Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT4G38540

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0090359: negative regulation of abscisic acid biosynthetic process0.00E+00
2GO:0006858: extracellular transport0.00E+00
3GO:0043620: regulation of DNA-templated transcription in response to stress0.00E+00
4GO:0010401: pectic galactan metabolic process0.00E+00
5GO:0051553: flavone biosynthetic process0.00E+00
6GO:0010398: xylogalacturonan metabolic process0.00E+00
7GO:0006497: protein lipidation0.00E+00
8GO:0072722: response to amitrole0.00E+00
9GO:0010055: atrichoblast differentiation0.00E+00
10GO:0090630: activation of GTPase activity2.08E-05
11GO:0009636: response to toxic substance4.99E-05
12GO:0009407: toxin catabolic process1.85E-04
13GO:0016998: cell wall macromolecule catabolic process2.17E-04
14GO:0046256: 2,4,6-trinitrotoluene catabolic process3.63E-04
15GO:0043547: positive regulation of GTPase activity3.63E-04
16GO:1901430: positive regulation of syringal lignin biosynthetic process3.63E-04
17GO:0032491: detection of molecule of fungal origin3.63E-04
18GO:0031338: regulation of vesicle fusion3.63E-04
19GO:0060862: negative regulation of floral organ abscission3.63E-04
20GO:0019605: butyrate metabolic process3.63E-04
21GO:0034214: protein hexamerization3.63E-04
22GO:0010045: response to nickel cation3.63E-04
23GO:0009968: negative regulation of signal transduction3.63E-04
24GO:0006083: acetate metabolic process3.63E-04
25GO:1990542: mitochondrial transmembrane transport3.63E-04
26GO:0032107: regulation of response to nutrient levels3.63E-04
27GO:1902600: hydrogen ion transmembrane transport3.63E-04
28GO:0016337: single organismal cell-cell adhesion3.63E-04
29GO:0016559: peroxisome fission4.01E-04
30GO:0010150: leaf senescence4.55E-04
31GO:0015031: protein transport5.56E-04
32GO:0008202: steroid metabolic process6.94E-04
33GO:0052541: plant-type cell wall cellulose metabolic process7.89E-04
34GO:0009727: detection of ethylene stimulus7.89E-04
35GO:0010115: regulation of abscisic acid biosynthetic process7.89E-04
36GO:0010042: response to manganese ion7.89E-04
37GO:0015865: purine nucleotide transport7.89E-04
38GO:0010271: regulation of chlorophyll catabolic process7.89E-04
39GO:0002240: response to molecule of oomycetes origin7.89E-04
40GO:1902000: homogentisate catabolic process7.89E-04
41GO:0010541: acropetal auxin transport7.89E-04
42GO:0019725: cellular homeostasis7.89E-04
43GO:0031349: positive regulation of defense response7.89E-04
44GO:0015012: heparan sulfate proteoglycan biosynthetic process7.89E-04
45GO:1901703: protein localization involved in auxin polar transport7.89E-04
46GO:0042814: monopolar cell growth7.89E-04
47GO:0006123: mitochondrial electron transport, cytochrome c to oxygen7.89E-04
48GO:0010155: regulation of proton transport7.89E-04
49GO:0006024: glycosaminoglycan biosynthetic process7.89E-04
50GO:0006032: chitin catabolic process8.10E-04
51GO:0000266: mitochondrial fission1.06E-03
52GO:0009072: aromatic amino acid family metabolic process1.28E-03
53GO:0010288: response to lead ion1.28E-03
54GO:0051176: positive regulation of sulfur metabolic process1.28E-03
55GO:0072661: protein targeting to plasma membrane1.28E-03
56GO:0010186: positive regulation of cellular defense response1.28E-03
57GO:0009410: response to xenobiotic stimulus1.28E-03
58GO:0010272: response to silver ion1.28E-03
59GO:0002237: response to molecule of bacterial origin1.36E-03
60GO:0016192: vesicle-mediated transport1.57E-03
61GO:0002239: response to oomycetes1.84E-03
62GO:0046902: regulation of mitochondrial membrane permeability1.84E-03
63GO:0070676: intralumenal vesicle formation1.84E-03
64GO:0001676: long-chain fatty acid metabolic process1.84E-03
65GO:0046513: ceramide biosynthetic process1.84E-03
66GO:0050832: defense response to fungus1.91E-03
67GO:0006887: exocytosis2.08E-03
68GO:0006886: intracellular protein transport2.09E-03
69GO:0033358: UDP-L-arabinose biosynthetic process2.47E-03
70GO:0033356: UDP-L-arabinose metabolic process2.47E-03
71GO:0000919: cell plate assembly2.47E-03
72GO:0006878: cellular copper ion homeostasis2.47E-03
73GO:0060548: negative regulation of cell death2.47E-03
74GO:0045227: capsule polysaccharide biosynthetic process2.47E-03
75GO:0048638: regulation of developmental growth2.47E-03
76GO:0000304: response to singlet oxygen3.16E-03
77GO:0030308: negative regulation of cell growth3.16E-03
78GO:0009164: nucleoside catabolic process3.16E-03
79GO:0098719: sodium ion import across plasma membrane3.16E-03
80GO:0006564: L-serine biosynthetic process3.16E-03
81GO:0097428: protein maturation by iron-sulfur cluster transfer3.16E-03
82GO:0006097: glyoxylate cycle3.16E-03
83GO:0006665: sphingolipid metabolic process3.16E-03
84GO:0018344: protein geranylgeranylation3.16E-03
85GO:0009809: lignin biosynthetic process3.37E-03
86GO:0060918: auxin transport3.91E-03
87GO:0009920: cell plate formation involved in plant-type cell wall biogenesis3.91E-03
88GO:0009117: nucleotide metabolic process3.91E-03
89GO:0002238: response to molecule of fungal origin3.91E-03
90GO:0019243: methylglyoxal catabolic process to D-lactate via S-lactoyl-glutathione3.91E-03
91GO:0010942: positive regulation of cell death3.91E-03
92GO:0006694: steroid biosynthetic process4.71E-03
93GO:0006122: mitochondrial electron transport, ubiquinol to cytochrome c5.56E-03
94GO:0000122: negative regulation of transcription from RNA polymerase II promoter5.56E-03
95GO:0010038: response to metal ion5.56E-03
96GO:0009610: response to symbiotic fungus5.56E-03
97GO:0006914: autophagy5.57E-03
98GO:0071805: potassium ion transmembrane transport5.92E-03
99GO:0009850: auxin metabolic process6.46E-03
100GO:0006605: protein targeting6.46E-03
101GO:0009615: response to virus6.65E-03
102GO:0009788: negative regulation of abscisic acid-activated signaling pathway7.04E-03
103GO:0010497: plasmodesmata-mediated intercellular transport7.41E-03
104GO:0010204: defense response signaling pathway, resistance gene-independent7.41E-03
105GO:0006906: vesicle fusion7.43E-03
106GO:0009051: pentose-phosphate shunt, oxidative branch8.41E-03
107GO:0090333: regulation of stomatal closure8.41E-03
108GO:0007338: single fertilization8.41E-03
109GO:0090332: stomatal closure9.46E-03
110GO:0030042: actin filament depolymerization9.46E-03
111GO:2000280: regulation of root development9.46E-03
112GO:0048268: clathrin coat assembly9.46E-03
113GO:0048354: mucilage biosynthetic process involved in seed coat development9.46E-03
114GO:0010380: regulation of chlorophyll biosynthetic process9.46E-03
115GO:0051453: regulation of intracellular pH9.46E-03
116GO:0048527: lateral root development1.01E-02
117GO:0019538: protein metabolic process1.05E-02
118GO:0010215: cellulose microfibril organization1.05E-02
119GO:0000272: polysaccharide catabolic process1.17E-02
120GO:0048229: gametophyte development1.17E-02
121GO:0030148: sphingolipid biosynthetic process1.17E-02
122GO:0006839: mitochondrial transport1.26E-02
123GO:0008152: metabolic process1.27E-02
124GO:0045037: protein import into chloroplast stroma1.29E-02
125GO:0071365: cellular response to auxin stimulus1.29E-02
126GO:0006897: endocytosis1.31E-02
127GO:0010102: lateral root morphogenesis1.41E-02
128GO:0006006: glucose metabolic process1.41E-02
129GO:0055046: microgametogenesis1.41E-02
130GO:0000209: protein polyubiquitination1.49E-02
131GO:0009737: response to abscisic acid1.51E-02
132GO:0034605: cellular response to heat1.53E-02
133GO:0007034: vacuolar transport1.53E-02
134GO:0010540: basipetal auxin transport1.53E-02
135GO:0009266: response to temperature stimulus1.53E-02
136GO:0007031: peroxisome organization1.66E-02
137GO:0007033: vacuole organization1.66E-02
138GO:0009225: nucleotide-sugar metabolic process1.66E-02
139GO:0031347: regulation of defense response1.73E-02
140GO:0042787: protein ubiquitination involved in ubiquitin-dependent protein catabolic process1.73E-02
141GO:0034976: response to endoplasmic reticulum stress1.80E-02
142GO:0009863: salicylic acid mediated signaling pathway1.93E-02
143GO:0030150: protein import into mitochondrial matrix1.93E-02
144GO:0006813: potassium ion transport1.93E-02
145GO:0005992: trehalose biosynthetic process1.93E-02
146GO:0010073: meristem maintenance2.07E-02
147GO:0009269: response to desiccation2.22E-02
148GO:0006952: defense response2.32E-02
149GO:0009814: defense response, incompatible interaction2.37E-02
150GO:0016226: iron-sulfur cluster assembly2.37E-02
151GO:0007005: mitochondrion organization2.37E-02
152GO:0071456: cellular response to hypoxia2.37E-02
153GO:0030245: cellulose catabolic process2.37E-02
154GO:0009620: response to fungus2.51E-02
155GO:0009411: response to UV2.52E-02
156GO:0071369: cellular response to ethylene stimulus2.52E-02
157GO:0010227: floral organ abscission2.52E-02
158GO:0006012: galactose metabolic process2.52E-02
159GO:0042127: regulation of cell proliferation2.67E-02
160GO:0019722: calcium-mediated signaling2.67E-02
161GO:0009561: megagametogenesis2.67E-02
162GO:0010089: xylem development2.67E-02
163GO:0070417: cellular response to cold2.83E-02
164GO:0042147: retrograde transport, endosome to Golgi2.83E-02
165GO:0018105: peptidyl-serine phosphorylation2.83E-02
166GO:0000413: protein peptidyl-prolyl isomerization2.99E-02
167GO:0010087: phloem or xylem histogenesis2.99E-02
168GO:0045454: cell redox homeostasis3.04E-02
169GO:0006885: regulation of pH3.16E-02
170GO:0045489: pectin biosynthetic process3.16E-02
171GO:0071472: cellular response to salt stress3.16E-02
172GO:0010182: sugar mediated signaling pathway3.16E-02
173GO:0048544: recognition of pollen3.32E-02
174GO:0006814: sodium ion transport3.32E-02
175GO:0006869: lipid transport3.41E-02
176GO:0006623: protein targeting to vacuole3.49E-02
177GO:0009749: response to glucose3.49E-02
178GO:0007165: signal transduction3.63E-02
179GO:0055085: transmembrane transport3.66E-02
180GO:0071554: cell wall organization or biogenesis3.67E-02
181GO:0006891: intra-Golgi vesicle-mediated transport3.67E-02
182GO:0002229: defense response to oomycetes3.67E-02
183GO:0010193: response to ozone3.67E-02
184GO:0006457: protein folding3.76E-02
185GO:0032502: developmental process3.84E-02
186GO:0009630: gravitropism3.84E-02
187GO:0009751: response to salicylic acid3.87E-02
188GO:0042744: hydrogen peroxide catabolic process3.91E-02
189GO:0006629: lipid metabolic process3.94E-02
190GO:0030163: protein catabolic process4.02E-02
191GO:0006464: cellular protein modification process4.20E-02
192GO:0009567: double fertilization forming a zygote and endosperm4.20E-02
193GO:0006904: vesicle docking involved in exocytosis4.39E-02
194GO:0001666: response to hypoxia4.76E-02
195GO:0055114: oxidation-reduction process4.77E-02
RankGO TermAdjusted P value
1GO:0010290: chlorophyll catabolite transmembrane transporter activity0.00E+00
2GO:0015431: glutathione S-conjugate-exporting ATPase activity0.00E+00
3GO:0005212: structural constituent of eye lens0.00E+00
4GO:1990482: sphingolipid alpha-glucuronosyltransferase activity0.00E+00
5GO:0102983: xylogalacturonan beta-1,3-xylosyltransferase activity0.00E+00
6GO:0016639: oxidoreductase activity, acting on the CH-NH2 group of donors, NAD or NADP as acceptor0.00E+00
7GO:0016034: maleylacetoacetate isomerase activity0.00E+00
8GO:0018580: nitronate monooxygenase activity0.00E+00
9GO:0033759: flavone synthase activity0.00E+00
10GO:0005496: steroid binding1.59E-06
11GO:0019779: Atg8 activating enzyme activity5.92E-06
12GO:0004364: glutathione transferase activity3.47E-05
13GO:0004662: CAAX-protein geranylgeranyltransferase activity3.63E-04
14GO:0047760: butyrate-CoA ligase activity3.63E-04
15GO:0019786: Atg8-specific protease activity3.63E-04
16GO:0004649: poly(ADP-ribose) glycohydrolase activity3.63E-04
17GO:0010179: IAA-Ala conjugate hydrolase activity3.63E-04
18GO:0003987: acetate-CoA ligase activity3.63E-04
19GO:0015927: trehalase activity3.63E-04
20GO:0004714: transmembrane receptor protein tyrosine kinase activity4.01E-04
21GO:0008970: phosphatidylcholine 1-acylhydrolase activity4.91E-04
22GO:0008142: oxysterol binding4.91E-04
23GO:0022821: potassium ion antiporter activity7.89E-04
24GO:0050403: trans-zeatin O-beta-D-glucosyltransferase activity7.89E-04
25GO:0050502: cis-zeatin O-beta-D-glucosyltransferase activity7.89E-04
26GO:0034432: bis(5'-adenosyl)-pentaphosphatase activity7.89E-04
27GO:1990585: hydroxyproline O-arabinosyltransferase activity7.89E-04
28GO:0000774: adenyl-nucleotide exchange factor activity7.89E-04
29GO:0032934: sterol binding7.89E-04
30GO:0045140: inositol phosphoceramide synthase activity7.89E-04
31GO:0004385: guanylate kinase activity7.89E-04
32GO:0050736: O-malonyltransferase activity7.89E-04
33GO:0032791: lead ion binding7.89E-04
34GO:0052739: phosphatidylserine 1-acylhydrolase activity7.89E-04
35GO:0052740: 1-acyl-2-lysophosphatidylserine acylhydrolase activity7.89E-04
36GO:0004617: phosphoglycerate dehydrogenase activity7.89E-04
37GO:0015020: glucuronosyltransferase activity8.10E-04
38GO:0004568: chitinase activity8.10E-04
39GO:0080044: quercetin 7-O-glucosyltransferase activity8.51E-04
40GO:0080043: quercetin 3-O-glucosyltransferase activity8.51E-04
41GO:0015386: potassium:proton antiporter activity9.32E-04
42GO:0005515: protein binding1.04E-03
43GO:0042409: caffeoyl-CoA O-methyltransferase activity1.28E-03
44GO:0003854: 3-beta-hydroxy-delta5-steroid dehydrogenase activity1.28E-03
45GO:0003955: NAD(P)H dehydrogenase (quinone) activity1.28E-03
46GO:0016595: glutamate binding1.28E-03
47GO:0005096: GTPase activator activity1.31E-03
48GO:0004190: aspartic-type endopeptidase activity1.52E-03
49GO:0004416: hydroxyacylglutathione hydrolase activity1.84E-03
50GO:0022890: inorganic cation transmembrane transporter activity1.84E-03
51GO:0010178: IAA-amino acid conjugate hydrolase activity1.84E-03
52GO:0017077: oxidative phosphorylation uncoupler activity1.84E-03
53GO:0051087: chaperone binding2.07E-03
54GO:0035251: UDP-glucosyltransferase activity2.27E-03
55GO:0004607: phosphatidylcholine-sterol O-acyltransferase activity2.47E-03
56GO:0019776: Atg8 ligase activity2.47E-03
57GO:0000062: fatty-acyl-CoA binding2.47E-03
58GO:0004301: epoxide hydrolase activity2.47E-03
59GO:0004930: G-protein coupled receptor activity2.47E-03
60GO:0050373: UDP-arabinose 4-epimerase activity2.47E-03
61GO:0004345: glucose-6-phosphate dehydrogenase activity2.47E-03
62GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor2.47E-03
63GO:0008194: UDP-glycosyltransferase activity2.65E-03
64GO:0008374: O-acyltransferase activity3.16E-03
65GO:0017137: Rab GTPase binding3.16E-03
66GO:0005471: ATP:ADP antiporter activity3.16E-03
67GO:0070696: transmembrane receptor protein serine/threonine kinase binding3.16E-03
68GO:0047714: galactolipase activity3.91E-03
69GO:0016208: AMP binding3.91E-03
70GO:0035252: UDP-xylosyltransferase activity3.91E-03
71GO:0015299: solute:proton antiporter activity4.00E-03
72GO:0004601: peroxidase activity4.36E-03
73GO:0102391: decanoate--CoA ligase activity4.71E-03
74GO:0003978: UDP-glucose 4-epimerase activity4.71E-03
75GO:0051920: peroxiredoxin activity4.71E-03
76GO:0015385: sodium:proton antiporter activity5.24E-03
77GO:0008320: protein transmembrane transporter activity5.56E-03
78GO:0043295: glutathione binding5.56E-03
79GO:0004467: long-chain fatty acid-CoA ligase activity5.56E-03
80GO:0016791: phosphatase activity5.57E-03
81GO:0052747: sinapyl alcohol dehydrogenase activity6.46E-03
82GO:0005544: calcium-dependent phospholipid binding6.46E-03
83GO:0004033: aldo-keto reductase (NADP) activity6.46E-03
84GO:0016209: antioxidant activity6.46E-03
85GO:0016758: transferase activity, transferring hexosyl groups6.80E-03
86GO:0004721: phosphoprotein phosphatase activity7.84E-03
87GO:0004806: triglyceride lipase activity7.84E-03
88GO:0004743: pyruvate kinase activity9.46E-03
89GO:0030955: potassium ion binding9.46E-03
90GO:0030145: manganese ion binding1.01E-02
91GO:0004713: protein tyrosine kinase activity1.05E-02
92GO:0004805: trehalose-phosphatase activity1.05E-02
93GO:0008171: O-methyltransferase activity1.05E-02
94GO:0005545: 1-phosphatidylinositol binding1.05E-02
95GO:0008047: enzyme activator activity1.05E-02
96GO:0008794: arsenate reductase (glutaredoxin) activity1.17E-02
97GO:0008559: xenobiotic-transporting ATPase activity1.17E-02
98GO:0000149: SNARE binding1.21E-02
99GO:0045551: cinnamyl-alcohol dehydrogenase activity1.29E-02
100GO:0005484: SNAP receptor activity1.43E-02
101GO:0005198: structural molecule activity1.61E-02
102GO:0008061: chitin binding1.66E-02
103GO:0004725: protein tyrosine phosphatase activity1.80E-02
104GO:0001046: core promoter sequence-specific DNA binding1.93E-02
105GO:0051536: iron-sulfur cluster binding1.93E-02
106GO:0015079: potassium ion transmembrane transporter activity2.07E-02
107GO:0016887: ATPase activity2.11E-02
108GO:0008810: cellulase activity2.52E-02
109GO:0003756: protein disulfide isomerase activity2.67E-02
110GO:0005451: monovalent cation:proton antiporter activity2.99E-02
111GO:0030276: clathrin binding3.16E-02
112GO:0010181: FMN binding3.32E-02
113GO:0004722: protein serine/threonine phosphatase activity3.41E-02
114GO:0016787: hydrolase activity3.82E-02
115GO:0003924: GTPase activity3.94E-02
116GO:0008565: protein transporter activity4.11E-02
117GO:0005507: copper ion binding4.31E-02
118GO:0016722: oxidoreductase activity, oxidizing metal ions4.39E-02
119GO:0008237: metallopeptidase activity4.39E-02
120GO:0004842: ubiquitin-protein transferase activity4.47E-02
121GO:0016413: O-acetyltransferase activity4.57E-02
122GO:0016597: amino acid binding4.57E-02
123GO:0051213: dioxygenase activity4.76E-02
124GO:0016301: kinase activity4.82E-02
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Gene type



Gene DE type