35E-03
126GO:0009637: response to blue light7.68E-03
127GO:0009409: response to cold8.04E-03
128GO:0010629: negative regulation of gene expression8.19E-03
129GO:0010215: cellulose microfibril organization8.19E-03
130GO:0019684: photosynthesis, light reaction9.06E-03
131GO:0009089: lysine biosynthetic process via diaminopimelate9.06E-03
132GO:0008285: negative regulation of cell proliferation9.06E-03
133GO:1903507: negative regulation of nucleic acid-templated transcription9.06E-03
134GO:0006879: cellular iron ion homeostasis9.06E-03
135GO:0000272: polysaccharide catabolic process9.06E-03
136GO:0018119: peptidyl-cysteine S-nitrosylation9.06E-03
137GO:0009640: photomorphogenesis9.92E-03
138GO:0009744: response to sucrose9.92E-03
139GO:0006790: sulfur compound metabolic process9.96E-03
140GO:0045037: protein import into chloroplast stroma9.96E-03
141GO:0046686: response to cadmium ion1.06E-02
142GO:0010588: cotyledon vascular tissue pattern formation1.09E-02
143GO:0009785: blue light signaling pathway1.09E-02
144GO:0006006: glucose metabolic process1.09E-02
145GO:0030036: actin cytoskeleton organization1.09E-02
146GO:0009725: response to hormone1.09E-02
147GO:0009767: photosynthetic electron transport chain1.09E-02
148GO:0006855: drug transmembrane transport1.16E-02
149GO:0048467: gynoecium development1.19E-02
150GO:0006541: glutamine metabolic process1.19E-02
151GO:0010020: chloroplast fission1.19E-02
152GO:0009933: meristem structural organization1.19E-02
153GO:0019253: reductive pentose-phosphate cycle1.19E-02
154GO:0019853: L-ascorbic acid biosynthetic process1.29E-02
155GO:0009825: multidimensional cell growth1.29E-02
156GO:0046854: phosphatidylinositol phosphorylation1.29E-02
157GO:0000162: tryptophan biosynthetic process1.39E-02
158GO:0010025: wax biosynthetic process1.39E-02
159GO:0006636: unsaturated fatty acid biosynthetic process1.39E-02
160GO:0006833: water transport1.39E-02
161GO:0055114: oxidation-reduction process1.48E-02
162GO:0009944: polarity specification of adaxial/abaxial axis1.50E-02
163GO:0005992: trehalose biosynthetic process1.50E-02
164GO:0006508: proteolysis1.52E-02
165GO:0080167: response to karrikin1.54E-02
166GO:0006096: glycolytic process1.59E-02
167GO:0008299: isoprenoid biosynthetic process1.60E-02
168GO:0006418: tRNA aminoacylation for protein translation1.60E-02
169GO:0043622: cortical microtubule organization1.60E-02
170GO:0007017: microtubule-based process1.60E-02
171GO:0010073: meristem maintenance1.60E-02
172GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway1.61E-02
173GO:0016114: terpenoid biosynthetic process1.72E-02
174GO:0003333: amino acid transmembrane transport1.72E-02
175GO:0048511: rhythmic process1.72E-02
176GO:0010431: seed maturation1.72E-02
177GO:0015979: photosynthesis1.82E-02
178GO:0009814: defense response, incompatible interaction1.83E-02
179GO:2000022: regulation of jasmonic acid mediated signaling pathway1.83E-02
180GO:0010227: floral organ abscission1.95E-02
181GO:0009306: protein secretion2.07E-02
182GO:0016117: carotenoid biosynthetic process2.19E-02
183GO:0009793: embryo development ending in seed dormancy2.25E-02
184GO:0080022: primary root development2.31E-02
185GO:0042335: cuticle development2.31E-02
186GO:0034220: ion transmembrane transport2.31E-02
187GO:0010087: phloem or xylem histogenesis2.31E-02
188GO:0009958: positive gravitropism2.44E-02
189GO:0045489: pectin biosynthetic process2.44E-02
190GO:0010154: fruit development2.44E-02
191GO:0009741: response to brassinosteroid2.44E-02
192GO:0042752: regulation of circadian rhythm2.57E-02
193GO:0009646: response to absence of light2.57E-02
194GO:0048825: cotyledon development2.70E-02
195GO:0008654: phospholipid biosynthetic process2.70E-02
196GO:0009851: auxin biosynthetic process2.70E-02
197GO:0016032: viral process2.97E-02
198GO:0006633: fatty acid biosynthetic process3.01E-02
199GO:0006413: translational initiation3.08E-02
200GO:0030163: protein catabolic process3.11E-02
201GO:0010090: trichome morphogenesis3.11E-02
202GO:0007623: circadian rhythm3.31E-02
203GO:0000910: cytokinesis3.54E-02
204GO:0016126: sterol biosynthetic process3.68E-02
205GO:0010027: thylakoid membrane organization3.68E-02
206GO:0010411: xyloglucan metabolic process4.13E-02
207GO:0016311: dephosphorylation4.29E-02
208GO:0048481: plant ovule development4.45E-02
209GO:0009813: flavonoid biosynthetic process4.60E-02
210GO:0009832: plant-type cell wall biogenesis4.60E-02
211GO:0010311: lateral root formation4.60E-02
212GO:0000160: phosphorelay signal transduction system4.60E-02
213GO:0006499: N-terminal protein myristoylation4.76E-02
214GO:0048527: lateral root development4.93E-02
215GO:0010119: regulation of stomatal movement4.93E-02
216GO:0009631: cold acclimation4.93E-02
RankGO TermAdjusted P value
1GO:0004076: biotin synthase activity0.00E+00
2GO:0061634: alpha-D-xyloside xylohydrolase0.00E+00
3GO:0050567: glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity0.00E+00
4GO:0043864: indoleacetamide hydrolase activity0.00E+00
5GO:0050613: delta14-sterol reductase activity0.00E+00
6GO:0080176: xyloglucan 1,6-alpha-xylosidase activity0.00E+00
7GO:0045435: lycopene epsilon cyclase activity0.00E+00
8GO:0004639: phosphoribosylaminoimidazolesuccinocarboxamide synthase activity0.00E+00
9GO:0008756: o-succinylbenzoate-CoA ligase activity0.00E+00
10GO:0004822: isoleucine-tRNA ligase activity0.00E+00
11GO:0030604: 1-deoxy-D-xylulose-5-phosphate reductoisomerase activity0.00E+00
12GO:0008176: tRNA (guanine-N7-)-methyltransferase activity0.00E+00
13GO:0016851: magnesium chelatase activity2.99E-05
14GO:0004040: amidase activity8.49E-05
15GO:0016788: hydrolase activity, acting on ester bonds9.14E-05
16GO:0000293: ferric-chelate reductase activity1.23E-04
17GO:0004366: glycerol-3-phosphate O-acyltransferase activity1.23E-04
18GO:0003993: acid phosphatase activity1.37E-04
19GO:0030570: pectate lyase activity1.70E-04
20GO:0008017: microtubule binding2.53E-04
21GO:0005227: calcium activated cation channel activity2.84E-04
22GO:0009496: plastoquinol--plastocyanin reductase activity2.84E-04
23GO:0004853: uroporphyrinogen decarboxylase activity2.84E-04
24GO:0031957: very long-chain fatty acid-CoA ligase activity2.84E-04
25GO:0010347: L-galactose-1-phosphate phosphatase activity2.84E-04
26GO:0042286: glutamate-1-semialdehyde 2,1-aminomutase activity2.84E-04
27GO:0008661: 1-deoxy-D-xylulose-5-phosphate synthase activity6.25E-04
28GO:0052832: inositol monophosphate 3-phosphatase activity6.25E-04
29GO:0004312: fatty acid synthase activity6.25E-04
30GO:0080097: L-tryptophan:pyruvate aminotransferase activity6.25E-04
31GO:0016630: protochlorophyllide reductase activity6.25E-04
32GO:0004829: threonine-tRNA ligase activity6.25E-04
33GO:0008839: 4-hydroxy-tetrahydrodipicolinate reductase6.25E-04
34GO:0008934: inositol monophosphate 1-phosphatase activity6.25E-04
35GO:0052833: inositol monophosphate 4-phosphatase activity6.25E-04
36GO:0008728: GTP diphosphokinase activity6.25E-04
37GO:0004512: inositol-3-phosphate synthase activity6.25E-04
38GO:0015172: acidic amino acid transmembrane transporter activity6.25E-04
39GO:0047100: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (phosphorylating) activity6.25E-04
40GO:0048531: beta-1,3-galactosyltransferase activity6.25E-04
41GO:0050362: L-tryptophan:2-oxoglutarate aminotransferase activity6.25E-04
42GO:0009977: proton motive force dependent protein transmembrane transporter activity6.25E-04
43GO:0042973: glucan endo-1,3-beta-D-glucosidase activity9.62E-04
44GO:0015462: ATPase-coupled protein transmembrane transporter activity1.01E-03
45GO:0005504: fatty acid binding1.01E-03
46GO:0003955: NAD(P)H dehydrogenase (quinone) activity1.01E-03
47GO:0003913: DNA photolyase activity1.01E-03
48GO:0002161: aminoacyl-tRNA editing activity1.01E-03
49GO:0070402: NADPH binding1.01E-03
50GO:0004049: anthranilate synthase activity1.01E-03
51GO:0004315: 3-oxoacyl-[acyl-carrier-protein] synthase activity1.01E-03
52GO:0080054: low-affinity nitrate transmembrane transporter activity1.01E-03
53GO:0003825: alpha,alpha-trehalose-phosphate synthase (UDP-forming) activity1.45E-03
54GO:0004375: glycine dehydrogenase (decarboxylating) activity1.45E-03
55GO:0015175: neutral amino acid transmembrane transporter activity1.45E-03
56GO:0048027: mRNA 5'-UTR binding1.45E-03
57GO:0003999: adenine phosphoribosyltransferase activity1.45E-03
58GO:0016628: oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor1.45E-03
59GO:0009882: blue light photoreceptor activity1.45E-03
60GO:0001872: (1->3)-beta-D-glucan binding1.45E-03
61GO:0016810: hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds1.94E-03
62GO:0045430: chalcone isomerase activity1.94E-03
63GO:0009044: xylan 1,4-beta-xylosidase activity1.94E-03
64GO:0046556: alpha-L-arabinofuranosidase activity1.94E-03
65GO:0003777: microtubule motor activity2.43E-03
66GO:0016491: oxidoreductase activity2.46E-03
67GO:0016846: carbon-sulfur lyase activity2.48E-03
68GO:0005525: GTP binding2.95E-03
69GO:0016208: AMP binding3.06E-03
70GO:0102229: amylopectin maltohydrolase activity3.06E-03
71GO:0042578: phosphoric ester hydrolase activity3.06E-03
72GO:0090447: glycerol-3-phosphate 2-O-acyltransferase activity3.06E-03
73GO:2001070: starch binding3.06E-03
74GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity3.68E-03
75GO:0016832: aldehyde-lyase activity3.68E-03
76GO:0102391: decanoate--CoA ligase activity3.68E-03
77GO:0016161: beta-amylase activity3.68E-03
78GO:0004723: calcium-dependent protein serine/threonine phosphatase activity3.68E-03
79GO:0005261: cation channel activity3.68E-03
80GO:0016791: phosphatase activity3.89E-03
81GO:0052689: carboxylic ester hydrolase activity4.06E-03
82GO:0005200: structural constituent of cytoskeleton4.14E-03
83GO:0009881: photoreceptor activity4.34E-03
84GO:0004467: long-chain fatty acid-CoA ligase activity4.34E-03
85GO:0016829: lyase activity4.92E-03
86GO:0043022: ribosome binding5.03E-03
87GO:0030247: polysaccharide binding5.47E-03
88GO:0005524: ATP binding5.50E-03
89GO:0008236: serine-type peptidase activity5.76E-03
90GO:0008173: RNA methyltransferase activity5.77E-03
91GO:0004743: pyruvate kinase activity7.35E-03
92GO:0005381: iron ion transmembrane transporter activity7.35E-03
93GO:0030955: potassium ion binding7.35E-03
94GO:0047372: acylglycerol lipase activity9.06E-03
95GO:0042802: identical protein binding9.10E-03
96GO:0000049: tRNA binding9.96E-03
97GO:0051537: 2 iron, 2 sulfur cluster binding1.07E-02
98GO:0000155: phosphorelay sensor kinase activity1.09E-02
99GO:0005528: FK506 binding1.50E-02
100GO:0003714: transcription corepressor activity1.50E-02
101GO:0004812: aminoacyl-tRNA ligase activity2.19E-02
102GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds2.28E-02
103GO:0003924: GTPase activity2.52E-02
104GO:0016853: isomerase activity2.57E-02
105GO:0010181: FMN binding2.57E-02
106GO:0046872: metal ion binding2.63E-02
107GO:0004252: serine-type endopeptidase activity2.66E-02
108GO:0004872: receptor activity2.70E-02
109GO:0048038: quinone binding2.83E-02
110GO:0004675: transmembrane receptor protein serine/threonine kinase activity3.08E-02
111GO:0008483: transaminase activity3.39E-02
112GO:0016722: oxidoreductase activity, oxidizing metal ions3.39E-02
113GO:0015250: water channel activity3.68E-02
114GO:0003743: translation initiation factor activity3.86E-02
115GO:0015238: drug transmembrane transporter activity4.60E-02
116GO:0004222: metalloendopeptidase activity4.76E-02
117GO:0005215: transporter activity4.91E-02
118GO:0016614: oxidoreductase activity, acting on CH-OH group of donors4.93E-02
119GO:0030145: manganese ion binding4.93E-02
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Gene type



Gene DE type