Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT4G38690

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:2000469: negative regulation of peroxidase activity0.00E+00
2GO:0090706: specification of plant organ position0.00E+00
3GO:0033494: ferulate metabolic process0.00E+00
4GO:0045176: apical protein localization0.00E+00
5GO:2000121: regulation of removal of superoxide radicals0.00E+00
6GO:0090279: regulation of calcium ion import0.00E+00
7GO:0090697: post-embryonic plant organ morphogenesis0.00E+00
8GO:0006573: valine metabolic process0.00E+00
9GO:2001294: malonyl-CoA catabolic process0.00E+00
10GO:1903508: positive regulation of nucleic acid-templated transcription0.00E+00
11GO:0071474: cellular hyperosmotic response0.00E+00
12GO:0007155: cell adhesion1.64E-05
13GO:0006021: inositol biosynthetic process9.64E-05
14GO:1902183: regulation of shoot apical meristem development1.50E-04
15GO:0010158: abaxial cell fate specification1.50E-04
16GO:0045038: protein import into chloroplast thylakoid membrane1.50E-04
17GO:0048527: lateral root development2.60E-04
18GO:0046167: glycerol-3-phosphate biosynthetic process4.02E-04
19GO:1902458: positive regulation of stomatal opening4.02E-04
20GO:0034337: RNA folding4.02E-04
21GO:0010450: inflorescence meristem growth4.02E-04
22GO:1902334: fructose export from vacuole to cytoplasm4.02E-04
23GO:0010362: negative regulation of anion channel activity by blue light4.02E-04
24GO:0015969: guanosine tetraphosphate metabolic process4.02E-04
25GO:0031426: polycistronic mRNA processing4.02E-04
26GO:0000481: maturation of 5S rRNA4.02E-04
27GO:0006659: phosphatidylserine biosynthetic process4.02E-04
28GO:0006551: leucine metabolic process4.02E-04
29GO:0043686: co-translational protein modification4.02E-04
30GO:0043087: regulation of GTPase activity4.02E-04
31GO:0016559: peroxisome fission4.66E-04
32GO:2000024: regulation of leaf development6.82E-04
33GO:0048354: mucilage biosynthetic process involved in seed coat development8.05E-04
34GO:0010155: regulation of proton transport8.71E-04
35GO:1903426: regulation of reactive oxygen species biosynthetic process8.71E-04
36GO:0051262: protein tetramerization8.71E-04
37GO:1900871: chloroplast mRNA modification8.71E-04
38GO:0030187: melatonin biosynthetic process8.71E-04
39GO:0010541: acropetal auxin transport8.71E-04
40GO:0007154: cell communication8.71E-04
41GO:0006650: glycerophospholipid metabolic process8.71E-04
42GO:0009641: shade avoidance9.37E-04
43GO:0010192: mucilage biosynthetic process9.37E-04
44GO:0009750: response to fructose1.08E-03
45GO:0046621: negative regulation of organ growth1.41E-03
46GO:0045165: cell fate commitment1.41E-03
47GO:0046168: glycerol-3-phosphate catabolic process1.41E-03
48GO:0009405: pathogenesis1.41E-03
49GO:0080055: low-affinity nitrate transport1.41E-03
50GO:0010160: formation of animal organ boundary1.41E-03
51GO:0006753: nucleoside phosphate metabolic process1.41E-03
52GO:0044375: regulation of peroxisome size1.41E-03
53GO:0010540: basipetal auxin transport1.57E-03
54GO:0010143: cutin biosynthetic process1.57E-03
55GO:0010207: photosystem II assembly1.57E-03
56GO:0009825: multidimensional cell growth1.76E-03
57GO:0042753: positive regulation of circadian rhythm1.97E-03
58GO:0009637: response to blue light2.03E-03
59GO:0006166: purine ribonucleoside salvage2.04E-03
60GO:0010239: chloroplast mRNA processing2.04E-03
61GO:0043481: anthocyanin accumulation in tissues in response to UV light2.04E-03
62GO:0006072: glycerol-3-phosphate metabolic process2.04E-03
63GO:0009647: skotomorphogenesis2.04E-03
64GO:0046739: transport of virus in multicellular host2.04E-03
65GO:0006164: purine nucleotide biosynthetic process2.04E-03
66GO:0009963: positive regulation of flavonoid biosynthetic process2.04E-03
67GO:0006168: adenine salvage2.04E-03
68GO:1990019: protein storage vacuole organization2.04E-03
69GO:0009944: polarity specification of adaxial/abaxial axis2.18E-03
70GO:0044550: secondary metabolite biosynthetic process2.19E-03
71GO:0048442: sepal development2.74E-03
72GO:0051322: anaphase2.74E-03
73GO:2000306: positive regulation of photomorphogenesis2.74E-03
74GO:0009649: entrainment of circadian clock2.74E-03
75GO:0008295: spermidine biosynthetic process2.74E-03
76GO:0032366: intracellular sterol transport2.74E-03
77GO:0009416: response to light stimulus3.07E-03
78GO:0048443: stamen development3.44E-03
79GO:0044209: AMP salvage3.51E-03
80GO:0006465: signal peptide processing3.51E-03
81GO:0034052: positive regulation of plant-type hypersensitive response3.51E-03
82GO:0046283: anthocyanin-containing compound metabolic process3.51E-03
83GO:0009904: chloroplast accumulation movement3.51E-03
84GO:0031365: N-terminal protein amino acid modification3.51E-03
85GO:0009585: red, far-red light phototransduction4.10E-03
86GO:0009958: positive gravitropism4.34E-03
87GO:0010154: fruit development4.34E-03
88GO:0006751: glutathione catabolic process4.35E-03
89GO:0048827: phyllome development4.35E-03
90GO:0010264: myo-inositol hexakisphosphate biosynthetic process4.35E-03
91GO:0045962: positive regulation of development, heterochronic4.35E-03
92GO:0060918: auxin transport4.35E-03
93GO:0009920: cell plate formation involved in plant-type cell wall biogenesis4.35E-03
94GO:0000741: karyogamy4.35E-03
95GO:0046855: inositol phosphate dephosphorylation4.35E-03
96GO:0006857: oligopeptide transport4.48E-03
97GO:0007018: microtubule-based movement4.67E-03
98GO:0009791: post-embryonic development5.01E-03
99GO:0048825: cotyledon development5.01E-03
100GO:0009749: response to glucose5.01E-03
101GO:0008654: phospholipid biosynthetic process5.01E-03
102GO:0000079: regulation of cyclin-dependent protein serine/threonine kinase activity5.24E-03
103GO:0009648: photoperiodism5.24E-03
104GO:0010076: maintenance of floral meristem identity5.24E-03
105GO:0009082: branched-chain amino acid biosynthetic process5.24E-03
106GO:0048280: vesicle fusion with Golgi apparatus5.24E-03
107GO:0009099: valine biosynthetic process5.24E-03
108GO:0009903: chloroplast avoidance movement5.24E-03
109GO:0030488: tRNA methylation5.24E-03
110GO:0009088: threonine biosynthetic process5.24E-03
111GO:0010583: response to cyclopentenone5.73E-03
112GO:0009395: phospholipid catabolic process6.19E-03
113GO:0048437: floral organ development6.19E-03
114GO:0015937: coenzyme A biosynthetic process6.19E-03
115GO:0000122: negative regulation of transcription from RNA polymerase II promoter6.19E-03
116GO:0006400: tRNA modification6.19E-03
117GO:0030307: positive regulation of cell growth6.19E-03
118GO:0009639: response to red or far red light6.51E-03
119GO:0043068: positive regulation of programmed cell death7.20E-03
120GO:0010078: maintenance of root meristem identity7.20E-03
121GO:0032508: DNA duplex unwinding7.20E-03
122GO:2000070: regulation of response to water deprivation7.20E-03
123GO:0043562: cellular response to nitrogen levels8.26E-03
124GO:0010093: specification of floral organ identity8.26E-03
125GO:0009932: cell tip growth8.26E-03
126GO:0015996: chlorophyll catabolic process8.26E-03
127GO:0007186: G-protein coupled receptor signaling pathway8.26E-03
128GO:0009097: isoleucine biosynthetic process8.26E-03
129GO:0055114: oxidation-reduction process8.28E-03
130GO:0006098: pentose-phosphate shunt9.38E-03
131GO:0051865: protein autoubiquitination9.38E-03
132GO:0048507: meristem development9.38E-03
133GO:0006189: 'de novo' IMP biosynthetic process9.38E-03
134GO:0009638: phototropism1.06E-02
135GO:0010018: far-red light signaling pathway1.06E-02
136GO:1900865: chloroplast RNA modification1.06E-02
137GO:0006811: ion transport1.12E-02
138GO:0010215: cellulose microfibril organization1.18E-02
139GO:0010119: regulation of stomatal movement1.18E-02
140GO:0006896: Golgi to vacuole transport1.18E-02
141GO:0006995: cellular response to nitrogen starvation1.18E-02
142GO:0048441: petal development1.18E-02
143GO:0043069: negative regulation of programmed cell death1.18E-02
144GO:0009684: indoleacetic acid biosynthetic process1.30E-02
145GO:0000038: very long-chain fatty acid metabolic process1.30E-02
146GO:0016485: protein processing1.30E-02
147GO:0008361: regulation of cell size1.44E-02
148GO:0006790: sulfur compound metabolic process1.44E-02
149GO:0016024: CDP-diacylglycerol biosynthetic process1.44E-02
150GO:0045037: protein import into chloroplast stroma1.44E-02
151GO:0006631: fatty acid metabolic process1.54E-02
152GO:0009718: anthocyanin-containing compound biosynthetic process1.57E-02
153GO:0006094: gluconeogenesis1.57E-02
154GO:0009767: photosynthetic electron transport chain1.57E-02
155GO:0010588: cotyledon vascular tissue pattern formation1.57E-02
156GO:0030048: actin filament-based movement1.57E-02
157GO:0009785: blue light signaling pathway1.57E-02
158GO:0010229: inflorescence development1.57E-02
159GO:0009744: response to sucrose1.67E-02
160GO:0009640: photomorphogenesis1.67E-02
161GO:0009887: animal organ morphogenesis1.71E-02
162GO:0048467: gynoecium development1.71E-02
163GO:0048440: carpel development1.71E-02
164GO:0006541: glutamine metabolic process1.71E-02
165GO:0010020: chloroplast fission1.71E-02
166GO:0009933: meristem structural organization1.71E-02
167GO:0010223: secondary shoot formation1.71E-02
168GO:0007031: peroxisome organization1.86E-02
169GO:0042343: indole glucosinolate metabolic process1.86E-02
170GO:0019853: L-ascorbic acid biosynthetic process1.86E-02
171GO:0046854: phosphatidylinositol phosphorylation1.86E-02
172GO:0000162: tryptophan biosynthetic process2.01E-02
173GO:0000027: ribosomal large subunit assembly2.16E-02
174GO:0007010: cytoskeleton organization2.16E-02
175GO:0007017: microtubule-based process2.32E-02
176GO:0051260: protein homooligomerization2.48E-02
177GO:0048511: rhythmic process2.48E-02
178GO:0098542: defense response to other organism2.48E-02
179GO:0019915: lipid storage2.48E-02
180GO:0009909: regulation of flower development2.50E-02
181GO:0019748: secondary metabolic process2.64E-02
182GO:0009814: defense response, incompatible interaction2.64E-02
183GO:0071215: cellular response to abscisic acid stimulus2.81E-02
184GO:0009294: DNA mediated transformation2.81E-02
185GO:0071369: cellular response to ethylene stimulus2.81E-02
186GO:0019722: calcium-mediated signaling2.99E-02
187GO:0042147: retrograde transport, endosome to Golgi3.16E-02
188GO:0080022: primary root development3.34E-02
189GO:0010087: phloem or xylem histogenesis3.34E-02
190GO:0045489: pectin biosynthetic process3.53E-02
191GO:0006520: cellular amino acid metabolic process3.53E-02
192GO:0010197: polar nucleus fusion3.53E-02
193GO:0010182: sugar mediated signaling pathway3.53E-02
194GO:0009646: response to absence of light3.71E-02
195GO:0009851: auxin biosynthetic process3.90E-02
196GO:0006623: protein targeting to vacuole3.90E-02
197GO:0010183: pollen tube guidance3.90E-02
198GO:0071554: cell wall organization or biogenesis4.09E-02
199GO:0006891: intra-Golgi vesicle-mediated transport4.09E-02
200GO:0007264: small GTPase mediated signal transduction4.29E-02
201GO:0016032: viral process4.29E-02
202GO:0010252: auxin homeostasis4.69E-02
203GO:0006464: cellular protein modification process4.69E-02
204GO:0007165: signal transduction4.80E-02
205GO:0007267: cell-cell signaling4.90E-02
RankGO TermAdjusted P value
1GO:0036033: mediator complex binding0.00E+00
2GO:0004740: pyruvate dehydrogenase (acetyl-transferring) kinase activity0.00E+00
3GO:0004059: aralkylamine N-acetyltransferase activity0.00E+00
4GO:0036361: racemase activity, acting on amino acids and derivatives0.00E+00
5GO:0004639: phosphoribosylaminoimidazolesuccinocarboxamide synthase activity0.00E+00
6GO:0016855: racemase and epimerase activity, acting on amino acids and derivatives0.00E+00
7GO:0008017: microtubule binding1.17E-04
8GO:0000293: ferric-chelate reductase activity2.14E-04
9GO:0010347: L-galactose-1-phosphate phosphatase activity4.02E-04
10GO:0047259: glucomannan 4-beta-mannosyltransferase activity4.02E-04
11GO:0005227: calcium activated cation channel activity4.02E-04
12GO:0080132: fatty acid alpha-hydroxylase activity4.02E-04
13GO:0010945: CoA pyrophosphatase activity4.02E-04
14GO:0003984: acetolactate synthase activity4.02E-04
15GO:0004795: threonine synthase activity4.02E-04
16GO:0042586: peptide deformylase activity4.02E-04
17GO:0004328: formamidase activity4.02E-04
18GO:0003839: gamma-glutamylcyclotransferase activity8.71E-04
19GO:0050362: L-tryptophan:2-oxoglutarate aminotransferase activity8.71E-04
20GO:0004766: spermidine synthase activity8.71E-04
21GO:0052832: inositol monophosphate 3-phosphatase activity8.71E-04
22GO:0034432: bis(5'-adenosyl)-pentaphosphatase activity8.71E-04
23GO:0080097: L-tryptophan:pyruvate aminotransferase activity8.71E-04
24GO:0008934: inositol monophosphate 1-phosphatase activity8.71E-04
25GO:0004081: bis(5'-nucleosyl)-tetraphosphatase (asymmetrical) activity8.71E-04
26GO:0052833: inositol monophosphate 4-phosphatase activity8.71E-04
27GO:0015929: hexosaminidase activity8.71E-04
28GO:0004563: beta-N-acetylhexosaminidase activity8.71E-04
29GO:0005353: fructose transmembrane transporter activity8.71E-04
30GO:0004512: inositol-3-phosphate synthase activity8.71E-04
31GO:0008728: GTP diphosphokinase activity8.71E-04
32GO:0048531: beta-1,3-galactosyltransferase activity8.71E-04
33GO:0017118: lipoyltransferase activity8.71E-04
34GO:0080045: quercetin 3'-O-glucosyltransferase activity8.71E-04
35GO:0042802: identical protein binding9.16E-04
36GO:0016491: oxidoreductase activity9.19E-04
37GO:0004049: anthranilate synthase activity1.41E-03
38GO:0080054: low-affinity nitrate transmembrane transporter activity1.41E-03
39GO:0050734: hydroxycinnamoyltransferase activity1.41E-03
40GO:0005504: fatty acid binding1.41E-03
41GO:0003913: DNA photolyase activity1.41E-03
42GO:0004148: dihydrolipoyl dehydrogenase activity1.41E-03
43GO:0003955: NAD(P)H dehydrogenase (quinone) activity1.41E-03
44GO:0047334: diphosphate-fructose-6-phosphate 1-phosphotransferase activity1.41E-03
45GO:0004367: glycerol-3-phosphate dehydrogenase [NAD+] activity1.41E-03
46GO:0042973: glucan endo-1,3-beta-D-glucosidase activity1.57E-03
47GO:0048027: mRNA 5'-UTR binding2.04E-03
48GO:0003999: adenine phosphoribosyltransferase activity2.04E-03
49GO:0008893: guanosine-3',5'-bis(diphosphate) 3'-diphosphatase activity2.04E-03
50GO:0016811: hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides2.04E-03
51GO:0009882: blue light photoreceptor activity2.04E-03
52GO:0003993: acid phosphatase activity2.15E-03
53GO:0045430: chalcone isomerase activity2.74E-03
54GO:0016709: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen2.97E-03
55GO:0035091: phosphatidylinositol binding3.10E-03
56GO:0030570: pectate lyase activity3.16E-03
57GO:0016846: carbon-sulfur lyase activity3.51E-03
58GO:0070696: transmembrane receptor protein serine/threonine kinase binding3.51E-03
59GO:0005506: iron ion binding4.04E-03
60GO:0080046: quercetin 4'-O-glucosyltransferase activity4.35E-03
61GO:0004332: fructose-bisphosphate aldolase activity4.35E-03
62GO:0000210: NAD+ diphosphatase activity4.35E-03
63GO:0035673: oligopeptide transmembrane transporter activity4.35E-03
64GO:0004366: glycerol-3-phosphate O-acyltransferase activity4.35E-03
65GO:0090447: glycerol-3-phosphate 2-O-acyltransferase activity4.35E-03
66GO:0003777: microtubule motor activity4.67E-03
67GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity5.24E-03
68GO:0051753: mannan synthase activity5.24E-03
69GO:0005261: cation channel activity5.24E-03
70GO:0009927: histidine phosphotransfer kinase activity5.24E-03
71GO:0019825: oxygen binding6.16E-03
72GO:0003872: 6-phosphofructokinase activity6.19E-03
73GO:0016746: transferase activity, transferring acyl groups6.68E-03
74GO:0016722: oxidoreductase activity, oxidizing metal ions6.91E-03
75GO:0047196: long-chain-alcohol O-fatty-acyltransferase activity8.26E-03
76GO:0103095: wax ester synthase activity8.26E-03
77GO:0008173: RNA methyltransferase activity8.26E-03
78GO:0030247: polysaccharide binding9.16E-03
79GO:0020037: heme binding1.12E-02
80GO:0047372: acylglycerol lipase activity1.30E-02
81GO:0008515: sucrose transmembrane transporter activity1.30E-02
82GO:0000976: transcription regulatory region sequence-specific DNA binding1.44E-02
83GO:0015198: oligopeptide transporter activity1.44E-02
84GO:0000155: phosphorelay sensor kinase activity1.57E-02
85GO:0010329: auxin efflux transmembrane transporter activity1.57E-02
86GO:0004185: serine-type carboxypeptidase activity1.67E-02
87GO:0003774: motor activity1.71E-02
88GO:0031624: ubiquitin conjugating enzyme binding1.71E-02
89GO:0008146: sulfotransferase activity1.86E-02
90GO:0051119: sugar transmembrane transporter activity1.86E-02
91GO:0008270: zinc ion binding2.47E-02
92GO:0016747: transferase activity, transferring acyl groups other than amino-acyl groups2.75E-02
93GO:0008080: N-acetyltransferase activity3.53E-02
94GO:0005355: glucose transmembrane transporter activity3.71E-02
95GO:0010181: FMN binding3.71E-02
96GO:0004871: signal transducer activity3.90E-02
97GO:0019901: protein kinase binding3.90E-02
98GO:0048038: quinone binding4.09E-02
99GO:0016829: lyase activity4.33E-02
100GO:0016791: phosphatase activity4.69E-02
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Gene type



Gene DE type