Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT4G34790

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0031222: arabinan catabolic process0.00E+00
2GO:0042794: rRNA transcription from plastid promoter0.00E+00
3GO:1901698: response to nitrogen compound0.00E+00
4GO:0090627: plant epidermal cell differentiation0.00E+00
5GO:0009606: tropism0.00E+00
6GO:0090322: regulation of superoxide metabolic process0.00E+00
7GO:0000372: Group I intron splicing0.00E+00
8GO:1903224: regulation of endodermal cell differentiation0.00E+00
9GO:0002949: tRNA threonylcarbamoyladenosine modification0.00E+00
10GO:0097164: ammonium ion metabolic process0.00E+00
11GO:0045184: establishment of protein localization0.00E+00
12GO:0009734: auxin-activated signaling pathway6.31E-06
13GO:0009416: response to light stimulus1.64E-05
14GO:0046620: regulation of organ growth2.14E-05
15GO:2000038: regulation of stomatal complex development1.15E-04
16GO:0009733: response to auxin3.03E-04
17GO:0010067: procambium histogenesis3.40E-04
18GO:0035987: endodermal cell differentiation4.48E-04
19GO:0006436: tryptophanyl-tRNA aminoacylation4.48E-04
20GO:0034757: negative regulation of iron ion transport4.48E-04
21GO:0048016: inositol phosphate-mediated signaling4.48E-04
22GO:0034970: histone H3-R2 methylation4.48E-04
23GO:0042659: regulation of cell fate specification4.48E-04
24GO:0034972: histone H3-R26 methylation4.48E-04
25GO:0090558: plant epidermis development4.48E-04
26GO:1903866: palisade mesophyll development4.48E-04
27GO:0034971: histone H3-R17 methylation4.48E-04
28GO:0033206: meiotic cytokinesis4.48E-04
29GO:0042255: ribosome assembly5.46E-04
30GO:0009926: auxin polar transport5.84E-04
31GO:0010305: leaf vascular tissue pattern formation6.33E-04
32GO:0007389: pattern specification process6.66E-04
33GO:0000373: Group II intron splicing7.98E-04
34GO:0018022: peptidyl-lysine methylation9.67E-04
35GO:0006529: asparagine biosynthetic process9.67E-04
36GO:0019919: peptidyl-arginine methylation, to asymmetrical-dimethyl arginine9.67E-04
37GO:2000123: positive regulation of stomatal complex development9.67E-04
38GO:1902884: positive regulation of response to oxidative stress9.67E-04
39GO:0010569: regulation of double-strand break repair via homologous recombination9.67E-04
40GO:0070981: L-asparagine biosynthetic process9.67E-04
41GO:0010271: regulation of chlorophyll catabolic process9.67E-04
42GO:0071497: cellular response to freezing9.67E-04
43GO:1900033: negative regulation of trichome patterning9.67E-04
44GO:0080009: mRNA methylation9.67E-04
45GO:0009786: regulation of asymmetric cell division9.67E-04
46GO:0010252: auxin homeostasis1.05E-03
47GO:0048829: root cap development1.09E-03
48GO:0090708: specification of plant organ axis polarity1.57E-03
49GO:0080117: secondary growth1.57E-03
50GO:0090391: granum assembly1.57E-03
51GO:0010589: leaf proximal/distal pattern formation1.57E-03
52GO:0071705: nitrogen compound transport1.57E-03
53GO:0010588: cotyledon vascular tissue pattern formation1.64E-03
54GO:1902476: chloride transmembrane transport2.28E-03
55GO:0051513: regulation of monopolar cell growth2.28E-03
56GO:0044211: CTP salvage2.28E-03
57GO:0009800: cinnamic acid biosynthetic process2.28E-03
58GO:0046739: transport of virus in multicellular host2.28E-03
59GO:2000904: regulation of starch metabolic process2.28E-03
60GO:1902290: positive regulation of defense response to oomycetes2.28E-03
61GO:0009790: embryo development2.81E-03
62GO:1901141: regulation of lignin biosynthetic process3.06E-03
63GO:0006479: protein methylation3.06E-03
64GO:0048629: trichome patterning3.06E-03
65GO:1900864: mitochondrial RNA modification3.06E-03
66GO:0071249: cellular response to nitrate3.06E-03
67GO:0035279: mRNA cleavage involved in gene silencing by miRNA3.06E-03
68GO:0030104: water homeostasis3.06E-03
69GO:0044206: UMP salvage3.06E-03
70GO:0009831: plant-type cell wall modification involved in multidimensional cell growth3.71E-03
71GO:1902183: regulation of shoot apical meristem development3.93E-03
72GO:0016123: xanthophyll biosynthetic process3.93E-03
73GO:0010438: cellular response to sulfur starvation3.93E-03
74GO:0032957: inositol trisphosphate metabolic process3.93E-03
75GO:0032876: negative regulation of DNA endoreduplication3.93E-03
76GO:0030308: negative regulation of cell growth3.93E-03
77GO:0010375: stomatal complex patterning3.93E-03
78GO:0080110: sporopollenin biosynthetic process3.93E-03
79GO:0009616: virus induced gene silencing3.93E-03
80GO:0006544: glycine metabolic process3.93E-03
81GO:0009739: response to gibberellin4.31E-03
82GO:0010051: xylem and phloem pattern formation4.73E-03
83GO:0010405: arabinogalactan protein metabolic process4.86E-03
84GO:0009913: epidermal cell differentiation4.86E-03
85GO:0006655: phosphatidylglycerol biosynthetic process4.86E-03
86GO:0016554: cytidine to uridine editing4.86E-03
87GO:0042176: regulation of protein catabolic process4.86E-03
88GO:0042793: transcription from plastid promoter4.86E-03
89GO:0048831: regulation of shoot system development4.86E-03
90GO:0010315: auxin efflux4.86E-03
91GO:0006559: L-phenylalanine catabolic process4.86E-03
92GO:0006206: pyrimidine nucleobase metabolic process4.86E-03
93GO:0018258: protein O-linked glycosylation via hydroxyproline4.86E-03
94GO:0046855: inositol phosphate dephosphorylation4.86E-03
95GO:0009643: photosynthetic acclimation4.86E-03
96GO:0006563: L-serine metabolic process4.86E-03
97GO:0048364: root development5.38E-03
98GO:0009909: regulation of flower development5.75E-03
99GO:2000037: regulation of stomatal complex patterning5.87E-03
100GO:0000079: regulation of cyclin-dependent protein serine/threonine kinase activity5.87E-03
101GO:0010310: regulation of hydrogen peroxide metabolic process5.87E-03
102GO:2000067: regulation of root morphogenesis5.87E-03
103GO:0071470: cellular response to osmotic stress5.87E-03
104GO:0048509: regulation of meristem development5.87E-03
105GO:2000033: regulation of seed dormancy process5.87E-03
106GO:0030488: tRNA methylation5.87E-03
107GO:0032502: developmental process6.75E-03
108GO:0035196: production of miRNAs involved in gene silencing by miRNA6.93E-03
109GO:0010103: stomatal complex morphogenesis6.93E-03
110GO:0009864: induced systemic resistance, jasmonic acid mediated signaling pathway6.93E-03
111GO:0006821: chloride transport6.93E-03
112GO:0009658: chloroplast organization7.07E-03
113GO:0009740: gibberellic acid mediated signaling pathway7.34E-03
114GO:0009828: plant-type cell wall loosening7.66E-03
115GO:0055075: potassium ion homeostasis8.07E-03
116GO:0009938: negative regulation of gibberellic acid mediated signaling pathway8.07E-03
117GO:0010439: regulation of glucosinolate biosynthetic process8.07E-03
118GO:0006353: DNA-templated transcription, termination8.07E-03
119GO:0048766: root hair initiation8.07E-03
120GO:0009723: response to ethylene8.82E-03
121GO:0010093: specification of floral organ identity9.27E-03
122GO:0009880: embryonic pattern specification9.27E-03
123GO:0007186: G-protein coupled receptor signaling pathway9.27E-03
124GO:0001510: RNA methylation9.27E-03
125GO:0010497: plasmodesmata-mediated intercellular transport9.27E-03
126GO:0010029: regulation of seed germination9.69E-03
127GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway1.03E-02
128GO:0009051: pentose-phosphate shunt, oxidative branch1.05E-02
129GO:0009245: lipid A biosynthetic process1.05E-02
130GO:2000024: regulation of leaf development1.05E-02
131GO:0048507: meristem development1.05E-02
132GO:0009058: biosynthetic process1.13E-02
133GO:1900426: positive regulation of defense response to bacterium1.18E-02
134GO:0009638: phototropism1.18E-02
135GO:0035999: tetrahydrofolate interconversion1.18E-02
136GO:0042761: very long-chain fatty acid biosynthetic process1.18E-02
137GO:2000280: regulation of root development1.18E-02
138GO:0006349: regulation of gene expression by genetic imprinting1.18E-02
139GO:1900865: chloroplast RNA modification1.18E-02
140GO:0031425: chloroplast RNA processing1.18E-02
141GO:0048481: plant ovule development1.20E-02
142GO:0000160: phosphorelay signal transduction system1.26E-02
143GO:0006351: transcription, DNA-templated1.26E-02
144GO:0006949: syncytium formation1.32E-02
145GO:0010048: vernalization response1.32E-02
146GO:0045892: negative regulation of transcription, DNA-templated1.32E-02
147GO:0006535: cysteine biosynthetic process from serine1.32E-02
148GO:0030422: production of siRNA involved in RNA interference1.32E-02
149GO:0046856: phosphatidylinositol dephosphorylation1.46E-02
150GO:0010015: root morphogenesis1.46E-02
151GO:0009682: induced systemic resistance1.46E-02
152GO:0040008: regulation of growth1.50E-02
153GO:0008361: regulation of cell size1.61E-02
154GO:0015706: nitrate transport1.61E-02
155GO:0016024: CDP-diacylglycerol biosynthetic process1.61E-02
156GO:0030001: metal ion transport1.74E-02
157GO:0009767: photosynthetic electron transport chain1.77E-02
158GO:0010102: lateral root morphogenesis1.77E-02
159GO:0009785: blue light signaling pathway1.77E-02
160GO:0006006: glucose metabolic process1.77E-02
161GO:0009691: cytokinin biosynthetic process1.77E-02
162GO:0006541: glutamine metabolic process1.92E-02
163GO:0010207: photosystem II assembly1.92E-02
164GO:0010020: chloroplast fission1.92E-02
165GO:0006270: DNA replication initiation1.92E-02
166GO:0010223: secondary shoot formation1.92E-02
167GO:0030154: cell differentiation1.97E-02
168GO:0009640: photomorphogenesis1.97E-02
169GO:0010114: response to red light1.97E-02
170GO:0009617: response to bacterium1.99E-02
171GO:0080188: RNA-directed DNA methylation2.09E-02
172GO:0010167: response to nitrate2.09E-02
173GO:0006071: glycerol metabolic process2.26E-02
174GO:0006833: water transport2.26E-02
175GO:0019344: cysteine biosynthetic process2.43E-02
176GO:0009944: polarity specification of adaxial/abaxial axis2.43E-02
177GO:0080147: root hair cell development2.43E-02
178GO:0009863: salicylic acid mediated signaling pathway2.43E-02
179GO:0010187: negative regulation of seed germination2.43E-02
180GO:2000377: regulation of reactive oxygen species metabolic process2.43E-02
181GO:0009664: plant-type cell wall organization2.47E-02
182GO:0042538: hyperosmotic salinity response2.47E-02
183GO:0006825: copper ion transport2.61E-02
184GO:0051302: regulation of cell division2.61E-02
185GO:0006418: tRNA aminoacylation for protein translation2.61E-02
186GO:0006874: cellular calcium ion homeostasis2.61E-02
187GO:0009826: unidimensional cell growth2.64E-02
188GO:0009736: cytokinin-activated signaling pathway2.65E-02
189GO:0006357: regulation of transcription from RNA polymerase II promoter2.68E-02
190GO:0006468: protein phosphorylation2.78E-02
191GO:0003333: amino acid transmembrane transport2.79E-02
192GO:0031348: negative regulation of defense response2.97E-02
193GO:0009625: response to insect3.16E-02
194GO:0071215: cellular response to abscisic acid stimulus3.16E-02
195GO:0010082: regulation of root meristem growth3.16E-02
196GO:0009686: gibberellin biosynthetic process3.16E-02
197GO:0001944: vasculature development3.16E-02
198GO:0048316: seed development3.24E-02
199GO:0010089: xylem development3.36E-02
200GO:0010584: pollen exine formation3.36E-02
201GO:0006284: base-excision repair3.36E-02
202GO:0070417: cellular response to cold3.56E-02
203GO:0080167: response to karrikin3.61E-02
204GO:0010087: phloem or xylem histogenesis3.76E-02
205GO:0042631: cellular response to water deprivation3.76E-02
206GO:0008033: tRNA processing3.76E-02
207GO:0046323: glucose import3.96E-02
208GO:0009741: response to brassinosteroid3.96E-02
209GO:0009958: positive gravitropism3.96E-02
210GO:0009960: endosperm development3.96E-02
211GO:0009742: brassinosteroid mediated signaling pathway4.00E-02
212GO:0007018: microtubule-based movement4.17E-02
213GO:0009646: response to absence of light4.17E-02
214GO:0048544: recognition of pollen4.17E-02
215GO:0048825: cotyledon development4.38E-02
216GO:0008654: phospholipid biosynthetic process4.38E-02
217GO:0006355: regulation of transcription, DNA-templated4.46E-02
218GO:0080156: mitochondrial mRNA modification4.60E-02
219GO:0048510: regulation of timing of transition from vegetative to reproductive phase4.60E-02
220GO:0071554: cell wall organization or biogenesis4.60E-02
221GO:0009630: gravitropism4.82E-02
222GO:0010583: response to cyclopentenone4.82E-02
223GO:0019761: glucosinolate biosynthetic process4.82E-02
RankGO TermAdjusted P value
1GO:0061711: N(6)-L-threonylcarbamoyladenine synthase0.00E+00
2GO:0004016: adenylate cyclase activity4.48E-04
3GO:0046030: inositol trisphosphate phosphatase activity4.48E-04
4GO:0016422: mRNA (2'-O-methyladenosine-N6-)-methyltransferase activity4.48E-04
5GO:0016274: protein-arginine N-methyltransferase activity4.48E-04
6GO:0004071: aspartate-ammonia ligase activity4.48E-04
7GO:0052906: tRNA (guanine(37)-N(1))-methyltransferase activity4.48E-04
8GO:0052381: tRNA dimethylallyltransferase activity4.48E-04
9GO:0004830: tryptophan-tRNA ligase activity4.48E-04
10GO:0003727: single-stranded RNA binding4.68E-04
11GO:0009672: auxin:proton symporter activity9.39E-04
12GO:0000095: S-adenosyl-L-methionine transmembrane transporter activity9.67E-04
13GO:0008805: carbon-monoxide oxygenase activity9.67E-04
14GO:0015929: hexosaminidase activity9.67E-04
15GO:0004563: beta-N-acetylhexosaminidase activity9.67E-04
16GO:0000179: rRNA (adenine-N6,N6-)-dimethyltransferase activity9.67E-04
17GO:0009884: cytokinin receptor activity9.67E-04
18GO:0035241: protein-arginine omega-N monomethyltransferase activity9.67E-04
19GO:0016277: [myelin basic protein]-arginine N-methyltransferase activity9.67E-04
20GO:0004066: asparagine synthase (glutamine-hydrolyzing) activity9.67E-04
21GO:0035242: protein-arginine omega-N asymmetric methyltransferase activity9.67E-04
22GO:0004871: signal transducer activity9.85E-04
23GO:0016707: gibberellin 3-beta-dioxygenase activity1.57E-03
24GO:0008469: histone-arginine N-methyltransferase activity1.57E-03
25GO:0004180: carboxypeptidase activity1.57E-03
26GO:0017150: tRNA dihydrouridine synthase activity1.57E-03
27GO:0045548: phenylalanine ammonia-lyase activity1.57E-03
28GO:0047334: diphosphate-fructose-6-phosphate 1-phosphotransferase activity1.57E-03
29GO:0016805: dipeptidase activity1.57E-03
30GO:0005034: osmosensor activity1.57E-03
31GO:0003725: double-stranded RNA binding1.64E-03
32GO:0010329: auxin efflux transmembrane transporter activity1.64E-03
33GO:0001872: (1->3)-beta-D-glucan binding2.28E-03
34GO:0005354: galactose transmembrane transporter activity2.28E-03
35GO:0016279: protein-lysine N-methyltransferase activity3.06E-03
36GO:0004845: uracil phosphoribosyltransferase activity3.06E-03
37GO:0004345: glucose-6-phosphate dehydrogenase activity3.06E-03
38GO:0019199: transmembrane receptor protein kinase activity3.06E-03
39GO:0005253: anion channel activity3.06E-03
40GO:0004930: G-protein coupled receptor activity3.06E-03
41GO:0046556: alpha-L-arabinofuranosidase activity3.06E-03
42GO:0003723: RNA binding3.17E-03
43GO:0008725: DNA-3-methyladenine glycosylase activity3.93E-03
44GO:0004372: glycine hydroxymethyltransferase activity3.93E-03
45GO:0005247: voltage-gated chloride channel activity4.86E-03
46GO:0003688: DNA replication origin binding4.86E-03
47GO:0004605: phosphatidate cytidylyltransferase activity4.86E-03
48GO:1990714: hydroxyproline O-galactosyltransferase activity4.86E-03
49GO:0031177: phosphopantetheine binding4.86E-03
50GO:0034485: phosphatidylinositol-3,4,5-trisphosphate 5-phosphatase activity4.86E-03
51GO:0001085: RNA polymerase II transcription factor binding5.11E-03
52GO:0003690: double-stranded DNA binding5.27E-03
53GO:0003777: microtubule motor activity5.75E-03
54GO:0019900: kinase binding5.87E-03
55GO:0004124: cysteine synthase activity5.87E-03
56GO:0045156: electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity5.87E-03
57GO:0004849: uridine kinase activity5.87E-03
58GO:0016832: aldehyde-lyase activity5.87E-03
59GO:0000035: acyl binding5.87E-03
60GO:0019901: protein kinase binding5.89E-03
61GO:0003700: transcription factor activity, sequence-specific DNA binding6.61E-03
62GO:0008168: methyltransferase activity6.67E-03
63GO:0004650: polygalacturonase activity7.06E-03
64GO:0004674: protein serine/threonine kinase activity8.05E-03
65GO:0000036: ACP phosphopantetheine attachment site binding involved in fatty acid biosynthetic process8.07E-03
66GO:0008173: RNA methyltransferase activity9.27E-03
67GO:0008889: glycerophosphodiester phosphodiesterase activity1.05E-02
68GO:0000989: transcription factor activity, transcription factor binding1.05E-02
69GO:0000977: RNA polymerase II regulatory region sequence-specific DNA binding1.25E-02
70GO:0001135: transcription factor activity, RNA polymerase II transcription factor recruiting1.29E-02
71GO:0008171: O-methyltransferase activity1.32E-02
72GO:0004673: protein histidine kinase activity1.32E-02
73GO:0001228: transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding1.39E-02
74GO:0005089: Rho guanyl-nucleotide exchange factor activity1.46E-02
75GO:0000981: RNA polymerase II transcription factor activity, sequence-specific DNA binding1.52E-02
76GO:0003697: single-stranded DNA binding1.52E-02
77GO:0016706: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors1.52E-02
78GO:0004439: phosphatidylinositol-4,5-bisphosphate 5-phosphatase activity1.61E-02
79GO:0004712: protein serine/threonine/tyrosine kinase activity1.66E-02
80GO:0005515: protein binding1.74E-02
81GO:0031072: heat shock protein binding1.77E-02
82GO:0000155: phosphorelay sensor kinase activity1.77E-02
83GO:0004022: alcohol dehydrogenase (NAD) activity1.77E-02
84GO:0042973: glucan endo-1,3-beta-D-glucosidase activity1.92E-02
85GO:0004519: endonuclease activity2.00E-02
86GO:0005215: transporter activity2.03E-02
87GO:0004970: ionotropic glutamate receptor activity2.09E-02
88GO:0005217: intracellular ligand-gated ion channel activity2.09E-02
89GO:0008134: transcription factor binding2.43E-02
90GO:0043424: protein histidine kinase binding2.61E-02
91GO:0005345: purine nucleobase transmembrane transporter activity2.61E-02
92GO:0035251: UDP-glucosyltransferase activity2.79E-02
93GO:0016788: hydrolase activity, acting on ester bonds2.83E-02
94GO:0030570: pectate lyase activity3.16E-02
95GO:0003677: DNA binding3.52E-02
96GO:0016874: ligase activity3.56E-02
97GO:0004812: aminoacyl-tRNA ligase activity3.56E-02
98GO:0018024: histone-lysine N-methyltransferase activity3.56E-02
99GO:0052689: carboxylic ester hydrolase activity4.08E-02
100GO:0005355: glucose transmembrane transporter activity4.17E-02
101GO:0050662: coenzyme binding4.17E-02
102GO:0044212: transcription regulatory region DNA binding4.44E-02
103GO:0019843: rRNA binding4.71E-02
104GO:0042803: protein homodimerization activity4.76E-02
105GO:0004518: nuclease activity4.82E-02
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Gene type



Gene DE type