Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT4G38400

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:1905421: regulation of plant organ morphogenesis0.00E+00
2GO:0010059: positive regulation of atrichoblast fate specification0.00E+00
3GO:0030155: regulation of cell adhesion0.00E+00
4GO:0032194: ubiquinone biosynthetic process via 3,4-dihydroxy-5-polyprenylbenzoate0.00E+00
5GO:0018131: oxazole or thiazole biosynthetic process0.00E+00
6GO:0090071: negative regulation of ribosome biogenesis0.00E+00
7GO:1903224: regulation of endodermal cell differentiation0.00E+00
8GO:0006003: fructose 2,6-bisphosphate metabolic process0.00E+00
9GO:0045184: establishment of protein localization0.00E+00
10GO:0006399: tRNA metabolic process0.00E+00
11GO:0042793: transcription from plastid promoter2.45E-10
12GO:0009658: chloroplast organization7.34E-10
13GO:0009451: RNA modification2.59E-07
14GO:0009793: embryo development ending in seed dormancy2.43E-06
15GO:0010020: chloroplast fission8.29E-06
16GO:0042026: protein refolding1.07E-05
17GO:0009657: plastid organization3.54E-05
18GO:0009790: embryo development1.31E-04
19GO:0006418: tRNA aminoacylation for protein translation3.32E-04
20GO:0006458: 'de novo' protein folding3.75E-04
21GO:0006730: one-carbon metabolic process4.24E-04
22GO:0006436: tryptophanyl-tRNA aminoacylation4.78E-04
23GO:0006419: alanyl-tRNA aminoacylation4.78E-04
24GO:0006427: histidyl-tRNA aminoacylation4.78E-04
25GO:0042659: regulation of cell fate specification4.78E-04
26GO:0046901: tetrahydrofolylpolyglutamate biosynthetic process4.78E-04
27GO:0070509: calcium ion import4.78E-04
28GO:0019294: keto-3-deoxy-D-manno-octulosonic acid biosynthetic process4.78E-04
29GO:0072684: mitochondrial tRNA 3'-trailer cleavage, endonucleolytic4.78E-04
30GO:0010063: positive regulation of trichoblast fate specification4.78E-04
31GO:0005980: glycogen catabolic process4.78E-04
32GO:0006438: valyl-tRNA aminoacylation4.78E-04
33GO:0090558: plant epidermis development4.78E-04
34GO:0010480: microsporocyte differentiation4.78E-04
35GO:0042371: vitamin K biosynthetic process4.78E-04
36GO:0035987: endodermal cell differentiation4.78E-04
37GO:0043609: regulation of carbon utilization4.78E-04
38GO:0048437: floral organ development4.82E-04
39GO:0000105: histidine biosynthetic process6.01E-04
40GO:0000373: Group II intron splicing8.76E-04
41GO:0001682: tRNA 5'-leader removal1.03E-03
42GO:0006420: arginyl-tRNA aminoacylation1.03E-03
43GO:1900871: chloroplast mRNA modification1.03E-03
44GO:0060359: response to ammonium ion1.03E-03
45GO:0048255: mRNA stabilization1.03E-03
46GO:0018026: peptidyl-lysine monomethylation1.03E-03
47GO:1902326: positive regulation of chlorophyll biosynthetic process1.03E-03
48GO:0009662: etioplast organization1.03E-03
49GO:0042325: regulation of phosphorylation1.03E-03
50GO:0009220: pyrimidine ribonucleotide biosynthetic process1.03E-03
51GO:0015712: hexose phosphate transport1.03E-03
52GO:1904143: positive regulation of carotenoid biosynthetic process1.03E-03
53GO:0080009: mRNA methylation1.03E-03
54GO:0010027: thylakoid membrane organization1.49E-03
55GO:0009416: response to light stimulus1.59E-03
56GO:0045037: protein import into chloroplast stroma1.59E-03
57GO:0043157: response to cation stress1.68E-03
58GO:0005977: glycogen metabolic process1.68E-03
59GO:0034414: tRNA 3'-trailer cleavage, endonucleolytic1.68E-03
60GO:0048281: inflorescence morphogenesis1.68E-03
61GO:0090708: specification of plant organ axis polarity1.68E-03
62GO:0006000: fructose metabolic process1.68E-03
63GO:0035436: triose phosphate transmembrane transport1.68E-03
64GO:0042780: tRNA 3'-end processing1.68E-03
65GO:0001578: microtubule bundle formation1.68E-03
66GO:1902476: chloride transmembrane transport2.44E-03
67GO:0010071: root meristem specification2.44E-03
68GO:0051085: chaperone mediated protein folding requiring cofactor2.44E-03
69GO:0010306: rhamnogalacturonan II biosynthetic process2.44E-03
70GO:0010239: chloroplast mRNA processing2.44E-03
71GO:0044211: CTP salvage2.44E-03
72GO:0046739: transport of virus in multicellular host2.44E-03
73GO:0019048: modulation by virus of host morphology or physiology2.44E-03
74GO:2000904: regulation of starch metabolic process2.44E-03
75GO:0051289: protein homotetramerization2.44E-03
76GO:0006164: purine nucleotide biosynthetic process2.44E-03
77GO:0031048: chromatin silencing by small RNA2.44E-03
78GO:0043572: plastid fission2.44E-03
79GO:0010148: transpiration2.44E-03
80GO:2001141: regulation of RNA biosynthetic process2.44E-03
81GO:0016556: mRNA modification2.44E-03
82GO:0006508: proteolysis2.77E-03
83GO:0005992: trehalose biosynthetic process2.82E-03
84GO:0051302: regulation of cell division3.12E-03
85GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway3.18E-03
86GO:0051322: anaphase3.28E-03
87GO:0030104: water homeostasis3.28E-03
88GO:0046656: folic acid biosynthetic process3.28E-03
89GO:0006021: inositol biosynthetic process3.28E-03
90GO:0044205: 'de novo' UMP biosynthetic process3.28E-03
91GO:0051567: histone H3-K9 methylation3.28E-03
92GO:0015713: phosphoglycerate transport3.28E-03
93GO:0010021: amylopectin biosynthetic process3.28E-03
94GO:0044206: UMP salvage3.28E-03
95GO:0061077: chaperone-mediated protein folding3.43E-03
96GO:0016998: cell wall macromolecule catabolic process3.43E-03
97GO:0007005: mitochondrion organization3.76E-03
98GO:0009107: lipoate biosynthetic process4.21E-03
99GO:0010158: abaxial cell fate specification4.21E-03
100GO:0010236: plastoquinone biosynthetic process4.21E-03
101GO:0048497: maintenance of floral organ identity4.21E-03
102GO:0010405: arabinogalactan protein metabolic process5.21E-03
103GO:0009959: negative gravitropism5.21E-03
104GO:0009913: epidermal cell differentiation5.21E-03
105GO:0006655: phosphatidylglycerol biosynthetic process5.21E-03
106GO:0006086: acetyl-CoA biosynthetic process from pyruvate5.21E-03
107GO:0016458: gene silencing5.21E-03
108GO:0006206: pyrimidine nucleobase metabolic process5.21E-03
109GO:0050665: hydrogen peroxide biosynthetic process5.21E-03
110GO:0018258: protein O-linked glycosylation via hydroxyproline5.21E-03
111GO:0009228: thiamine biosynthetic process5.21E-03
112GO:0008033: tRNA processing5.23E-03
113GO:0048868: pollen tube development5.64E-03
114GO:2000067: regulation of root morphogenesis6.28E-03
115GO:0042372: phylloquinone biosynthetic process6.28E-03
116GO:0009082: branched-chain amino acid biosynthetic process6.28E-03
117GO:0017148: negative regulation of translation6.28E-03
118GO:0009942: longitudinal axis specification6.28E-03
119GO:0046654: tetrahydrofolate biosynthetic process6.28E-03
120GO:0009099: valine biosynthetic process6.28E-03
121GO:0030488: tRNA methylation6.28E-03
122GO:1901259: chloroplast rRNA processing6.28E-03
123GO:0009854: oxidative photosynthetic carbon pathway6.28E-03
124GO:0019252: starch biosynthetic process6.51E-03
125GO:0006955: immune response7.43E-03
126GO:0048528: post-embryonic root development7.43E-03
127GO:0007050: cell cycle arrest7.43E-03
128GO:0009772: photosynthetic electron transport in photosystem II7.43E-03
129GO:0006821: chloride transport7.43E-03
130GO:0070370: cellular heat acclimation7.43E-03
131GO:0010444: guard mother cell differentiation7.43E-03
132GO:0010050: vegetative phase change7.43E-03
133GO:0006400: tRNA modification7.43E-03
134GO:0009396: folic acid-containing compound biosynthetic process7.43E-03
135GO:0006207: 'de novo' pyrimidine nucleobase biosynthetic process7.43E-03
136GO:0010103: stomatal complex morphogenesis7.43E-03
137GO:0009630: gravitropism7.45E-03
138GO:0010583: response to cyclopentenone7.45E-03
139GO:0006457: protein folding8.56E-03
140GO:0048564: photosystem I assembly8.65E-03
141GO:0001522: pseudouridine synthesis8.65E-03
142GO:0009850: auxin metabolic process8.65E-03
143GO:0006353: DNA-templated transcription, termination8.65E-03
144GO:0070413: trehalose metabolism in response to stress8.65E-03
145GO:0055075: potassium ion homeostasis8.65E-03
146GO:0001558: regulation of cell growth9.94E-03
147GO:0006002: fructose 6-phosphate metabolic process9.94E-03
148GO:0071482: cellular response to light stimulus9.94E-03
149GO:0009827: plant-type cell wall modification9.94E-03
150GO:0009097: isoleucine biosynthetic process9.94E-03
151GO:0006526: arginine biosynthetic process9.94E-03
152GO:0010204: defense response signaling pathway, resistance gene-independent9.94E-03
153GO:0010497: plasmodesmata-mediated intercellular transport9.94E-03
154GO:0007389: pattern specification process9.94E-03
155GO:0000902: cell morphogenesis1.13E-02
156GO:0006974: cellular response to DNA damage stimulus1.13E-02
157GO:0006098: pentose-phosphate shunt1.13E-02
158GO:0010411: xyloglucan metabolic process1.19E-02
159GO:2000280: regulation of root development1.27E-02
160GO:0009638: phototropism1.27E-02
161GO:0009098: leucine biosynthetic process1.27E-02
162GO:0009862: systemic acquired resistance, salicylic acid mediated signaling pathway1.27E-02
163GO:0048481: plant ovule development1.32E-02
164GO:0045036: protein targeting to chloroplast1.42E-02
165GO:0006259: DNA metabolic process1.42E-02
166GO:0006535: cysteine biosynthetic process from serine1.42E-02
167GO:0030422: production of siRNA involved in RNA interference1.42E-02
168GO:0010015: root morphogenesis1.57E-02
169GO:0006265: DNA topological change1.57E-02
170GO:0009089: lysine biosynthetic process via diaminopimelate1.57E-02
171GO:0006352: DNA-templated transcription, initiation1.57E-02
172GO:0048229: gametophyte development1.57E-02
173GO:0006790: sulfur compound metabolic process1.73E-02
174GO:0005983: starch catabolic process1.73E-02
175GO:0016024: CDP-diacylglycerol biosynthetic process1.73E-02
176GO:0010582: floral meristem determinacy1.73E-02
177GO:0050826: response to freezing1.90E-02
178GO:0010075: regulation of meristem growth1.90E-02
179GO:0006094: gluconeogenesis1.90E-02
180GO:2000012: regulation of auxin polar transport1.90E-02
181GO:0009785: blue light signaling pathway1.90E-02
182GO:0009691: cytokinin biosynthetic process1.90E-02
183GO:0009934: regulation of meristem structural organization2.07E-02
184GO:0010207: photosystem II assembly2.07E-02
185GO:0010114: response to red light2.17E-02
186GO:0046854: phosphatidylinositol phosphorylation2.24E-02
187GO:0090351: seedling development2.24E-02
188GO:0070588: calcium ion transmembrane transport2.24E-02
189GO:0042546: cell wall biogenesis2.26E-02
190GO:0006833: water transport2.42E-02
191GO:0019344: cysteine biosynthetic process2.61E-02
192GO:0009116: nucleoside metabolic process2.61E-02
193GO:0009944: polarity specification of adaxial/abaxial axis2.61E-02
194GO:0009664: plant-type cell wall organization2.73E-02
195GO:0006364: rRNA processing2.93E-02
196GO:0006306: DNA methylation2.99E-02
197GO:0015992: proton transport2.99E-02
198GO:0051603: proteolysis involved in cellular protein catabolic process3.04E-02
199GO:0016226: iron-sulfur cluster assembly3.19E-02
200GO:0009831: plant-type cell wall modification involved in multidimensional cell growth3.40E-02
201GO:0010082: regulation of root meristem growth3.40E-02
202GO:0001944: vasculature development3.40E-02
203GO:0006096: glycolytic process3.47E-02
204GO:0009409: response to cold3.56E-02
205GO:0048367: shoot system development3.58E-02
206GO:0048316: seed development3.58E-02
207GO:0042127: regulation of cell proliferation3.60E-02
208GO:0009306: protein secretion3.60E-02
209GO:0048653: anther development4.03E-02
210GO:0000226: microtubule cytoskeleton organization4.03E-02
211GO:0009553: embryo sac development4.04E-02
212GO:0080167: response to karrikin4.08E-02
213GO:0006342: chromatin silencing4.25E-02
214GO:0009741: response to brassinosteroid4.25E-02
215GO:0006662: glycerol ether metabolic process4.25E-02
216GO:0010305: leaf vascular tissue pattern formation4.25E-02
217GO:0009742: brassinosteroid mediated signaling pathway4.41E-02
218GO:0007059: chromosome segregation4.48E-02
219GO:0009646: response to absence of light4.48E-02
220GO:0048544: recognition of pollen4.48E-02
221GO:0009851: auxin biosynthetic process4.71E-02
222GO:0048825: cotyledon development4.71E-02
223GO:0008654: phospholipid biosynthetic process4.71E-02
224GO:0015979: photosynthesis4.79E-02
RankGO TermAdjusted P value
1GO:0004358: glutamate N-acetyltransferase activity0.00E+00
2GO:0070009: serine-type aminopeptidase activity0.00E+00
3GO:0052834: inositol monophosphate phosphatase activity0.00E+00
4GO:0003937: IMP cyclohydrolase activity0.00E+00
5GO:0004331: fructose-2,6-bisphosphate 2-phosphatase activity0.00E+00
6GO:0004588: orotate phosphoribosyltransferase activity0.00E+00
7GO:0004590: orotidine-5'-phosphate decarboxylase activity0.00E+00
8GO:0003873: 6-phosphofructo-2-kinase activity0.00E+00
9GO:0010303: limit dextrinase activity0.00E+00
10GO:0004635: phosphoribosyl-AMP cyclohydrolase activity0.00E+00
11GO:0004643: phosphoribosylaminoimidazolecarboxamide formyltransferase activity0.00E+00
12GO:0046428: 1,4-dihydroxy-2-naphthoate octaprenyltransferase activity0.00E+00
13GO:0004056: argininosuccinate lyase activity0.00E+00
14GO:0051060: pullulanase activity0.00E+00
15GO:0004401: histidinol-phosphatase activity0.00E+00
16GO:0004636: phosphoribosyl-ATP diphosphatase activity0.00E+00
17GO:0004519: endonuclease activity3.18E-06
18GO:0004326: tetrahydrofolylpolyglutamate synthase activity1.01E-05
19GO:0004176: ATP-dependent peptidase activity2.58E-05
20GO:0003723: RNA binding6.45E-05
21GO:0005524: ATP binding7.24E-05
22GO:0001872: (1->3)-beta-D-glucan binding7.39E-05
23GO:0044183: protein binding involved in protein folding1.02E-04
24GO:0008237: metallopeptidase activity1.63E-04
25GO:0016773: phosphotransferase activity, alcohol group as acceptor1.98E-04
26GO:0004556: alpha-amylase activity2.80E-04
27GO:0051082: unfolded protein binding3.55E-04
28GO:0010347: L-galactose-1-phosphate phosphatase activity4.78E-04
29GO:0005227: calcium activated cation channel activity4.78E-04
30GO:0008184: glycogen phosphorylase activity4.78E-04
31GO:0004645: phosphorylase activity4.78E-04
32GO:0004821: histidine-tRNA ligase activity4.78E-04
33GO:0042834: peptidoglycan binding4.78E-04
34GO:0008676: 3-deoxy-8-phosphooctulonate synthase activity4.78E-04
35GO:0052906: tRNA (guanine(37)-N(1))-methyltransferase activity4.78E-04
36GO:0016422: mRNA (2'-O-methyladenosine-N6-)-methyltransferase activity4.78E-04
37GO:0004156: dihydropteroate synthase activity4.78E-04
38GO:0003848: 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase activity4.78E-04
39GO:0004813: alanine-tRNA ligase activity4.78E-04
40GO:0004832: valine-tRNA ligase activity4.78E-04
41GO:0030785: [ribulose-bisphosphate carboxylase]-lysine N-methyltransferase activity4.78E-04
42GO:0004830: tryptophan-tRNA ligase activity4.78E-04
43GO:0033946: xyloglucan-specific endo-beta-1,4-glucanase activity4.78E-04
44GO:0010285: L,L-diaminopimelate aminotransferase activity4.78E-04
45GO:0052381: tRNA dimethylallyltransferase activity4.78E-04
46GO:0004160: dihydroxy-acid dehydratase activity4.78E-04
47GO:0004812: aminoacyl-tRNA ligase activity5.89E-04
48GO:0043621: protein self-association7.67E-04
49GO:0003852: 2-isopropylmalate synthase activity1.03E-03
50GO:0004814: arginine-tRNA ligase activity1.03E-03
51GO:0016415: octanoyltransferase activity1.03E-03
52GO:0004047: aminomethyltransferase activity1.03E-03
53GO:0052832: inositol monophosphate 3-phosphatase activity1.03E-03
54GO:0019156: isoamylase activity1.03E-03
55GO:0000774: adenyl-nucleotide exchange factor activity1.03E-03
56GO:0008934: inositol monophosphate 1-phosphatase activity1.03E-03
57GO:0052833: inositol monophosphate 4-phosphatase activity1.03E-03
58GO:0000179: rRNA (adenine-N6,N6-)-dimethyltransferase activity1.03E-03
59GO:0017118: lipoyltransferase activity1.03E-03
60GO:0004805: trehalose-phosphatase activity1.20E-03
61GO:0071917: triose-phosphate transmembrane transporter activity1.68E-03
62GO:0046524: sucrose-phosphate synthase activity1.68E-03
63GO:0070330: aromatase activity1.68E-03
64GO:0017150: tRNA dihydrouridine synthase activity1.68E-03
65GO:0042781: 3'-tRNA processing endoribonuclease activity1.68E-03
66GO:0004222: metalloendopeptidase activity2.37E-03
67GO:0052853: long-chain-(S)-2-hydroxy-long-chain-acid oxidase activity2.44E-03
68GO:0052854: medium-chain-(S)-2-hydroxy-acid oxidase activity2.44E-03
69GO:0004742: dihydrolipoyllysine-residue acetyltransferase activity2.44E-03
70GO:0009678: hydrogen-translocating pyrophosphatase activity2.44E-03
71GO:0019201: nucleotide kinase activity2.44E-03
72GO:0052852: very-long-chain-(S)-2-hydroxy-acid oxidase activity2.44E-03
73GO:0035197: siRNA binding2.44E-03
74GO:0016851: magnesium chelatase activity2.44E-03
75GO:0043023: ribosomal large subunit binding2.44E-03
76GO:0016279: protein-lysine N-methyltransferase activity3.28E-03
77GO:0001053: plastid sigma factor activity3.28E-03
78GO:0004845: uracil phosphoribosyltransferase activity3.28E-03
79GO:0016836: hydro-lyase activity3.28E-03
80GO:0016987: sigma factor activity3.28E-03
81GO:0005253: anion channel activity3.28E-03
82GO:0042277: peptide binding3.28E-03
83GO:0019199: transmembrane receptor protein kinase activity3.28E-03
84GO:0008891: glycolate oxidase activity3.28E-03
85GO:0015120: phosphoglycerate transmembrane transporter activity3.28E-03
86GO:0004659: prenyltransferase activity3.28E-03
87GO:0005275: amine transmembrane transporter activity4.21E-03
88GO:0018685: alkane 1-monooxygenase activity4.21E-03
89GO:0070696: transmembrane receptor protein serine/threonine kinase binding4.21E-03
90GO:0005247: voltage-gated chloride channel activity5.21E-03
91GO:2001070: starch binding5.21E-03
92GO:0004605: phosphatidate cytidylyltransferase activity5.21E-03
93GO:1990714: hydroxyproline O-galactosyltransferase activity5.21E-03
94GO:0004332: fructose-bisphosphate aldolase activity5.21E-03
95GO:0004526: ribonuclease P activity5.21E-03
96GO:0004124: cysteine synthase activity6.28E-03
97GO:0008195: phosphatidate phosphatase activity6.28E-03
98GO:0004017: adenylate kinase activity6.28E-03
99GO:0004849: uridine kinase activity6.28E-03
100GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity6.28E-03
101GO:0016762: xyloglucan:xyloglucosyl transferase activity6.97E-03
102GO:0004427: inorganic diphosphatase activity7.43E-03
103GO:0043022: ribosome binding8.65E-03
104GO:0016597: amino acid binding9.55E-03
105GO:0003918: DNA topoisomerase type II (ATP-hydrolyzing) activity9.94E-03
106GO:0016798: hydrolase activity, acting on glycosyl bonds1.19E-02
107GO:0030247: polysaccharide binding1.19E-02
108GO:0019843: rRNA binding1.20E-02
109GO:0009672: auxin:proton symporter activity1.27E-02
110GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity1.32E-02
111GO:0016829: lyase activity1.33E-02
112GO:0005525: GTP binding1.36E-02
113GO:0004521: endoribonuclease activity1.73E-02
114GO:0000049: tRNA binding1.73E-02
115GO:0003993: acid phosphatase activity1.76E-02
116GO:0004089: carbonate dehydratase activity1.90E-02
117GO:0031072: heat shock protein binding1.90E-02
118GO:0005262: calcium channel activity1.90E-02
119GO:0019888: protein phosphatase regulator activity1.90E-02
120GO:0009982: pseudouridine synthase activity1.90E-02
121GO:0004565: beta-galactosidase activity1.90E-02
122GO:0010329: auxin efflux transmembrane transporter activity1.90E-02
123GO:0051539: 4 iron, 4 sulfur cluster binding1.92E-02
124GO:0003924: GTPase activity2.05E-02
125GO:0004185: serine-type carboxypeptidase activity2.17E-02
126GO:0102336: 3-oxo-arachidoyl-CoA synthase activity2.42E-02
127GO:0102337: 3-oxo-cerotoyl-CoA synthase activity2.42E-02
128GO:0102338: 3-oxo-lignoceronyl-CoA synthase activity2.42E-02
129GO:0051087: chaperone binding2.80E-02
130GO:0005345: purine nucleobase transmembrane transporter activity2.80E-02
131GO:0008408: 3'-5' exonuclease activity2.99E-02
132GO:0033612: receptor serine/threonine kinase binding2.99E-02
133GO:0003964: RNA-directed DNA polymerase activity2.99E-02
134GO:0004650: polygalacturonase activity3.81E-02
135GO:0047134: protein-disulfide reductase activity3.82E-02
136GO:0016887: ATPase activity3.90E-02
137GO:0008536: Ran GTPase binding4.25E-02
138GO:0004527: exonuclease activity4.25E-02
139GO:0004791: thioredoxin-disulfide reductase activity4.48E-02
140GO:0005355: glucose transmembrane transporter activity4.48E-02
141GO:0010181: FMN binding4.48E-02
142GO:0019901: protein kinase binding4.71E-02
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Gene type



Gene DE type