Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT4G36390

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0042407: cristae formation0.00E+00
2GO:0051958: methotrexate transport0.00E+00
3GO:0006003: fructose 2,6-bisphosphate metabolic process0.00E+00
4GO:0031129: inductive cell-cell signaling0.00E+00
5GO:0010157: response to chlorate0.00E+00
6GO:0006399: tRNA metabolic process0.00E+00
7GO:0015843: methylammonium transport0.00E+00
8GO:0043488: regulation of mRNA stability0.00E+00
9GO:0046460: neutral lipid biosynthetic process0.00E+00
10GO:0019379: sulfate assimilation, phosphoadenylyl sulfate reduction by phosphoadenylyl-sulfate reductase (thioredoxin)0.00E+00
11GO:0018131: oxazole or thiazole biosynthetic process0.00E+00
12GO:0090071: negative regulation of ribosome biogenesis0.00E+00
13GO:0031116: positive regulation of microtubule polymerization0.00E+00
14GO:0009658: chloroplast organization4.48E-08
15GO:0009734: auxin-activated signaling pathway2.52E-05
16GO:0006164: purine nucleotide biosynthetic process5.66E-05
17GO:0045037: protein import into chloroplast stroma8.99E-05
18GO:0010020: chloroplast fission1.31E-04
19GO:0090351: seedling development1.56E-04
20GO:0009733: response to auxin1.99E-04
21GO:0042793: transcription from plastid promoter2.21E-04
22GO:0009099: valine biosynthetic process2.97E-04
23GO:0009082: branched-chain amino acid biosynthetic process2.97E-04
24GO:0071028: nuclear mRNA surveillance4.10E-04
25GO:0043266: regulation of potassium ion transport4.10E-04
26GO:0010480: microsporocyte differentiation4.10E-04
27GO:0006659: phosphatidylserine biosynthetic process4.10E-04
28GO:2000021: regulation of ion homeostasis4.10E-04
29GO:0043609: regulation of carbon utilization4.10E-04
30GO:1902458: positive regulation of stomatal opening4.10E-04
31GO:0050801: ion homeostasis4.10E-04
32GO:0006177: GMP biosynthetic process4.10E-04
33GO:0006419: alanyl-tRNA aminoacylation4.10E-04
34GO:0010482: regulation of epidermal cell division4.10E-04
35GO:0009704: de-etiolation4.80E-04
36GO:0046620: regulation of organ growth4.80E-04
37GO:0040008: regulation of growth5.82E-04
38GO:0009097: isoleucine biosynthetic process5.86E-04
39GO:0006002: fructose 6-phosphate metabolic process5.86E-04
40GO:0071482: cellular response to light stimulus5.86E-04
41GO:0010206: photosystem II repair7.02E-04
42GO:2000039: regulation of trichome morphogenesis8.88E-04
43GO:0007154: cell communication8.88E-04
44GO:0080064: 4,4-dimethyl-9beta,19-cyclopropylsterol oxidation8.88E-04
45GO:0006423: cysteinyl-tRNA aminoacylation8.88E-04
46GO:0042325: regulation of phosphorylation8.88E-04
47GO:0042814: monopolar cell growth8.88E-04
48GO:0009220: pyrimidine ribonucleotide biosynthetic process8.88E-04
49GO:0042550: photosystem I stabilization8.88E-04
50GO:0031125: rRNA 3'-end processing8.88E-04
51GO:1903426: regulation of reactive oxygen species biosynthetic process8.88E-04
52GO:0071051: polyadenylation-dependent snoRNA 3'-end processing8.88E-04
53GO:0080005: photosystem stoichiometry adjustment8.88E-04
54GO:0034475: U4 snRNA 3'-end processing8.88E-04
55GO:0060359: response to ammonium ion8.88E-04
56GO:0045036: protein targeting to chloroplast9.63E-04
57GO:0006352: DNA-templated transcription, initiation1.11E-03
58GO:0010411: xyloglucan metabolic process1.37E-03
59GO:0045604: regulation of epidermal cell differentiation1.44E-03
60GO:0001578: microtubule bundle formation1.44E-03
61GO:0045493: xylan catabolic process1.44E-03
62GO:0006760: folic acid-containing compound metabolic process1.44E-03
63GO:0043157: response to cation stress1.44E-03
64GO:0030261: chromosome condensation1.44E-03
65GO:0010447: response to acidic pH1.44E-03
66GO:0016075: rRNA catabolic process1.44E-03
67GO:0034427: nuclear-transcribed mRNA catabolic process, exonucleolytic, 3'-5'1.44E-03
68GO:0051127: positive regulation of actin nucleation1.44E-03
69GO:0019419: sulfate reduction1.44E-03
70GO:0006000: fructose metabolic process1.44E-03
71GO:0048530: fruit morphogenesis2.08E-03
72GO:0043572: plastid fission2.08E-03
73GO:0016556: mRNA modification2.08E-03
74GO:2001141: regulation of RNA biosynthetic process2.08E-03
75GO:0051639: actin filament network formation2.08E-03
76GO:0009226: nucleotide-sugar biosynthetic process2.08E-03
77GO:0015696: ammonium transport2.08E-03
78GO:0005992: trehalose biosynthetic process2.25E-03
79GO:0006021: inositol biosynthetic process2.80E-03
80GO:0007020: microtubule nucleation2.80E-03
81GO:0071483: cellular response to blue light2.80E-03
82GO:0044205: 'de novo' UMP biosynthetic process2.80E-03
83GO:0051764: actin crosslink formation2.80E-03
84GO:0051322: anaphase2.80E-03
85GO:0010107: potassium ion import2.80E-03
86GO:0015846: polyamine transport2.80E-03
87GO:0072488: ammonium transmembrane transport2.80E-03
88GO:0046656: folic acid biosynthetic process2.80E-03
89GO:0010091: trichome branching3.54E-03
90GO:0098719: sodium ion import across plasma membrane3.59E-03
91GO:0009904: chloroplast accumulation movement3.59E-03
92GO:0045038: protein import into chloroplast thylakoid membrane3.59E-03
93GO:0016123: xanthophyll biosynthetic process3.59E-03
94GO:0010158: abaxial cell fate specification3.59E-03
95GO:0046785: microtubule polymerization3.59E-03
96GO:0009789: positive regulation of abscisic acid-activated signaling pathway3.84E-03
97GO:0032973: amino acid export4.44E-03
98GO:0009635: response to herbicide4.44E-03
99GO:0009228: thiamine biosynthetic process4.44E-03
100GO:0010264: myo-inositol hexakisphosphate biosynthetic process4.44E-03
101GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway4.44E-03
102GO:0009959: negative gravitropism4.44E-03
103GO:0006655: phosphatidylglycerol biosynthetic process4.44E-03
104GO:0016554: cytidine to uridine editing4.44E-03
105GO:0017148: negative regulation of translation5.35E-03
106GO:0034389: lipid particle organization5.35E-03
107GO:0046654: tetrahydrofolate biosynthetic process5.35E-03
108GO:0009903: chloroplast avoidance movement5.35E-03
109GO:0030488: tRNA methylation5.35E-03
110GO:0048444: floral organ morphogenesis5.35E-03
111GO:0080086: stamen filament development5.35E-03
112GO:2000067: regulation of root morphogenesis5.35E-03
113GO:0042372: phylloquinone biosynthetic process5.35E-03
114GO:0030163: protein catabolic process6.30E-03
115GO:0010196: nonphotochemical quenching6.32E-03
116GO:0006400: tRNA modification6.32E-03
117GO:0006207: 'de novo' pyrimidine nucleobase biosynthetic process6.32E-03
118GO:0048528: post-embryonic root development6.32E-03
119GO:0043090: amino acid import6.32E-03
120GO:0010050: vegetative phase change6.32E-03
121GO:0048437: floral organ development6.32E-03
122GO:0009828: plant-type cell wall loosening6.70E-03
123GO:0071805: potassium ion transmembrane transport7.12E-03
124GO:0009850: auxin metabolic process7.35E-03
125GO:0019375: galactolipid biosynthetic process7.35E-03
126GO:0042255: ribosome assembly7.35E-03
127GO:0006353: DNA-templated transcription, termination7.35E-03
128GO:0070413: trehalose metabolism in response to stress7.35E-03
129GO:2000070: regulation of response to water deprivation7.35E-03
130GO:0055075: potassium ion homeostasis7.35E-03
131GO:0048564: photosystem I assembly7.35E-03
132GO:0007275: multicellular organism development7.39E-03
133GO:0009657: plastid organization8.43E-03
134GO:0006526: arginine biosynthetic process8.43E-03
135GO:0009932: cell tip growth8.43E-03
136GO:0009409: response to cold8.58E-03
137GO:0009627: systemic acquired resistance8.95E-03
138GO:0019432: triglyceride biosynthetic process9.58E-03
139GO:0000373: Group II intron splicing9.58E-03
140GO:0006189: 'de novo' IMP biosynthetic process9.58E-03
141GO:0080144: amino acid homeostasis9.58E-03
142GO:0090333: regulation of stomatal closure9.58E-03
143GO:1900865: chloroplast RNA modification1.08E-02
144GO:0009862: systemic acquired resistance, salicylic acid mediated signaling pathway1.08E-02
145GO:0009793: embryo development ending in seed dormancy1.08E-02
146GO:0051453: regulation of intracellular pH1.08E-02
147GO:0042761: very long-chain fatty acid biosynthetic process1.08E-02
148GO:0043067: regulation of programmed cell death1.08E-02
149GO:0009098: leucine biosynthetic process1.08E-02
150GO:0000103: sulfate assimilation1.20E-02
151GO:0006949: syncytium formation1.20E-02
152GO:0071555: cell wall organization1.29E-02
153GO:1903507: negative regulation of nucleic acid-templated transcription1.33E-02
154GO:0006415: translational termination1.33E-02
155GO:0048229: gametophyte development1.33E-02
156GO:0009637: response to blue light1.33E-02
157GO:0010015: root morphogenesis1.33E-02
158GO:0007623: circadian rhythm1.34E-02
159GO:0016024: CDP-diacylglycerol biosynthetic process1.47E-02
160GO:0010582: floral meristem determinacy1.47E-02
161GO:0006839: mitochondrial transport1.52E-02
162GO:0030036: actin cytoskeleton organization1.61E-02
163GO:0050826: response to freezing1.61E-02
164GO:0010075: regulation of meristem growth1.61E-02
165GO:0009926: auxin polar transport1.72E-02
166GO:0009934: regulation of meristem structural organization1.75E-02
167GO:0010207: photosystem II assembly1.75E-02
168GO:0042546: cell wall biogenesis1.79E-02
169GO:0010039: response to iron ion1.90E-02
170GO:0010030: positive regulation of seed germination1.90E-02
171GO:0009965: leaf morphogenesis1.93E-02
172GO:0006071: glycerol metabolic process2.05E-02
173GO:0010025: wax biosynthetic process2.05E-02
174GO:0051017: actin filament bundle assembly2.21E-02
175GO:0019344: cysteine biosynthetic process2.21E-02
176GO:0009116: nucleoside metabolic process2.21E-02
177GO:0006813: potassium ion transport2.32E-02
178GO:0043622: cortical microtubule organization2.37E-02
179GO:0008299: isoprenoid biosynthetic process2.37E-02
180GO:0016998: cell wall macromolecule catabolic process2.53E-02
181GO:0031408: oxylipin biosynthetic process2.53E-02
182GO:0006730: one-carbon metabolic process2.70E-02
183GO:0031348: negative regulation of defense response2.70E-02
184GO:0080092: regulation of pollen tube growth2.70E-02
185GO:2000022: regulation of jasmonic acid mediated signaling pathway2.70E-02
186GO:0009831: plant-type cell wall modification involved in multidimensional cell growth2.87E-02
187GO:0010082: regulation of root meristem growth2.87E-02
188GO:0009306: protein secretion3.05E-02
189GO:0016117: carotenoid biosynthetic process3.23E-02
190GO:0046777: protein autophosphorylation3.32E-02
191GO:0008033: tRNA processing3.41E-02
192GO:0048653: anther development3.41E-02
193GO:0042631: cellular response to water deprivation3.41E-02
194GO:0000226: microtubule cytoskeleton organization3.41E-02
195GO:0010197: polar nucleus fusion3.60E-02
196GO:0008360: regulation of cell shape3.60E-02
197GO:0006885: regulation of pH3.60E-02
198GO:0015979: photosynthesis3.60E-02
199GO:0006814: sodium ion transport3.79E-02
200GO:0006468: protein phosphorylation3.90E-02
201GO:0008654: phospholipid biosynthetic process3.99E-02
202GO:0055072: iron ion homeostasis3.99E-02
203GO:0009791: post-embryonic development3.99E-02
204GO:0032502: developmental process4.38E-02
205GO:0009630: gravitropism4.38E-02
206GO:0010583: response to cyclopentenone4.38E-02
207GO:0016032: viral process4.38E-02
208GO:0016042: lipid catabolic process4.77E-02
RankGO TermAdjusted P value
1GO:0004643: phosphoribosylaminoimidazolecarboxamide formyltransferase activity0.00E+00
2GO:0080176: xyloglucan 1,6-alpha-xylosidase activity0.00E+00
3GO:0004639: phosphoribosylaminoimidazolesuccinocarboxamide synthase activity0.00E+00
4GO:0008756: o-succinylbenzoate-CoA ligase activity0.00E+00
5GO:0015350: methotrexate transporter activity0.00E+00
6GO:0004056: argininosuccinate lyase activity0.00E+00
7GO:0004358: glutamate N-acetyltransferase activity0.00E+00
8GO:0003937: IMP cyclohydrolase activity0.00E+00
9GO:0015231: 5-formyltetrahydrofolate transporter activity0.00E+00
10GO:0061634: alpha-D-xyloside xylohydrolase0.00E+00
11GO:0004331: fructose-2,6-bisphosphate 2-phosphatase activity0.00E+00
12GO:0004588: orotate phosphoribosyltransferase activity0.00E+00
13GO:0004590: orotidine-5'-phosphate decarboxylase activity0.00E+00
14GO:0019808: polyamine binding0.00E+00
15GO:0003873: 6-phosphofructo-2-kinase activity0.00E+00
16GO:0001053: plastid sigma factor activity9.96E-05
17GO:0016987: sigma factor activity9.96E-05
18GO:0003984: acetolactate synthase activity4.10E-04
19GO:0004813: alanine-tRNA ligase activity4.10E-04
20GO:0033946: xyloglucan-specific endo-beta-1,4-glucanase activity4.10E-04
21GO:0046481: digalactosyldiacylglycerol synthase activity4.10E-04
22GO:0050139: nicotinate-N-glucosyltransferase activity4.10E-04
23GO:0046480: galactolipid galactosyltransferase activity4.10E-04
24GO:0005227: calcium activated cation channel activity4.10E-04
25GO:0050567: glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity4.10E-04
26GO:0046429: 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase activity4.10E-04
27GO:0043022: ribosome binding4.80E-04
28GO:0001077: transcriptional activator activity, RNA polymerase II core promoter proximal region sequence-specific binding8.88E-04
29GO:0004512: inositol-3-phosphate synthase activity8.88E-04
30GO:0008517: folic acid transporter activity8.88E-04
31GO:0010291: carotene beta-ring hydroxylase activity8.88E-04
32GO:0004326: tetrahydrofolylpolyglutamate synthase activity8.88E-04
33GO:0009977: proton motive force dependent protein transmembrane transporter activity8.88E-04
34GO:0033741: adenylyl-sulfate reductase (glutathione) activity8.88E-04
35GO:0003938: IMP dehydrogenase activity8.88E-04
36GO:0102083: 7,8-dihydromonapterin aldolase activity8.88E-04
37GO:0009973: adenylyl-sulfate reductase activity8.88E-04
38GO:0004817: cysteine-tRNA ligase activity8.88E-04
39GO:0000095: S-adenosyl-L-methionine transmembrane transporter activity8.88E-04
40GO:0004604: phosphoadenylyl-sulfate reductase (thioredoxin) activity8.88E-04
41GO:0004150: dihydroneopterin aldolase activity8.88E-04
42GO:0004805: trehalose-phosphatase activity9.63E-04
43GO:0003913: DNA photolyase activity1.44E-03
44GO:0004557: alpha-galactosidase activity1.44E-03
45GO:0052692: raffinose alpha-galactosidase activity1.44E-03
46GO:0046524: sucrose-phosphate synthase activity1.44E-03
47GO:0070330: aromatase activity1.44E-03
48GO:0052656: L-isoleucine transaminase activity2.08E-03
49GO:0016851: magnesium chelatase activity2.08E-03
50GO:0043023: ribosomal large subunit binding2.08E-03
51GO:0052654: L-leucine transaminase activity2.08E-03
52GO:0052655: L-valine transaminase activity2.08E-03
53GO:0000254: C-4 methylsterol oxidase activity2.08E-03
54GO:0035250: UDP-galactosyltransferase activity2.08E-03
55GO:0015079: potassium ion transmembrane transporter activity2.48E-03
56GO:0004084: branched-chain-amino-acid transaminase activity2.80E-03
57GO:0003841: 1-acylglycerol-3-phosphate O-acyltransferase activity2.80E-03
58GO:0046556: alpha-L-arabinofuranosidase activity2.80E-03
59GO:0004737: pyruvate decarboxylase activity2.80E-03
60GO:0009044: xylan 1,4-beta-xylosidase activity2.80E-03
61GO:0043621: protein self-association3.22E-03
62GO:0018685: alkane 1-monooxygenase activity3.59E-03
63GO:0016773: phosphotransferase activity, alcohol group as acceptor3.59E-03
64GO:0004040: amidase activity3.59E-03
65GO:0042578: phosphoric ester hydrolase activity4.44E-03
66GO:0015081: sodium ion transmembrane transporter activity4.44E-03
67GO:0008519: ammonium transmembrane transporter activity4.44E-03
68GO:0030976: thiamine pyrophosphate binding4.44E-03
69GO:2001070: starch binding4.44E-03
70GO:0016208: AMP binding4.44E-03
71GO:0016832: aldehyde-lyase activity5.35E-03
72GO:0003730: mRNA 3'-UTR binding5.35E-03
73GO:0004144: diacylglycerol O-acyltransferase activity5.35E-03
74GO:0004723: calcium-dependent protein serine/threonine phosphatase activity5.35E-03
75GO:0016762: xyloglucan:xyloglucosyl transferase activity5.53E-03
76GO:0003872: 6-phosphofructokinase activity6.32E-03
77GO:0009881: photoreceptor activity6.32E-03
78GO:0052689: carboxylic ester hydrolase activity9.32E-03
79GO:0016798: hydrolase activity, acting on glycosyl bonds9.44E-03
80GO:0004721: phosphoprotein phosphatase activity9.44E-03
81GO:0003747: translation release factor activity9.58E-03
82GO:0008236: serine-type peptidase activity9.95E-03
83GO:0004252: serine-type endopeptidase activity1.02E-02
84GO:0042803: protein homodimerization activity1.13E-02
85GO:0016614: oxidoreductase activity, acting on CH-OH group of donors1.21E-02
86GO:0004675: transmembrane receptor protein serine/threonine kinase activity1.23E-02
87GO:0015386: potassium:proton antiporter activity1.33E-02
88GO:0008559: xenobiotic-transporting ATPase activity1.33E-02
89GO:0005089: Rho guanyl-nucleotide exchange factor activity1.33E-02
90GO:0000049: tRNA binding1.47E-02
91GO:0000976: transcription regulatory region sequence-specific DNA binding1.47E-02
92GO:0004022: alcohol dehydrogenase (NAD) activity1.61E-02
93GO:0019888: protein phosphatase regulator activity1.61E-02
94GO:0000175: 3'-5'-exoribonuclease activity1.61E-02
95GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds1.74E-02
96GO:0042973: glucan endo-1,3-beta-D-glucosidase activity1.75E-02
97GO:0003723: RNA binding1.98E-02
98GO:0102337: 3-oxo-cerotoyl-CoA synthase activity2.05E-02
99GO:0102338: 3-oxo-lignoceronyl-CoA synthase activity2.05E-02
100GO:0102336: 3-oxo-arachidoyl-CoA synthase activity2.05E-02
101GO:0003714: transcription corepressor activity2.21E-02
102GO:0051536: iron-sulfur cluster binding2.21E-02
103GO:0005528: FK506 binding2.21E-02
104GO:0003899: DNA-directed 5'-3' RNA polymerase activity2.32E-02
105GO:0016788: hydrolase activity, acting on ester bonds2.39E-02
106GO:0033612: receptor serine/threonine kinase binding2.53E-02
107GO:0019706: protein-cysteine S-palmitoyltransferase activity2.53E-02
108GO:0008408: 3'-5' exonuclease activity2.53E-02
109GO:0005525: GTP binding2.53E-02
110GO:0050660: flavin adenine dinucleotide binding2.81E-02
111GO:0003727: single-stranded RNA binding3.05E-02
112GO:0008536: Ran GTPase binding3.60E-02
113GO:0005524: ATP binding3.78E-02
114GO:0010181: FMN binding3.79E-02
115GO:0015385: sodium:proton antiporter activity4.59E-02
116GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor4.59E-02
117GO:0051015: actin filament binding4.59E-02
118GO:0016791: phosphatase activity4.79E-02
119GO:0003924: GTPase activity4.93E-02
120GO:0008565: protein transporter activity4.93E-02
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Gene type



Gene DE type