co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT4G35920

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0000488: maturation of LSU-rRNA from tetracistronic rRNA transcript (SSU-rRNA, LSU-rRNA, 4.5S-rRNA, 5S-rRNA)	0.00E+00
2	GO:0097164: ammonium ion metabolic process	0.00E+00
3	GO:0045184: establishment of protein localization	0.00E+00
4	GO:0015843: methylammonium transport	0.00E+00
5	GO:0031222: arabinan catabolic process	0.00E+00
6	GO:0070979: protein K11-linked ubiquitination	0.00E+00
7	GO:1905421: regulation of plant organ morphogenesis	0.00E+00
8	GO:0043488: regulation of mRNA stability	0.00E+00
9	GO:0061157: mRNA destabilization	0.00E+00
10	GO:0000455: enzyme-directed rRNA pseudouridine synthesis	0.00E+00
11	GO:0030155: regulation of cell adhesion	0.00E+00
12	GO:0009606: tropism	0.00E+00
13	GO:0018131: oxazole or thiazole biosynthetic process	0.00E+00
14	GO:0031116: positive regulation of microtubule polymerization	0.00E+00
15	GO:0010068: protoderm histogenesis	0.00E+00
16	GO:0009157: deoxyribonucleoside monophosphate biosynthetic process	0.00E+00
17	GO:1903224: regulation of endodermal cell differentiation	0.00E+00
18	GO:0000489: maturation of SSU-rRNA from tetracistronic rRNA transcript (SSU-rRNA, LSU-rRNA, 4.5S-rRNA, 5S-rRNA)	0.00E+00
19	GO:1905177: tracheary element differentiation	0.00E+00
20	GO:0046620: regulation of organ growth	3.72E-10
21	GO:0009734: auxin-activated signaling pathway	4.63E-09
22	GO:0009926: auxin polar transport	6.48E-07
23	GO:0040008: regulation of growth	6.59E-07
24	GO:0009733: response to auxin	1.06E-06
25	GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway	8.94E-05
26	GO:0007389: pattern specification process	1.25E-04
27	GO:0000373: Group II intron splicing	1.65E-04
28	GO:0009658: chloroplast organization	1.92E-04
29	GO:0032502: developmental process	4.66E-04
30	GO:0010252: auxin homeostasis	5.70E-04
31	GO:0006264: mitochondrial DNA replication	8.26E-04
32	GO:0035987: endodermal cell differentiation	8.26E-04
33	GO:0033259: plastid DNA replication	8.26E-04
34	GO:0006436: tryptophanyl-tRNA aminoacylation	8.26E-04
35	GO:0034080: CENP-A containing nucleosome assembly	8.26E-04
36	GO:0000066: mitochondrial ornithine transport	8.26E-04
37	GO:0006747: FAD biosynthetic process	8.26E-04
38	GO:0051418: microtubule nucleation by microtubule organizing center	8.26E-04
39	GO:0042659: regulation of cell fate specification	8.26E-04
40	GO:0070509: calcium ion import	8.26E-04
41	GO:0090558: plant epidermis development	8.26E-04
42	GO:0010480: microsporocyte differentiation	8.26E-04
43	GO:0005992: trehalose biosynthetic process	8.40E-04
44	GO:0048528: post-embryonic root development	1.07E-03
45	GO:0071555: cell wall organization	1.22E-03
46	GO:0042255: ribosome assembly	1.34E-03
47	GO:0009657: plastid organization	1.63E-03
48	GO:0009786: regulation of asymmetric cell division	1.79E-03
49	GO:0006529: asparagine biosynthetic process	1.79E-03
50	GO:2000123: positive regulation of stomatal complex development	1.79E-03
51	GO:0033566: gamma-tubulin complex localization	1.79E-03
52	GO:0070981: L-asparagine biosynthetic process	1.79E-03
53	GO:0010569: regulation of double-strand break repair via homologous recombination	1.79E-03
54	GO:0071497: cellular response to freezing	1.79E-03
55	GO:1900033: negative regulation of trichome patterning	1.79E-03
56	GO:0031425: chloroplast RNA processing	2.33E-03
57	GO:0009638: phototropism	2.33E-03
58	GO:0006949: syncytium formation	2.73E-03
59	GO:0001578: microtubule bundle formation	2.96E-03
60	GO:0016050: vesicle organization	2.96E-03
61	GO:0071398: cellular response to fatty acid	2.96E-03
62	GO:0007052: mitotic spindle organization	2.96E-03
63	GO:0045910: negative regulation of DNA recombination	2.96E-03
64	GO:0048281: inflorescence morphogenesis	2.96E-03
65	GO:0051127: positive regulation of actin nucleation	2.96E-03
66	GO:0090708: specification of plant organ axis polarity	2.96E-03
67	GO:0006954: inflammatory response	2.96E-03
68	GO:0031145: anaphase-promoting complex-dependent catabolic process	2.96E-03
69	GO:0010623: programmed cell death involved in cell development	2.96E-03
70	GO:0051604: protein maturation	2.96E-03
71	GO:0006468: protein phosphorylation	3.06E-03
72	GO:0009089: lysine biosynthetic process via diaminopimelate	3.16E-03
73	GO:0009767: photosynthetic electron transport chain	4.13E-03
74	GO:2000012: regulation of auxin polar transport	4.13E-03
75	GO:0043572: plastid fission	4.32E-03
76	GO:0031048: chromatin silencing by small RNA	4.32E-03
77	GO:0010148: transpiration	4.32E-03
78	GO:0051415: interphase microtubule nucleation by interphase microtubule organizing center	4.32E-03
79	GO:0034508: centromere complex assembly	4.32E-03
80	GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly	4.32E-03
81	GO:0009067: aspartate family amino acid biosynthetic process	4.32E-03
82	GO:1902476: chloride transmembrane transport	4.32E-03
83	GO:0051513: regulation of monopolar cell growth	4.32E-03
84	GO:0030071: regulation of mitotic metaphase/anaphase transition	4.32E-03
85	GO:0051639: actin filament network formation	4.32E-03
86	GO:0048645: animal organ formation	4.32E-03
87	GO:0044211: CTP salvage	4.32E-03
88	GO:0015696: ammonium transport	4.32E-03
89	GO:0046739: transport of virus in multicellular host	4.32E-03
90	GO:0019048: modulation by virus of host morphology or physiology	4.32E-03
91	GO:0032981: mitochondrial respiratory chain complex I assembly	4.32E-03
92	GO:2000904: regulation of starch metabolic process	4.32E-03
93	GO:0090307: mitotic spindle assembly	4.32E-03
94	GO:0010020: chloroplast fission	4.67E-03
95	GO:0090351: seedling development	5.24E-03
96	GO:0010411: xyloglucan metabolic process	5.31E-03
97	GO:0051567: histone H3-K9 methylation	5.84E-03
98	GO:0010508: positive regulation of autophagy	5.84E-03
99	GO:0007020: microtubule nucleation	5.84E-03
100	GO:0044206: UMP salvage	5.84E-03
101	GO:0009165: nucleotide biosynthetic process	5.84E-03
102	GO:1901141: regulation of lignin biosynthetic process	5.84E-03
103	GO:0048629: trichome patterning	5.84E-03
104	GO:0051764: actin crosslink formation	5.84E-03
105	GO:0030104: water homeostasis	5.84E-03
106	GO:0051322: anaphase	5.84E-03
107	GO:2000038: regulation of stomatal complex development	5.84E-03
108	GO:0072488: ammonium transmembrane transport	5.84E-03
109	GO:0022622: root system development	5.84E-03
110	GO:0044205: 'de novo' UMP biosynthetic process	5.84E-03
111	GO:0000160: phosphorelay signal transduction system	6.45E-03
112	GO:0009944: polarity specification of adaxial/abaxial axis	6.51E-03
113	GO:0009742: brassinosteroid mediated signaling pathway	7.18E-03
114	GO:0051302: regulation of cell division	7.20E-03
115	GO:0006544: glycine metabolic process	7.52E-03
116	GO:1902183: regulation of shoot apical meristem development	7.52E-03
117	GO:0016123: xanthophyll biosynthetic process	7.52E-03
118	GO:0010438: cellular response to sulfur starvation	7.52E-03
119	GO:0010158: abaxial cell fate specification	7.52E-03
120	GO:0032876: negative regulation of DNA endoreduplication	7.52E-03
121	GO:0046785: microtubule polymerization	7.52E-03
122	GO:0010375: stomatal complex patterning	7.52E-03
123	GO:0016310: phosphorylation	7.62E-03
124	GO:0016998: cell wall macromolecule catabolic process	7.92E-03
125	GO:0006306: DNA methylation	7.92E-03
126	GO:0007275: multicellular organism development	8.74E-03
127	GO:0006206: pyrimidine nucleobase metabolic process	9.36E-03
128	GO:0018258: protein O-linked glycosylation via hydroxyproline	9.36E-03
129	GO:0006563: L-serine metabolic process	9.36E-03
130	GO:0009228: thiamine biosynthetic process	9.36E-03
131	GO:0010405: arabinogalactan protein metabolic process	9.36E-03
132	GO:0009959: negative gravitropism	9.36E-03
133	GO:0006655: phosphatidylglycerol biosynthetic process	9.36E-03
134	GO:0006139: nucleobase-containing compound metabolic process	9.36E-03
135	GO:0010315: auxin efflux	9.36E-03
136	GO:0016458: gene silencing	9.36E-03
137	GO:0010082: regulation of root meristem growth	9.49E-03
138	GO:0009686: gibberellin biosynthetic process	9.49E-03
139	GO:0006839: mitochondrial transport	9.72E-03
140	GO:0030488: tRNA methylation	1.13E-02
141	GO:0009088: threonine biosynthetic process	1.13E-02
142	GO:0080086: stamen filament development	1.13E-02
143	GO:2000067: regulation of root morphogenesis	1.13E-02
144	GO:0042372: phylloquinone biosynthetic process	1.13E-02
145	GO:0009942: longitudinal axis specification	1.13E-02
146	GO:0042546: cell wall biogenesis	1.20E-02
147	GO:0006342: chromatin silencing	1.31E-02
148	GO:0009958: positive gravitropism	1.31E-02
149	GO:0030307: positive regulation of cell growth	1.34E-02
150	GO:0010103: stomatal complex morphogenesis	1.34E-02
151	GO:0032880: regulation of protein localization	1.34E-02
152	GO:0010161: red light signaling pathway	1.34E-02
153	GO:0009610: response to symbiotic fungus	1.34E-02
154	GO:0006955: immune response	1.34E-02
155	GO:0006821: chloride transport	1.34E-02
156	GO:0070370: cellular heat acclimation	1.34E-02
157	GO:0010050: vegetative phase change	1.34E-02
158	GO:0048437: floral organ development	1.34E-02
159	GO:0010444: guard mother cell differentiation	1.34E-02
160	GO:0006855: drug transmembrane transport	1.39E-02
161	GO:0009664: plant-type cell wall organization	1.52E-02
162	GO:0006353: DNA-templated transcription, termination	1.57E-02
163	GO:0048766: root hair initiation	1.57E-02
164	GO:0070413: trehalose metabolism in response to stress	1.57E-02
165	GO:0055075: potassium ion homeostasis	1.57E-02
166	GO:0009231: riboflavin biosynthetic process	1.57E-02
167	GO:0006402: mRNA catabolic process	1.57E-02
168	GO:0010439: regulation of glucosinolate biosynthetic process	1.57E-02
169	GO:0001522: pseudouridine synthesis	1.57E-02
170	GO:0009850: auxin metabolic process	1.57E-02
171	GO:0009787: regulation of abscisic acid-activated signaling pathway	1.57E-02
172	GO:0009704: de-etiolation	1.57E-02
173	GO:0032875: regulation of DNA endoreduplication	1.57E-02
174	GO:0009736: cytokinin-activated signaling pathway	1.67E-02
175	GO:0010583: response to cyclopentenone	1.74E-02
176	GO:0010497: plasmodesmata-mediated intercellular transport	1.81E-02
177	GO:0010099: regulation of photomorphogenesis	1.81E-02
178	GO:0001558: regulation of cell growth	1.81E-02
179	GO:0006002: fructose 6-phosphate metabolic process	1.81E-02
180	GO:0009827: plant-type cell wall modification	1.81E-02
181	GO:0010100: negative regulation of photomorphogenesis	1.81E-02
182	GO:0006526: arginine biosynthetic process	1.81E-02
183	GO:0032544: plastid translation	1.81E-02
184	GO:0007166: cell surface receptor signaling pathway	1.85E-02
185	GO:0009828: plant-type cell wall loosening	1.97E-02
186	GO:0000902: cell morphogenesis	2.05E-02
187	GO:0009051: pentose-phosphate shunt, oxidative branch	2.05E-02
188	GO:2000024: regulation of leaf development	2.05E-02
189	GO:0006783: heme biosynthetic process	2.05E-02
190	GO:0051607: defense response to virus	2.23E-02
191	GO:2000280: regulation of root development	2.31E-02
192	GO:0035999: tetrahydrofolate interconversion	2.31E-02
193	GO:0009862: systemic acquired resistance, salicylic acid mediated signaling pathway	2.31E-02
194	GO:0009740: gibberellic acid mediated signaling pathway	2.42E-02
195	GO:0030422: production of siRNA involved in RNA interference	2.59E-02
196	GO:0048829: root cap development	2.59E-02
197	GO:0009641: shade avoidance	2.59E-02
198	GO:0006298: mismatch repair	2.59E-02
199	GO:0006259: DNA metabolic process	2.59E-02
200	GO:0009299: mRNA transcription	2.59E-02
201	GO:0006535: cysteine biosynthetic process from serine	2.59E-02
202	GO:0048364: root development	2.72E-02
203	GO:0009826: unidimensional cell growth	2.74E-02
204	GO:0048229: gametophyte development	2.87E-02
205	GO:0006415: translational termination	2.87E-02
206	GO:0010015: root morphogenesis	2.87E-02
207	GO:0006265: DNA topological change	2.87E-02
208	GO:0009773: photosynthetic electron transport in photosystem I	2.87E-02
209	GO:0009682: induced systemic resistance	2.87E-02
210	GO:0045037: protein import into chloroplast stroma	3.16E-02
211	GO:0010582: floral meristem determinacy	3.16E-02
212	GO:0016024: CDP-diacylglycerol biosynthetic process	3.16E-02
213	GO:0009785: blue light signaling pathway	3.46E-02
214	GO:0030036: actin cytoskeleton organization	3.46E-02
215	GO:0050826: response to freezing	3.46E-02
216	GO:0010075: regulation of meristem growth	3.46E-02
217	GO:0009725: response to hormone	3.46E-02
218	GO:0010628: positive regulation of gene expression	3.46E-02
219	GO:0006006: glucose metabolic process	3.46E-02
220	GO:0009058: biosynthetic process	3.69E-02
221	GO:0009934: regulation of meristem structural organization	3.77E-02
222	GO:0010207: photosystem II assembly	3.77E-02
223	GO:0006541: glutamine metabolic process	3.77E-02
224	GO:0080167: response to karrikin	3.97E-02
225	GO:0055085: transmembrane transport	4.06E-02
226	GO:0010030: positive regulation of seed germination	4.09E-02
227	GO:0070588: calcium ion transmembrane transport	4.09E-02
228	GO:0009833: plant-type primary cell wall biogenesis	4.42E-02
229	GO:0006071: glycerol metabolic process	4.42E-02
230	GO:0006833: water transport	4.42E-02
231	GO:0006897: endocytosis	4.63E-02
232	GO:0030150: protein import into mitochondrial matrix	4.76E-02
233	GO:0010187: negative regulation of seed germination	4.76E-02
234	GO:0019344: cysteine biosynthetic process	4.76E-02
235	GO:0051017: actin filament bundle assembly	4.76E-02

Rank	GO Term	Adjusted P value
1	GO:0008756: o-succinylbenzoate-CoA ligase activity	0.00E+00
2	GO:0004056: argininosuccinate lyase activity	0.00E+00
3	GO:0019136: deoxynucleoside kinase activity	0.00E+00
4	GO:0047661: amino-acid racemase activity	0.00E+00
5	GO:0009672: auxin:proton symporter activity	2.12E-04
6	GO:0004805: trehalose-phosphatase activity	2.66E-04
7	GO:0019199: transmembrane receptor protein kinase activity	3.10E-04
8	GO:0010329: auxin efflux transmembrane transporter activity	4.68E-04
9	GO:0016829: lyase activity	6.73E-04
10	GO:0030785: [ribulose-bisphosphate carboxylase]-lysine N-methyltransferase activity	8.26E-04
11	GO:0004830: tryptophan-tRNA ligase activity	8.26E-04
12	GO:0033946: xyloglucan-specific endo-beta-1,4-glucanase activity	8.26E-04
13	GO:0010285: L,L-diaminopimelate aminotransferase activity	8.26E-04
14	GO:0010313: phytochrome binding	8.26E-04
15	GO:0050139: nicotinate-N-glucosyltransferase activity	8.26E-04
16	GO:0051777: ent-kaurenoate oxidase activity	8.26E-04
17	GO:0004088: carbamoyl-phosphate synthase (glutamine-hydrolyzing) activity	8.26E-04
18	GO:0042834: peptidoglycan binding	8.26E-04
19	GO:0052906: tRNA (guanine(37)-N(1))-methyltransferase activity	8.26E-04
20	GO:0005290: L-histidine transmembrane transporter activity	8.26E-04
21	GO:0004008: copper-exporting ATPase activity	8.26E-04
22	GO:0004071: aspartate-ammonia ligase activity	8.26E-04
23	GO:0030570: pectate lyase activity	1.35E-03
24	GO:0003727: single-stranded RNA binding	1.50E-03
25	GO:0004563: beta-N-acetylhexosaminidase activity	1.79E-03
26	GO:0050017: L-3-cyanoalanine synthase activity	1.79E-03
27	GO:0004066: asparagine synthase (glutamine-hydrolyzing) activity	1.79E-03
28	GO:0043425: bHLH transcription factor binding	1.79E-03
29	GO:0000095: S-adenosyl-L-methionine transmembrane transporter activity	1.79E-03
30	GO:0003919: FMN adenylyltransferase activity	1.79E-03
31	GO:0000064: L-ornithine transmembrane transporter activity	1.79E-03
32	GO:0015929: hexosaminidase activity	1.79E-03
33	GO:0016762: xyloglucan:xyloglucosyl transferase activity	2.67E-03
34	GO:0043621: protein self-association	2.72E-03
35	GO:0004557: alpha-galactosidase activity	2.96E-03
36	GO:0052692: raffinose alpha-galactosidase activity	2.96E-03
37	GO:0070180: large ribosomal subunit rRNA binding	2.96E-03
38	GO:0070330: aromatase activity	2.96E-03
39	GO:0017150: tRNA dihydrouridine synthase activity	2.96E-03
40	GO:0005089: Rho guanyl-nucleotide exchange factor activity	3.16E-03
41	GO:0000156: phosphorelay response regulator activity	3.16E-03
42	GO:0004675: transmembrane receptor protein serine/threonine kinase activity	3.66E-03
43	GO:0004674: protein serine/threonine kinase activity	4.08E-03
44	GO:0005215: transporter activity	4.11E-03
45	GO:0009982: pseudouridine synthase activity	4.13E-03
46	GO:0016301: kinase activity	4.30E-03
47	GO:0035197: siRNA binding	4.32E-03
48	GO:0001872: (1->3)-beta-D-glucan binding	4.32E-03
49	GO:0015189: L-lysine transmembrane transporter activity	4.32E-03
50	GO:0004072: aspartate kinase activity	4.32E-03
51	GO:0017172: cysteine dioxygenase activity	4.32E-03
52	GO:0015181: arginine transmembrane transporter activity	4.32E-03
53	GO:0016798: hydrolase activity, acting on glycosyl bonds	5.31E-03
54	GO:0046556: alpha-L-arabinofuranosidase activity	5.84E-03
55	GO:0004845: uracil phosphoribosyltransferase activity	5.84E-03
56	GO:0004345: glucose-6-phosphate dehydrogenase activity	5.84E-03
57	GO:0008409: 5'-3' exonuclease activity	5.84E-03
58	GO:0043015: gamma-tubulin binding	5.84E-03
59	GO:0005253: anion channel activity	5.84E-03
60	GO:0042277: peptide binding	5.84E-03
61	GO:0015238: drug transmembrane transporter activity	6.45E-03
62	GO:0031418: L-ascorbic acid binding	6.51E-03
63	GO:0008725: DNA-3-methyladenine glycosylase activity	7.52E-03
64	GO:0004372: glycine hydroxymethyltransferase activity	7.52E-03
65	GO:0018685: alkane 1-monooxygenase activity	7.52E-03
66	GO:0016773: phosphotransferase activity, alcohol group as acceptor	7.52E-03
67	GO:0008519: ammonium transmembrane transporter activity	9.36E-03
68	GO:0005247: voltage-gated chloride channel activity	9.36E-03
69	GO:0030983: mismatched DNA binding	9.36E-03
70	GO:0004605: phosphatidate cytidylyltransferase activity	9.36E-03
71	GO:1990714: hydroxyproline O-galactosyltransferase activity	9.36E-03
72	GO:0016208: AMP binding	9.36E-03
73	GO:0005524: ATP binding	1.05E-02
74	GO:0004124: cysteine synthase activity	1.13E-02
75	GO:0008195: phosphatidate phosphatase activity	1.13E-02
76	GO:0004849: uridine kinase activity	1.13E-02
77	GO:0045156: electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity	1.13E-02
78	GO:0003730: mRNA 3'-UTR binding	1.13E-02
79	GO:0004656: procollagen-proline 4-dioxygenase activity	1.13E-02
80	GO:0019899: enzyme binding	1.34E-02
81	GO:0003872: 6-phosphofructokinase activity	1.34E-02
82	GO:0005375: copper ion transmembrane transporter activity	1.81E-02
83	GO:0008173: RNA methyltransferase activity	1.81E-02
84	GO:0003918: DNA topoisomerase type II (ATP-hydrolyzing) activity	1.81E-02
85	GO:0051015: actin filament binding	1.85E-02
86	GO:0016759: cellulose synthase activity	1.97E-02
87	GO:0004672: protein kinase activity	2.00E-02
88	GO:0009815: 1-aminocyclopropane-1-carboxylate oxidase activity	2.05E-02
89	GO:0003747: translation release factor activity	2.05E-02
90	GO:0008889: glycerophosphodiester phosphodiesterase activity	2.05E-02
91	GO:0016597: amino acid binding	2.23E-02
92	GO:0004650: polygalacturonase activity	2.33E-02
93	GO:0004713: protein tyrosine kinase activity	2.59E-02
94	GO:0008327: methyl-CpG binding	2.87E-02
95	GO:0004521: endoribonuclease activity	3.16E-02
96	GO:0015266: protein channel activity	3.46E-02
97	GO:0015662: ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism	3.46E-02
98	GO:0004089: carbonate dehydratase activity	3.46E-02
99	GO:0031072: heat shock protein binding	3.46E-02
100	GO:0005262: calcium channel activity	3.46E-02
101	GO:0004022: alcohol dehydrogenase (NAD) activity	3.46E-02
102	GO:0008083: growth factor activity	3.77E-02
103	GO:0042973: glucan endo-1,3-beta-D-glucosidase activity	3.77E-02
104	GO:0004252: serine-type endopeptidase activity	3.93E-02
105	GO:0030170: pyridoxal phosphate binding	3.93E-02
106	GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds	4.35E-02
107	GO:0003887: DNA-directed DNA polymerase activity	4.42E-02
108	GO:0042393: histone binding	4.45E-02
109	GO:0015297: antiporter activity	4.85E-02