GO Enrichment Analysis of Co-expressed Genes with
AT4G38660
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0045014: negative regulation of transcription by glucose | 0.00E+00 |
| 2 | GO:0000819: sister chromatid segregation | 0.00E+00 |
| 3 | GO:0044774: mitotic DNA integrity checkpoint | 0.00E+00 |
| 4 | GO:0090322: regulation of superoxide metabolic process | 0.00E+00 |
| 5 | GO:1901528: hydrogen peroxide mediated signaling pathway involved in stomatal movement | 0.00E+00 |
| 6 | GO:0080127: fruit septum development | 0.00E+00 |
| 7 | GO:0019988: charged-tRNA amino acid modification | 0.00E+00 |
| 8 | GO:0010323: negative regulation of isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway | 0.00E+00 |
| 9 | GO:0010588: cotyledon vascular tissue pattern formation | 1.84E-05 |
| 10 | GO:0042127: regulation of cell proliferation | 7.97E-05 |
| 11 | GO:0080112: seed growth | 1.86E-04 |
| 12 | GO:1905039: carboxylic acid transmembrane transport | 1.86E-04 |
| 13 | GO:1905200: gibberellic acid transmembrane transport | 1.86E-04 |
| 14 | GO:0033206: meiotic cytokinesis | 1.86E-04 |
| 15 | GO:0048016: inositol phosphate-mediated signaling | 1.86E-04 |
| 16 | GO:0048829: root cap development | 3.16E-04 |
| 17 | GO:1901529: positive regulation of anion channel activity | 4.19E-04 |
| 18 | GO:0010569: regulation of double-strand break repair via homologous recombination | 4.19E-04 |
| 19 | GO:0048731: system development | 4.19E-04 |
| 20 | GO:2000071: regulation of defense response by callose deposition | 4.19E-04 |
| 21 | GO:1901527: abscisic acid-activated signaling pathway involved in stomatal movement | 6.84E-04 |
| 22 | GO:0003333: amino acid transmembrane transport | 8.93E-04 |
| 23 | GO:2000022: regulation of jasmonic acid mediated signaling pathway | 9.73E-04 |
| 24 | GO:0007276: gamete generation | 9.77E-04 |
| 25 | GO:0033169: histone H3-K9 demethylation | 9.77E-04 |
| 26 | GO:0009102: biotin biosynthetic process | 9.77E-04 |
| 27 | GO:0006221: pyrimidine nucleotide biosynthetic process | 1.29E-03 |
| 28 | GO:0006808: regulation of nitrogen utilization | 1.29E-03 |
| 29 | GO:0008033: tRNA processing | 1.34E-03 |
| 30 | GO:0010305: leaf vascular tissue pattern formation | 1.44E-03 |
| 31 | GO:0016120: carotene biosynthetic process | 1.65E-03 |
| 32 | GO:0016123: xanthophyll biosynthetic process | 1.65E-03 |
| 33 | GO:0032957: inositol trisphosphate metabolic process | 1.65E-03 |
| 34 | GO:0009733: response to auxin | 1.66E-03 |
| 35 | GO:0032502: developmental process | 1.89E-03 |
| 36 | GO:0016554: cytidine to uridine editing | 2.03E-03 |
| 37 | GO:1904668: positive regulation of ubiquitin protein ligase activity | 2.03E-03 |
| 38 | GO:0046855: inositol phosphate dephosphorylation | 2.03E-03 |
| 39 | GO:0042793: transcription from plastid promoter | 2.03E-03 |
| 40 | GO:0003006: developmental process involved in reproduction | 2.03E-03 |
| 41 | GO:0009643: photosynthetic acclimation | 2.03E-03 |
| 42 | GO:0010067: procambium histogenesis | 2.43E-03 |
| 43 | GO:2000033: regulation of seed dormancy process | 2.43E-03 |
| 44 | GO:0000079: regulation of cyclin-dependent protein serine/threonine kinase activity | 2.43E-03 |
| 45 | GO:0010310: regulation of hydrogen peroxide metabolic process | 2.43E-03 |
| 46 | GO:0000082: G1/S transition of mitotic cell cycle | 2.87E-03 |
| 47 | GO:0010098: suspensor development | 2.87E-03 |
| 48 | GO:0010444: guard mother cell differentiation | 2.87E-03 |
| 49 | GO:0010103: stomatal complex morphogenesis | 2.87E-03 |
| 50 | GO:0000712: resolution of meiotic recombination intermediates | 2.87E-03 |
| 51 | GO:0006401: RNA catabolic process | 2.87E-03 |
| 52 | GO:0010374: stomatal complex development | 2.87E-03 |
| 53 | GO:0009787: regulation of abscisic acid-activated signaling pathway | 3.32E-03 |
| 54 | GO:0009642: response to light intensity | 3.32E-03 |
| 55 | GO:0042255: ribosome assembly | 3.32E-03 |
| 56 | GO:0046620: regulation of organ growth | 3.32E-03 |
| 57 | GO:0006353: DNA-templated transcription, termination | 3.32E-03 |
| 58 | GO:0009938: negative regulation of gibberellic acid mediated signaling pathway | 3.32E-03 |
| 59 | GO:0006402: mRNA catabolic process | 3.32E-03 |
| 60 | GO:0010492: maintenance of shoot apical meristem identity | 3.32E-03 |
| 61 | GO:0052543: callose deposition in cell wall | 3.32E-03 |
| 62 | GO:0010233: phloem transport | 3.80E-03 |
| 63 | GO:0048574: long-day photoperiodism, flowering | 3.80E-03 |
| 64 | GO:0010052: guard cell differentiation | 3.80E-03 |
| 65 | GO:0007389: pattern specification process | 3.80E-03 |
| 66 | GO:0006865: amino acid transport | 4.00E-03 |
| 67 | GO:0009867: jasmonic acid mediated signaling pathway | 4.19E-03 |
| 68 | GO:0009734: auxin-activated signaling pathway | 4.20E-03 |
| 69 | GO:0048507: meristem development | 4.30E-03 |
| 70 | GO:0048589: developmental growth | 4.30E-03 |
| 71 | GO:1900865: chloroplast RNA modification | 4.82E-03 |
| 72 | GO:0031425: chloroplast RNA processing | 4.82E-03 |
| 73 | GO:0006535: cysteine biosynthetic process from serine | 5.36E-03 |
| 74 | GO:0009641: shade avoidance | 5.36E-03 |
| 75 | GO:0016441: posttranscriptional gene silencing | 5.36E-03 |
| 76 | GO:0006949: syncytium formation | 5.36E-03 |
| 77 | GO:0006259: DNA metabolic process | 5.36E-03 |
| 78 | GO:0009744: response to sucrose | 5.39E-03 |
| 79 | GO:0009682: induced systemic resistance | 5.92E-03 |
| 80 | GO:0008285: negative regulation of cell proliferation | 5.92E-03 |
| 81 | GO:0015770: sucrose transport | 5.92E-03 |
| 82 | GO:0006265: DNA topological change | 5.92E-03 |
| 83 | GO:1903507: negative regulation of nucleic acid-templated transcription | 5.92E-03 |
| 84 | GO:0009750: response to fructose | 5.92E-03 |
| 85 | GO:0046856: phosphatidylinositol dephosphorylation | 5.92E-03 |
| 86 | GO:0010582: floral meristem determinacy | 6.51E-03 |
| 87 | GO:0010152: pollen maturation | 6.51E-03 |
| 88 | GO:0006312: mitotic recombination | 6.51E-03 |
| 89 | GO:0012501: programmed cell death | 6.51E-03 |
| 90 | GO:0031347: regulation of defense response | 6.52E-03 |
| 91 | GO:0051301: cell division | 6.79E-03 |
| 92 | GO:0009793: embryo development ending in seed dormancy | 6.88E-03 |
| 93 | GO:0010102: lateral root morphogenesis | 7.11E-03 |
| 94 | GO:0006364: rRNA processing | 7.26E-03 |
| 95 | GO:0045893: positive regulation of transcription, DNA-templated | 7.35E-03 |
| 96 | GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway | 7.39E-03 |
| 97 | GO:0009887: animal organ morphogenesis | 7.73E-03 |
| 98 | GO:0048467: gynoecium development | 7.73E-03 |
| 99 | GO:0080188: RNA-directed DNA methylation | 8.37E-03 |
| 100 | GO:0009901: anther dehiscence | 8.37E-03 |
| 101 | GO:0006636: unsaturated fatty acid biosynthetic process | 9.03E-03 |
| 102 | GO:0009863: salicylic acid mediated signaling pathway | 9.71E-03 |
| 103 | GO:0010187: negative regulation of seed germination | 9.71E-03 |
| 104 | GO:2000377: regulation of reactive oxygen species metabolic process | 9.71E-03 |
| 105 | GO:0019344: cysteine biosynthetic process | 9.71E-03 |
| 106 | GO:0009740: gibberellic acid mediated signaling pathway | 9.74E-03 |
| 107 | GO:0009624: response to nematode | 1.03E-02 |
| 108 | GO:0051726: regulation of cell cycle | 1.10E-02 |
| 109 | GO:0006468: protein phosphorylation | 1.17E-02 |
| 110 | GO:0030245: cellulose catabolic process | 1.19E-02 |
| 111 | GO:0009831: plant-type cell wall modification involved in multidimensional cell growth | 1.26E-02 |
| 112 | GO:0048443: stamen development | 1.34E-02 |
| 113 | GO:0080022: primary root development | 1.50E-02 |
| 114 | GO:0010501: RNA secondary structure unwinding | 1.50E-02 |
| 115 | GO:0010051: xylem and phloem pattern formation | 1.50E-02 |
| 116 | GO:0010087: phloem or xylem histogenesis | 1.50E-02 |
| 117 | GO:0010118: stomatal movement | 1.50E-02 |
| 118 | GO:0009741: response to brassinosteroid | 1.58E-02 |
| 119 | GO:0007059: chromosome segregation | 1.66E-02 |
| 120 | GO:0040008: regulation of growth | 1.71E-02 |
| 121 | GO:0007165: signal transduction | 1.74E-02 |
| 122 | GO:0009749: response to glucose | 1.75E-02 |
| 123 | GO:0045490: pectin catabolic process | 1.79E-02 |
| 124 | GO:0080156: mitochondrial mRNA modification | 1.83E-02 |
| 125 | GO:0002229: defense response to oomycetes | 1.83E-02 |
| 126 | GO:0009451: RNA modification | 1.84E-02 |
| 127 | GO:0010583: response to cyclopentenone | 1.92E-02 |
| 128 | GO:0030163: protein catabolic process | 2.01E-02 |
| 129 | GO:0009739: response to gibberellin | 2.01E-02 |
| 130 | GO:0019760: glucosinolate metabolic process | 2.10E-02 |
| 131 | GO:0006464: cellular protein modification process | 2.10E-02 |
| 132 | GO:0009828: plant-type cell wall loosening | 2.10E-02 |
| 133 | GO:0009738: abscisic acid-activated signaling pathway | 2.30E-02 |
| 134 | GO:0010029: regulation of seed germination | 2.48E-02 |
| 135 | GO:0006351: transcription, DNA-templated | 2.55E-02 |
| 136 | GO:0015995: chlorophyll biosynthetic process | 2.67E-02 |
| 137 | GO:0016311: dephosphorylation | 2.78E-02 |
| 138 | GO:0009658: chloroplast organization | 2.78E-02 |
| 139 | GO:0048481: plant ovule development | 2.88E-02 |
| 140 | GO:0010218: response to far red light | 3.08E-02 |
| 141 | GO:0007049: cell cycle | 3.10E-02 |
| 142 | GO:0048366: leaf development | 3.27E-02 |
| 143 | GO:0080167: response to karrikin | 3.44E-02 |
| 144 | GO:0030001: metal ion transport | 3.74E-02 |
| 145 | GO:0045892: negative regulation of transcription, DNA-templated | 4.18E-02 |
| 146 | GO:0006869: lipid transport | 4.51E-02 |
| 147 | GO:0009664: plant-type cell wall organization | 4.79E-02 |
| 148 | GO:0042538: hyperosmotic salinity response | 4.79E-02 |
| 149 | GO:0006355: regulation of transcription, DNA-templated | 4.94E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0004141: dethiobiotin synthase activity | 0.00E+00 |
| 2 | GO:0004835: tubulin-tyrosine ligase activity | 0.00E+00 |
| 3 | GO:0004015: adenosylmethionine-8-amino-7-oxononanoate transaminase activity | 0.00E+00 |
| 4 | GO:0043399: tRNA A64-2'-O-ribosylphosphate transferase activity | 0.00E+00 |
| 5 | GO:0016763: transferase activity, transferring pentosyl groups | 0.00E+00 |
| 6 | GO:0046030: inositol trisphosphate phosphatase activity | 1.86E-04 |
| 7 | GO:0016901: oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor | 1.86E-04 |
| 8 | GO:0004654: polyribonucleotide nucleotidyltransferase activity | 1.86E-04 |
| 9 | GO:1905201: gibberellin transmembrane transporter activity | 1.86E-04 |
| 10 | GO:0032454: histone demethylase activity (H3-K9 specific) | 4.19E-04 |
| 11 | GO:0042389: omega-3 fatty acid desaturase activity | 4.19E-04 |
| 12 | GO:0004809: tRNA (guanine-N2-)-methyltransferase activity | 4.19E-04 |
| 13 | GO:0003723: RNA binding | 6.72E-04 |
| 14 | GO:0009041: uridylate kinase activity | 9.77E-04 |
| 15 | GO:0003916: DNA topoisomerase activity | 9.77E-04 |
| 16 | GO:0030570: pectate lyase activity | 1.06E-03 |
| 17 | GO:0010328: auxin influx transmembrane transporter activity | 1.29E-03 |
| 18 | GO:0010011: auxin binding | 1.29E-03 |
| 19 | GO:0042803: protein homodimerization activity | 1.94E-03 |
| 20 | GO:0034485: phosphatidylinositol-3,4,5-trisphosphate 5-phosphatase activity | 2.03E-03 |
| 21 | GO:0097027: ubiquitin-protein transferase activator activity | 2.03E-03 |
| 22 | GO:0003968: RNA-directed 5'-3' RNA polymerase activity | 2.03E-03 |
| 23 | GO:0004124: cysteine synthase activity | 2.43E-03 |
| 24 | GO:0010997: anaphase-promoting complex binding | 2.43E-03 |
| 25 | GO:0004519: endonuclease activity | 2.83E-03 |
| 26 | GO:0016717: oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water | 3.80E-03 |
| 27 | GO:0003918: DNA topoisomerase type II (ATP-hydrolyzing) activity | 3.80E-03 |
| 28 | GO:0000989: transcription factor activity, transcription factor binding | 4.30E-03 |
| 29 | GO:0031490: chromatin DNA binding | 4.82E-03 |
| 30 | GO:0008515: sucrose transmembrane transporter activity | 5.92E-03 |
| 31 | GO:0015293: symporter activity | 6.06E-03 |
| 32 | GO:0003700: transcription factor activity, sequence-specific DNA binding | 6.25E-03 |
| 33 | GO:0004439: phosphatidylinositol-4,5-bisphosphate 5-phosphatase activity | 6.51E-03 |
| 34 | GO:0000976: transcription regulatory region sequence-specific DNA binding | 6.51E-03 |
| 35 | GO:0000175: 3'-5'-exoribonuclease activity | 7.11E-03 |
| 36 | GO:0003725: double-stranded RNA binding | 7.11E-03 |
| 37 | GO:0015171: amino acid transmembrane transporter activity | 8.04E-03 |
| 38 | GO:0051119: sugar transmembrane transporter activity | 8.37E-03 |
| 39 | GO:0003712: transcription cofactor activity | 8.37E-03 |
| 40 | GO:0004190: aspartic-type endopeptidase activity | 8.37E-03 |
| 41 | GO:0003714: transcription corepressor activity | 9.71E-03 |
| 42 | GO:0003779: actin binding | 1.00E-02 |
| 43 | GO:0008094: DNA-dependent ATPase activity | 1.11E-02 |
| 44 | GO:0019706: protein-cysteine S-palmitoyltransferase activity | 1.11E-02 |
| 45 | GO:0004674: protein serine/threonine kinase activity | 1.12E-02 |
| 46 | GO:0043565: sequence-specific DNA binding | 1.21E-02 |
| 47 | GO:0008810: cellulase activity | 1.26E-02 |
| 48 | GO:0003727: single-stranded RNA binding | 1.34E-02 |
| 49 | GO:0005102: receptor binding | 1.42E-02 |
| 50 | GO:0030170: pyridoxal phosphate binding | 1.44E-02 |
| 51 | GO:0000977: RNA polymerase II regulatory region sequence-specific DNA binding | 1.48E-02 |
| 52 | GO:0016538: cyclin-dependent protein serine/threonine kinase regulator activity | 1.58E-02 |
| 53 | GO:0019901: protein kinase binding | 1.75E-02 |
| 54 | GO:0048038: quinone binding | 1.83E-02 |
| 55 | GO:0003676: nucleic acid binding | 2.09E-02 |
| 56 | GO:0005200: structural constituent of cytoskeleton | 2.19E-02 |
| 57 | GO:0004004: ATP-dependent RNA helicase activity | 2.67E-02 |
| 58 | GO:0005096: GTPase activator activity | 2.98E-02 |
| 59 | GO:0004672: protein kinase activity | 3.05E-02 |
| 60 | GO:0004693: cyclin-dependent protein serine/threonine kinase activity | 3.08E-02 |
| 61 | GO:0003993: acid phosphatase activity | 3.51E-02 |
| 62 | GO:0005515: protein binding | 4.04E-02 |
| 63 | GO:0004871: signal transducer activity | 4.31E-02 |
| 64 | GO:0043621: protein self-association | 4.31E-02 |