Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT4G37920

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0090322: regulation of superoxide metabolic process0.00E+00
2GO:1903224: regulation of endodermal cell differentiation0.00E+00
3GO:0035884: arabinan biosynthetic process0.00E+00
4GO:0006003: fructose 2,6-bisphosphate metabolic process0.00E+00
5GO:0002103: endonucleolytic cleavage of tetracistronic rRNA transcript (SSU-rRNA, LSU-rRNA, 4.5S-rRNA, 5S-rRNA)0.00E+00
6GO:0045184: establishment of protein localization0.00E+00
7GO:0006399: tRNA metabolic process0.00E+00
8GO:0090615: mitochondrial mRNA processing0.00E+00
9GO:0031222: arabinan catabolic process0.00E+00
10GO:0042794: rRNA transcription from plastid promoter0.00E+00
11GO:0010059: positive regulation of atrichoblast fate specification0.00E+00
12GO:0045014: negative regulation of transcription by glucose0.00E+00
13GO:0032194: ubiquinone biosynthetic process via 3,4-dihydroxy-5-polyprenylbenzoate0.00E+00
14GO:0090627: plant epidermal cell differentiation0.00E+00
15GO:0009606: tropism0.00E+00
16GO:0042793: transcription from plastid promoter1.16E-14
17GO:0009451: RNA modification4.64E-09
18GO:0046620: regulation of organ growth3.01E-08
19GO:0009658: chloroplast organization4.89E-08
20GO:0010569: regulation of double-strand break repair via homologous recombination2.57E-05
21GO:0009734: auxin-activated signaling pathway3.78E-05
22GO:0006518: peptide metabolic process8.23E-05
23GO:0009657: plastid organization1.11E-04
24GO:2000038: regulation of stomatal complex development2.84E-04
25GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway3.00E-04
26GO:0009926: auxin polar transport4.19E-04
27GO:0009828: plant-type cell wall loosening5.00E-04
28GO:0009733: response to auxin5.17E-04
29GO:0009913: epidermal cell differentiation5.88E-04
30GO:1901259: chloroplast rRNA processing7.77E-04
31GO:0080112: seed growth7.81E-04
32GO:0030198: extracellular matrix organization7.81E-04
33GO:0010063: positive regulation of trichoblast fate specification7.81E-04
34GO:0090558: plant epidermis development7.81E-04
35GO:0010480: microsporocyte differentiation7.81E-04
36GO:0090063: positive regulation of microtubule nucleation7.81E-04
37GO:1903866: palisade mesophyll development7.81E-04
38GO:0042371: vitamin K biosynthetic process7.81E-04
39GO:0035987: endodermal cell differentiation7.81E-04
40GO:0043609: regulation of carbon utilization7.81E-04
41GO:0006436: tryptophanyl-tRNA aminoacylation7.81E-04
42GO:0034757: negative regulation of iron ion transport7.81E-04
43GO:0042659: regulation of cell fate specification7.81E-04
44GO:0019294: keto-3-deoxy-D-manno-octulosonic acid biosynthetic process7.81E-04
45GO:1905039: carboxylic acid transmembrane transport7.81E-04
46GO:1905200: gibberellic acid transmembrane transport7.81E-04
47GO:0070509: calcium ion import7.81E-04
48GO:0072684: mitochondrial tRNA 3'-trailer cleavage, endonucleolytic7.81E-04
49GO:0009793: embryo development ending in seed dormancy9.49E-04
50GO:0016998: cell wall macromolecule catabolic process9.67E-04
51GO:0048437: floral organ development9.91E-04
52GO:0006955: immune response9.91E-04
53GO:0006353: DNA-templated transcription, termination1.23E-03
54GO:0007389: pattern specification process1.50E-03
55GO:0048255: mRNA stabilization1.69E-03
56GO:1902326: positive regulation of chlorophyll biosynthetic process1.69E-03
57GO:0010271: regulation of chlorophyll catabolic process1.69E-03
58GO:0018026: peptidyl-lysine monomethylation1.69E-03
59GO:0071497: cellular response to freezing1.69E-03
60GO:0009662: etioplast organization1.69E-03
61GO:1900033: negative regulation of trichome patterning1.69E-03
62GO:0042325: regulation of phosphorylation1.69E-03
63GO:1904143: positive regulation of carotenoid biosynthetic process1.69E-03
64GO:0080009: mRNA methylation1.69E-03
65GO:2000123: positive regulation of stomatal complex development1.69E-03
66GO:0006420: arginyl-tRNA aminoacylation1.69E-03
67GO:0033566: gamma-tubulin complex localization1.69E-03
68GO:0009967: positive regulation of signal transduction1.69E-03
69GO:0060359: response to ammonium ion1.69E-03
70GO:0000373: Group II intron splicing1.81E-03
71GO:1900865: chloroplast RNA modification2.14E-03
72GO:0006535: cysteine biosynthetic process from serine2.50E-03
73GO:0045036: protein targeting to chloroplast2.50E-03
74GO:0006949: syncytium formation2.50E-03
75GO:0006508: proteolysis2.51E-03
76GO:0010583: response to cyclopentenone2.61E-03
77GO:0009790: embryo development2.65E-03
78GO:0042780: tRNA 3'-end processing2.80E-03
79GO:0001578: microtubule bundle formation2.80E-03
80GO:0043157: response to cation stress2.80E-03
81GO:0034414: tRNA 3'-trailer cleavage, endonucleolytic2.80E-03
82GO:0090708: specification of plant organ axis polarity2.80E-03
83GO:0080117: secondary growth2.80E-03
84GO:0044210: 'de novo' CTP biosynthetic process2.80E-03
85GO:0090391: granum assembly2.80E-03
86GO:0006000: fructose metabolic process2.80E-03
87GO:0048229: gametophyte development2.90E-03
88GO:0009416: response to light stimulus2.93E-03
89GO:0009664: plant-type cell wall organization3.00E-03
90GO:0010252: auxin homeostasis3.07E-03
91GO:0045037: protein import into chloroplast stroma3.33E-03
92GO:0010102: lateral root morphogenesis3.79E-03
93GO:0010588: cotyledon vascular tissue pattern formation3.79E-03
94GO:0010027: thylakoid membrane organization3.85E-03
95GO:0046739: transport of virus in multicellular host4.07E-03
96GO:0051289: protein homotetramerization4.07E-03
97GO:0016556: mRNA modification4.07E-03
98GO:2001141: regulation of RNA biosynthetic process4.07E-03
99GO:0010371: regulation of gibberellin biosynthetic process4.07E-03
100GO:1902476: chloride transmembrane transport4.07E-03
101GO:0010071: root meristem specification4.07E-03
102GO:0010239: chloroplast mRNA processing4.07E-03
103GO:0010306: rhamnogalacturonan II biosynthetic process4.07E-03
104GO:0048367: shoot system development4.55E-03
105GO:0080188: RNA-directed DNA methylation4.81E-03
106GO:0048481: plant ovule development5.43E-03
107GO:0006221: pyrimidine nucleotide biosynthetic process5.50E-03
108GO:0006021: inositol biosynthetic process5.50E-03
109GO:0006346: methylation-dependent chromatin silencing5.50E-03
110GO:1901141: regulation of lignin biosynthetic process5.50E-03
111GO:0006479: protein methylation5.50E-03
112GO:0048629: trichome patterning5.50E-03
113GO:1900864: mitochondrial RNA modification5.50E-03
114GO:0042274: ribosomal small subunit biogenesis5.50E-03
115GO:0051322: anaphase5.50E-03
116GO:0030104: water homeostasis5.50E-03
117GO:0046656: folic acid biosynthetic process5.50E-03
118GO:0019344: cysteine biosynthetic process5.97E-03
119GO:0010236: plastoquinone biosynthetic process7.08E-03
120GO:0048497: maintenance of floral organ identity7.08E-03
121GO:0009107: lipoate biosynthetic process7.08E-03
122GO:0032876: negative regulation of DNA endoreduplication7.08E-03
123GO:0030308: negative regulation of cell growth7.08E-03
124GO:0010375: stomatal complex patterning7.08E-03
125GO:0071215: cellular response to abscisic acid stimulus8.71E-03
126GO:0009831: plant-type cell wall modification involved in multidimensional cell growth8.71E-03
127GO:0010315: auxin efflux8.81E-03
128GO:0009643: photosynthetic acclimation8.81E-03
129GO:0018258: protein O-linked glycosylation via hydroxyproline8.81E-03
130GO:0010405: arabinogalactan protein metabolic process8.81E-03
131GO:0010304: PSII associated light-harvesting complex II catabolic process8.81E-03
132GO:0009959: negative gravitropism8.81E-03
133GO:0006655: phosphatidylglycerol biosynthetic process8.81E-03
134GO:1902456: regulation of stomatal opening8.81E-03
135GO:0048831: regulation of shoot system development8.81E-03
136GO:0016554: cytidine to uridine editing8.81E-03
137GO:0010114: response to red light1.02E-02
138GO:0006458: 'de novo' protein folding1.07E-02
139GO:0009942: longitudinal axis specification1.07E-02
140GO:0042026: protein refolding1.07E-02
141GO:0048509: regulation of meristem development1.07E-02
142GO:0046654: tetrahydrofolate biosynthetic process1.07E-02
143GO:0030488: tRNA methylation1.07E-02
144GO:2000037: regulation of stomatal complex patterning1.07E-02
145GO:0010310: regulation of hydrogen peroxide metabolic process1.07E-02
146GO:2000067: regulation of root morphogenesis1.07E-02
147GO:0009955: adaxial/abaxial pattern specification1.07E-02
148GO:0042372: phylloquinone biosynthetic process1.07E-02
149GO:0010087: phloem or xylem histogenesis1.11E-02
150GO:0010305: leaf vascular tissue pattern formation1.20E-02
151GO:0048868: pollen tube development1.20E-02
152GO:0040008: regulation of growth1.24E-02
153GO:0009396: folic acid-containing compound biosynthetic process1.27E-02
154GO:0010103: stomatal complex morphogenesis1.27E-02
155GO:0048528: post-embryonic root development1.27E-02
156GO:0007050: cell cycle arrest1.27E-02
157GO:0009772: photosynthetic electron transport in photosystem II1.27E-02
158GO:0006821: chloride transport1.27E-02
159GO:0015937: coenzyme A biosynthetic process1.27E-02
160GO:0048825: cotyledon development1.39E-02
161GO:0009642: response to light intensity1.48E-02
162GO:0042255: ribosome assembly1.48E-02
163GO:0048766: root hair initiation1.48E-02
164GO:0055075: potassium ion homeostasis1.48E-02
165GO:0000105: histidine biosynthetic process1.48E-02
166GO:0052543: callose deposition in cell wall1.48E-02
167GO:0048564: photosystem I assembly1.48E-02
168GO:0001522: pseudouridine synthesis1.48E-02
169GO:0080156: mitochondrial mRNA modification1.49E-02
170GO:0009739: response to gibberellin1.57E-02
171GO:0032502: developmental process1.59E-02
172GO:0009630: gravitropism1.59E-02
173GO:0010497: plasmodesmata-mediated intercellular transport1.70E-02
174GO:0032544: plastid translation1.70E-02
175GO:0006002: fructose 6-phosphate metabolic process1.70E-02
176GO:0071482: cellular response to light stimulus1.70E-02
177GO:0019430: removal of superoxide radicals1.70E-02
178GO:0048589: developmental growth1.93E-02
179GO:0000902: cell morphogenesis1.93E-02
180GO:0009638: phototropism2.18E-02
181GO:0042761: very long-chain fatty acid biosynthetic process2.18E-02
182GO:2000280: regulation of root development2.18E-02
183GO:0009826: unidimensional cell growth2.42E-02
184GO:0048829: root cap development2.43E-02
185GO:0006396: RNA processing2.43E-02
186GO:0006259: DNA metabolic process2.43E-02
187GO:0031627: telomeric loop formation2.43E-02
188GO:0010411: xyloglucan metabolic process2.55E-02
189GO:0006352: DNA-templated transcription, initiation2.70E-02
190GO:0015770: sucrose transport2.70E-02
191GO:0009750: response to fructose2.70E-02
192GO:0010015: root morphogenesis2.70E-02
193GO:0006265: DNA topological change2.70E-02
194GO:0009089: lysine biosynthetic process via diaminopimelate2.70E-02
195GO:0016024: CDP-diacylglycerol biosynthetic process2.97E-02
196GO:0000160: phosphorelay signal transduction system2.97E-02
197GO:0008361: regulation of cell size2.97E-02
198GO:0006790: sulfur compound metabolic process2.97E-02
199GO:0012501: programmed cell death2.97E-02
200GO:0010152: pollen maturation2.97E-02
201GO:0009785: blue light signaling pathway3.25E-02
202GO:0009691: cytokinin biosynthetic process3.25E-02
203GO:0010075: regulation of meristem growth3.25E-02
204GO:0009845: seed germination3.43E-02
205GO:0006865: amino acid transport3.43E-02
206GO:0010020: chloroplast fission3.55E-02
207GO:0009934: regulation of meristem structural organization3.55E-02
208GO:0010207: photosystem II assembly3.55E-02
209GO:0009901: anther dehiscence3.85E-02
210GO:0070588: calcium ion transmembrane transport3.85E-02
211GO:0046854: phosphatidylinositol phosphorylation3.85E-02
212GO:0006071: glycerol metabolic process4.16E-02
213GO:0006833: water transport4.16E-02
214GO:0000027: ribosomal large subunit assembly4.47E-02
215GO:0080147: root hair cell development4.47E-02
216GO:0042546: cell wall biogenesis4.80E-02
217GO:0010073: meristem maintenance4.80E-02
218GO:0051302: regulation of cell division4.80E-02
219GO:0019953: sexual reproduction4.80E-02
220GO:0006418: tRNA aminoacylation for protein translation4.80E-02
RankGO TermAdjusted P value
1GO:0003873: 6-phosphofructo-2-kinase activity0.00E+00
2GO:0046428: 1,4-dihydroxy-2-naphthoate octaprenyltransferase activity0.00E+00
3GO:0004401: histidinol-phosphatase activity0.00E+00
4GO:0004056: argininosuccinate lyase activity0.00E+00
5GO:0016018: cyclosporin A binding0.00E+00
6GO:0070009: serine-type aminopeptidase activity0.00E+00
7GO:0052834: inositol monophosphate phosphatase activity0.00E+00
8GO:0005201: extracellular matrix structural constituent0.00E+00
9GO:0071633: dihydroceramidase activity0.00E+00
10GO:0004331: fructose-2,6-bisphosphate 2-phosphatase activity0.00E+00
11GO:0042834: peptidoglycan binding0.00E+00
12GO:0003723: RNA binding1.16E-10
13GO:0004519: endonuclease activity3.74E-09
14GO:0004222: metalloendopeptidase activity2.19E-05
15GO:0008173: RNA methyltransferase activity1.11E-04
16GO:0016773: phosphotransferase activity, alcohol group as acceptor4.24E-04
17GO:0019843: rRNA binding4.82E-04
18GO:0008237: metallopeptidase activity5.50E-04
19GO:0004124: cysteine synthase activity7.77E-04
20GO:0016422: mRNA (2'-O-methyladenosine-N6-)-methyltransferase activity7.81E-04
21GO:0004156: dihydropteroate synthase activity7.81E-04
22GO:0003848: 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase activity7.81E-04
23GO:0052906: tRNA (guanine(37)-N(1))-methyltransferase activity7.81E-04
24GO:0033946: xyloglucan-specific endo-beta-1,4-glucanase activity7.81E-04
25GO:0004830: tryptophan-tRNA ligase activity7.81E-04
26GO:0052381: tRNA dimethylallyltransferase activity7.81E-04
27GO:0010347: L-galactose-1-phosphate phosphatase activity7.81E-04
28GO:0004016: adenylate cyclase activity7.81E-04
29GO:0005227: calcium activated cation channel activity7.81E-04
30GO:1905201: gibberellin transmembrane transporter activity7.81E-04
31GO:0008836: diaminopimelate decarboxylase activity7.81E-04
32GO:0004632: phosphopantothenate--cysteine ligase activity7.81E-04
33GO:0008676: 3-deoxy-8-phosphooctulonate synthase activity7.81E-04
34GO:0016274: protein-arginine N-methyltransferase activity7.81E-04
35GO:0004176: ATP-dependent peptidase activity9.67E-04
36GO:0008805: carbon-monoxide oxygenase activity1.69E-03
37GO:0008934: inositol monophosphate 1-phosphatase activity1.69E-03
38GO:0052833: inositol monophosphate 4-phosphatase activity1.69E-03
39GO:0000179: rRNA (adenine-N6,N6-)-dimethyltransferase activity1.69E-03
40GO:0005078: MAP-kinase scaffold activity1.69E-03
41GO:0003988: acetyl-CoA C-acyltransferase activity1.69E-03
42GO:0009884: cytokinin receptor activity1.69E-03
43GO:0017118: lipoyltransferase activity1.69E-03
44GO:0004814: arginine-tRNA ligase activity1.69E-03
45GO:0016415: octanoyltransferase activity1.69E-03
46GO:0004047: aminomethyltransferase activity1.69E-03
47GO:0052832: inositol monophosphate 3-phosphatase activity1.69E-03
48GO:0000774: adenyl-nucleotide exchange factor activity1.69E-03
49GO:0009672: auxin:proton symporter activity2.14E-03
50GO:0042781: 3'-tRNA processing endoribonuclease activity2.80E-03
51GO:0016805: dipeptidase activity2.80E-03
52GO:0005034: osmosensor activity2.80E-03
53GO:0046524: sucrose-phosphate synthase activity2.80E-03
54GO:0017150: tRNA dihydrouridine synthase activity2.80E-03
55GO:0005215: transporter activity3.25E-03
56GO:0010329: auxin efflux transmembrane transporter activity3.79E-03
57GO:0009982: pseudouridine synthase activity3.79E-03
58GO:0003725: double-stranded RNA binding3.79E-03
59GO:0003883: CTP synthase activity4.07E-03
60GO:0009041: uridylate kinase activity4.07E-03
61GO:0008508: bile acid:sodium symporter activity4.07E-03
62GO:0001872: (1->3)-beta-D-glucan binding4.07E-03
63GO:0009678: hydrogen-translocating pyrophosphatase activity4.07E-03
64GO:0042973: glucan endo-1,3-beta-D-glucosidase activity4.29E-03
65GO:0005253: anion channel activity5.50E-03
66GO:0046556: alpha-L-arabinofuranosidase activity5.50E-03
67GO:0004930: G-protein coupled receptor activity5.50E-03
68GO:0004659: prenyltransferase activity5.50E-03
69GO:0016279: protein-lysine N-methyltransferase activity5.50E-03
70GO:0001053: plastid sigma factor activity5.50E-03
71GO:0010011: auxin binding5.50E-03
72GO:0016987: sigma factor activity5.50E-03
73GO:0005275: amine transmembrane transporter activity7.08E-03
74GO:0070696: transmembrane receptor protein serine/threonine kinase binding7.08E-03
75GO:0004888: transmembrane signaling receptor activity7.08E-03
76GO:0030570: pectate lyase activity8.71E-03
77GO:0004784: superoxide dismutase activity8.81E-03
78GO:0005247: voltage-gated chloride channel activity8.81E-03
79GO:2001070: starch binding8.81E-03
80GO:0004605: phosphatidate cytidylyltransferase activity8.81E-03
81GO:1990714: hydroxyproline O-galactosyltransferase activity8.81E-03
82GO:0004656: procollagen-proline 4-dioxygenase activity1.07E-02
83GO:0019900: kinase binding1.07E-02
84GO:0008195: phosphatidate phosphatase activity1.07E-02
85GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity1.07E-02
86GO:0004427: inorganic diphosphatase activity1.27E-02
87GO:0019901: protein kinase binding1.39E-02
88GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds1.49E-02
89GO:0016762: xyloglucan:xyloglucosyl transferase activity1.49E-02
90GO:0003918: DNA topoisomerase type II (ATP-hydrolyzing) activity1.70E-02
91GO:0003777: microtubule motor activity1.71E-02
92GO:0016887: ATPase activity1.72E-02
93GO:0008889: glycerophosphodiester phosphodiesterase activity1.93E-02
94GO:0051082: unfolded protein binding2.34E-02
95GO:0004673: protein histidine kinase activity2.43E-02
96GO:0016798: hydrolase activity, acting on glycosyl bonds2.55E-02
97GO:0008559: xenobiotic-transporting ATPase activity2.70E-02
98GO:0044183: protein binding involved in protein folding2.70E-02
99GO:0008515: sucrose transmembrane transporter activity2.70E-02
100GO:0003691: double-stranded telomeric DNA binding2.70E-02
101GO:0015238: drug transmembrane transporter activity2.97E-02
102GO:0004022: alcohol dehydrogenase (NAD) activity3.25E-02
103GO:0031072: heat shock protein binding3.25E-02
104GO:0000155: phosphorelay sensor kinase activity3.25E-02
105GO:0005262: calcium channel activity3.25E-02
106GO:0019888: protein phosphatase regulator activity3.25E-02
107GO:0046872: metal ion binding3.48E-02
108GO:0016706: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors3.59E-02
109GO:0000977: RNA polymerase II regulatory region sequence-specific DNA binding3.65E-02
110GO:0003993: acid phosphatase activity3.75E-02
111GO:0051119: sugar transmembrane transporter activity3.85E-02
112GO:0004190: aspartic-type endopeptidase activity3.85E-02
113GO:0031418: L-ascorbic acid binding4.47E-02
114GO:0001135: transcription factor activity, RNA polymerase II transcription factor recruiting4.55E-02
115GO:0051087: chaperone binding4.80E-02
116GO:0043424: protein histidine kinase binding4.80E-02
117GO:0005345: purine nucleobase transmembrane transporter activity4.80E-02
118GO:0004871: signal transducer activity4.86E-02
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Gene type



Gene DE type