Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT4G34760

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0015843: methylammonium transport0.00E+00
2GO:0031222: arabinan catabolic process0.00E+00
3GO:0070979: protein K11-linked ubiquitination0.00E+00
4GO:0010059: positive regulation of atrichoblast fate specification0.00E+00
5GO:0018131: oxazole or thiazole biosynthetic process0.00E+00
6GO:0090627: plant epidermal cell differentiation0.00E+00
7GO:0009606: tropism0.00E+00
8GO:0090322: regulation of superoxide metabolic process0.00E+00
9GO:1901698: response to nitrogen compound0.00E+00
10GO:1903224: regulation of endodermal cell differentiation0.00E+00
11GO:0007638: mechanosensory behavior0.00E+00
12GO:0002103: endonucleolytic cleavage of tetracistronic rRNA transcript (SSU-rRNA, LSU-rRNA, 4.5S-rRNA, 5S-rRNA)0.00E+00
13GO:0002949: tRNA threonylcarbamoyladenosine modification0.00E+00
14GO:0097164: ammonium ion metabolic process0.00E+00
15GO:0045184: establishment of protein localization0.00E+00
16GO:0046620: regulation of organ growth4.12E-08
17GO:0009734: auxin-activated signaling pathway3.29E-07
18GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway2.81E-06
19GO:0009926: auxin polar transport9.21E-06
20GO:0042793: transcription from plastid promoter2.65E-05
21GO:0009451: RNA modification6.10E-05
22GO:0009733: response to auxin9.13E-05
23GO:0009657: plastid organization1.30E-04
24GO:0007389: pattern specification process1.30E-04
25GO:2000038: regulation of stomatal complex development3.19E-04
26GO:0032876: negative regulation of DNA endoreduplication4.75E-04
27GO:0010252: auxin homeostasis5.97E-04
28GO:0009913: epidermal cell differentiation6.58E-04
29GO:0009658: chloroplast organization7.99E-04
30GO:0000066: mitochondrial ornithine transport8.42E-04
31GO:0010342: endosperm cellularization8.42E-04
32GO:0034757: negative regulation of iron ion transport8.42E-04
33GO:0042659: regulation of cell fate specification8.42E-04
34GO:0070509: calcium ion import8.42E-04
35GO:0019294: keto-3-deoxy-D-manno-octulosonic acid biosynthetic process8.42E-04
36GO:0072684: mitochondrial tRNA 3'-trailer cleavage, endonucleolytic8.42E-04
37GO:0010063: positive regulation of trichoblast fate specification8.42E-04
38GO:0090558: plant epidermis development8.42E-04
39GO:0010480: microsporocyte differentiation8.42E-04
40GO:1903866: palisade mesophyll development8.42E-04
41GO:0035987: endodermal cell differentiation8.42E-04
42GO:0006436: tryptophanyl-tRNA aminoacylation8.42E-04
43GO:0006468: protein phosphorylation9.19E-04
44GO:0010411: xyloglucan metabolic process1.01E-03
45GO:0048437: floral organ development1.10E-03
46GO:0009416: response to light stimulus1.36E-03
47GO:2000123: positive regulation of stomatal complex development1.83E-03
48GO:0010254: nectary development1.83E-03
49GO:0070981: L-asparagine biosynthetic process1.83E-03
50GO:0010271: regulation of chlorophyll catabolic process1.83E-03
51GO:1902326: positive regulation of chlorophyll biosynthetic process1.83E-03
52GO:0010569: regulation of double-strand break repair via homologous recombination1.83E-03
53GO:0018026: peptidyl-lysine monomethylation1.83E-03
54GO:0071497: cellular response to freezing1.83E-03
55GO:0010434: bract formation1.83E-03
56GO:0009662: etioplast organization1.83E-03
57GO:1900033: negative regulation of trichome patterning1.83E-03
58GO:1904143: positive regulation of carotenoid biosynthetic process1.83E-03
59GO:0080009: mRNA methylation1.83E-03
60GO:0009786: regulation of asymmetric cell division1.83E-03
61GO:0048439: flower morphogenesis1.83E-03
62GO:0006529: asparagine biosynthetic process1.83E-03
63GO:0000373: Group II intron splicing2.02E-03
64GO:0000902: cell morphogenesis2.02E-03
65GO:0042546: cell wall biogenesis2.68E-03
66GO:0006535: cysteine biosynthetic process from serine2.81E-03
67GO:0009954: proximal/distal pattern formation3.03E-03
68GO:0034414: tRNA 3'-trailer cleavage, endonucleolytic3.03E-03
69GO:0045910: negative regulation of DNA recombination3.03E-03
70GO:0090708: specification of plant organ axis polarity3.03E-03
71GO:0080117: secondary growth3.03E-03
72GO:0090391: granum assembly3.03E-03
73GO:0031145: anaphase-promoting complex-dependent catabolic process3.03E-03
74GO:0042780: tRNA 3'-end processing3.03E-03
75GO:0001578: microtubule bundle formation3.03E-03
76GO:0071705: nitrogen compound transport3.03E-03
77GO:0045037: protein import into chloroplast stroma3.73E-03
78GO:0010582: floral meristem determinacy3.73E-03
79GO:0040008: regulation of growth4.02E-03
80GO:0009767: photosynthetic electron transport chain4.25E-03
81GO:1902476: chloride transmembrane transport4.41E-03
82GO:0010071: root meristem specification4.41E-03
83GO:0051513: regulation of monopolar cell growth4.41E-03
84GO:0007231: osmosensory signaling pathway4.41E-03
85GO:0030071: regulation of mitotic metaphase/anaphase transition4.41E-03
86GO:0051639: actin filament network formation4.41E-03
87GO:0010239: chloroplast mRNA processing4.41E-03
88GO:0010306: rhamnogalacturonan II biosynthetic process4.41E-03
89GO:0044211: CTP salvage4.41E-03
90GO:0019048: modulation by virus of host morphology or physiology4.41E-03
91GO:0015696: ammonium transport4.41E-03
92GO:0046739: transport of virus in multicellular host4.41E-03
93GO:2000904: regulation of starch metabolic process4.41E-03
94GO:0051289: protein homotetramerization4.41E-03
95GO:0043572: plastid fission4.41E-03
96GO:0031048: chromatin silencing by small RNA4.41E-03
97GO:0010027: thylakoid membrane organization4.47E-03
98GO:0070588: calcium ion transmembrane transport5.40E-03
99GO:0048629: trichome patterning5.97E-03
100GO:0051764: actin crosslink formation5.97E-03
101GO:0051322: anaphase5.97E-03
102GO:0071249: cellular response to nitrate5.97E-03
103GO:0030104: water homeostasis5.97E-03
104GO:0033500: carbohydrate homeostasis5.97E-03
105GO:0072488: ammonium transmembrane transport5.97E-03
106GO:0000914: phragmoplast assembly5.97E-03
107GO:0046656: folic acid biosynthetic process5.97E-03
108GO:0006021: inositol biosynthetic process5.97E-03
109GO:0006221: pyrimidine nucleotide biosynthetic process5.97E-03
110GO:0051567: histone H3-K9 methylation5.97E-03
111GO:0044206: UMP salvage5.97E-03
112GO:0006346: methylation-dependent chromatin silencing5.97E-03
113GO:1901141: regulation of lignin biosynthetic process5.97E-03
114GO:0006479: protein methylation5.97E-03
115GO:0048481: plant ovule development6.29E-03
116GO:0000160: phosphorelay signal transduction system6.70E-03
117GO:0019344: cysteine biosynthetic process6.70E-03
118GO:0009944: polarity specification of adaxial/abaxial axis6.70E-03
119GO:0006418: tRNA aminoacylation for protein translation7.41E-03
120GO:0009742: brassinosteroid mediated signaling pathway7.50E-03
121GO:0009107: lipoate biosynthetic process7.68E-03
122GO:1902183: regulation of shoot apical meristem development7.68E-03
123GO:0016123: xanthophyll biosynthetic process7.68E-03
124GO:0010158: abaxial cell fate specification7.68E-03
125GO:0030308: negative regulation of cell growth7.68E-03
126GO:0010375: stomatal complex patterning7.68E-03
127GO:0048497: maintenance of floral organ identity7.68E-03
128GO:0006544: glycine metabolic process7.68E-03
129GO:0006306: DNA methylation8.16E-03
130GO:0016998: cell wall macromolecule catabolic process8.16E-03
131GO:0006655: phosphatidylglycerol biosynthetic process9.56E-03
132GO:1902456: regulation of stomatal opening9.56E-03
133GO:0048831: regulation of shoot system development9.56E-03
134GO:0016554: cytidine to uridine editing9.56E-03
135GO:0010315: auxin efflux9.56E-03
136GO:0016458: gene silencing9.56E-03
137GO:0009643: photosynthetic acclimation9.56E-03
138GO:0006206: pyrimidine nucleobase metabolic process9.56E-03
139GO:0018258: protein O-linked glycosylation via hydroxyproline9.56E-03
140GO:0006563: L-serine metabolic process9.56E-03
141GO:0009228: thiamine biosynthetic process9.56E-03
142GO:0010405: arabinogalactan protein metabolic process9.56E-03
143GO:0009831: plant-type cell wall modification involved in multidimensional cell growth9.78E-03
144GO:0010082: regulation of root meristem growth9.78E-03
145GO:2000037: regulation of stomatal complex patterning1.16E-02
146GO:0010310: regulation of hydrogen peroxide metabolic process1.16E-02
147GO:2000067: regulation of root morphogenesis1.16E-02
148GO:0009955: adaxial/abaxial pattern specification1.16E-02
149GO:0071470: cellular response to osmotic stress1.16E-02
150GO:0010067: procambium histogenesis1.16E-02
151GO:0009942: longitudinal axis specification1.16E-02
152GO:0048509: regulation of meristem development1.16E-02
153GO:0046654: tetrahydrofolate biosynthetic process1.16E-02
154GO:0030488: tRNA methylation1.16E-02
155GO:1901259: chloroplast rRNA processing1.16E-02
156GO:0009790: embryo development1.23E-02
157GO:0010087: phloem or xylem histogenesis1.25E-02
158GO:0009741: response to brassinosteroid1.35E-02
159GO:0048868: pollen tube development1.35E-02
160GO:0009864: induced systemic resistance, jasmonic acid mediated signaling pathway1.37E-02
161GO:0009610: response to symbiotic fungus1.37E-02
162GO:0006955: immune response1.37E-02
163GO:0048528: post-embryonic root development1.37E-02
164GO:0006821: chloride transport1.37E-02
165GO:0010050: vegetative phase change1.37E-02
166GO:0010444: guard mother cell differentiation1.37E-02
167GO:0009396: folic acid-containing compound biosynthetic process1.37E-02
168GO:0010103: stomatal complex morphogenesis1.37E-02
169GO:0009646: response to absence of light1.46E-02
170GO:0048544: recognition of pollen1.46E-02
171GO:0048825: cotyledon development1.56E-02
172GO:0001522: pseudouridine synthesis1.60E-02
173GO:0009850: auxin metabolic process1.60E-02
174GO:0009787: regulation of abscisic acid-activated signaling pathway1.60E-02
175GO:0032875: regulation of DNA endoreduplication1.60E-02
176GO:0030162: regulation of proteolysis1.60E-02
177GO:0048766: root hair initiation1.60E-02
178GO:0055075: potassium ion homeostasis1.60E-02
179GO:0000105: histidine biosynthetic process1.60E-02
180GO:0009736: cytokinin-activated signaling pathway1.73E-02
181GO:0016310: phosphorylation1.76E-02
182GO:0032502: developmental process1.79E-02
183GO:0010583: response to cyclopentenone1.79E-02
184GO:0009827: plant-type cell wall modification1.85E-02
185GO:0010497: plasmodesmata-mediated intercellular transport1.85E-02
186GO:0071555: cell wall organization1.99E-02
187GO:0009828: plant-type cell wall loosening2.03E-02
188GO:0009051: pentose-phosphate shunt, oxidative branch2.10E-02
189GO:0009245: lipid A biosynthetic process2.10E-02
190GO:2000024: regulation of leaf development2.10E-02
191GO:0051607: defense response to virus2.30E-02
192GO:0000910: cytokinesis2.30E-02
193GO:0042761: very long-chain fatty acid biosynthetic process2.37E-02
194GO:0009638: phototropism2.37E-02
195GO:2000280: regulation of root development2.37E-02
196GO:0006349: regulation of gene expression by genetic imprinting2.37E-02
197GO:0035999: tetrahydrofolate interconversion2.37E-02
198GO:1900865: chloroplast RNA modification2.37E-02
199GO:0009862: systemic acquired resistance, salicylic acid mediated signaling pathway2.37E-02
200GO:0031425: chloroplast RNA processing2.37E-02
201GO:0009641: shade avoidance2.64E-02
202GO:0006298: mismatch repair2.64E-02
203GO:0006949: syncytium formation2.64E-02
204GO:0006259: DNA metabolic process2.64E-02
205GO:0010048: vernalization response2.64E-02
206GO:0030422: production of siRNA involved in RNA interference2.64E-02
207GO:0048829: root cap development2.64E-02
208GO:0045036: protein targeting to chloroplast2.64E-02
209GO:0048364: root development2.86E-02
210GO:0010015: root morphogenesis2.93E-02
211GO:0006265: DNA topological change2.93E-02
212GO:0009089: lysine biosynthetic process via diaminopimelate2.93E-02
213GO:0006816: calcium ion transport2.93E-02
214GO:0009773: photosynthetic electron transport in photosystem I2.93E-02
215GO:0048229: gametophyte development2.93E-02
216GO:0009793: embryo development ending in seed dormancy3.09E-02
217GO:0008361: regulation of cell size3.23E-02
218GO:0006790: sulfur compound metabolic process3.23E-02
219GO:0015706: nitrate transport3.23E-02
220GO:0016024: CDP-diacylglycerol biosynthetic process3.23E-02
221GO:0010075: regulation of meristem growth3.54E-02
222GO:0010628: positive regulation of gene expression3.54E-02
223GO:0006006: glucose metabolic process3.54E-02
224GO:0010102: lateral root morphogenesis3.54E-02
225GO:0009785: blue light signaling pathway3.54E-02
226GO:0009691: cytokinin biosynthetic process3.54E-02
227GO:0050826: response to freezing3.54E-02
228GO:0009058: biosynthetic process3.83E-02
229GO:0009934: regulation of meristem structural organization3.85E-02
230GO:0010207: photosystem II assembly3.85E-02
231GO:0006541: glutamine metabolic process3.85E-02
232GO:0010020: chloroplast fission3.85E-02
233GO:0010223: secondary shoot formation3.85E-02
234GO:0080167: response to karrikin4.14E-02
235GO:0080188: RNA-directed DNA methylation4.18E-02
236GO:0010167: response to nitrate4.18E-02
237GO:0090351: seedling development4.18E-02
238GO:0046854: phosphatidylinositol phosphorylation4.18E-02
239GO:0034599: cellular response to oxidative stress4.20E-02
240GO:0006071: glycerol metabolic process4.52E-02
241GO:0006833: water transport4.52E-02
242GO:0080147: root hair cell development4.86E-02
243GO:0000027: ribosomal large subunit assembly4.86E-02
244GO:0051017: actin filament bundle assembly4.86E-02
245GO:0005992: trehalose biosynthetic process4.86E-02
246GO:0005975: carbohydrate metabolic process4.93E-02
RankGO TermAdjusted P value
1GO:0070009: serine-type aminopeptidase activity0.00E+00
2GO:0052834: inositol monophosphate phosphatase activity0.00E+00
3GO:0071633: dihydroceramidase activity0.00E+00
4GO:0061711: N(6)-L-threonylcarbamoyladenine synthase0.00E+00
5GO:0047661: amino-acid racemase activity0.00E+00
6GO:0004056: argininosuccinate lyase activity0.00E+00
7GO:0004401: histidinol-phosphatase activity0.00E+00
8GO:0004519: endonuclease activity2.07E-05
9GO:0004674: protein serine/threonine kinase activity9.62E-05
10GO:0009672: auxin:proton symporter activity2.21E-04
11GO:0016762: xyloglucan:xyloglucosyl transferase activity4.40E-04
12GO:0010329: auxin efflux transmembrane transporter activity4.86E-04
13GO:0010347: L-galactose-1-phosphate phosphatase activity8.42E-04
14GO:0004016: adenylate cyclase activity8.42E-04
15GO:0016274: protein-arginine N-methyltransferase activity8.42E-04
16GO:0042834: peptidoglycan binding8.42E-04
17GO:0008676: 3-deoxy-8-phosphooctulonate synthase activity8.42E-04
18GO:0016422: mRNA (2'-O-methyladenosine-N6-)-methyltransferase activity8.42E-04
19GO:0004156: dihydropteroate synthase activity8.42E-04
20GO:0052906: tRNA (guanine(37)-N(1))-methyltransferase activity8.42E-04
21GO:0003848: 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase activity8.42E-04
22GO:0005290: L-histidine transmembrane transporter activity8.42E-04
23GO:0004008: copper-exporting ATPase activity8.42E-04
24GO:0004071: aspartate-ammonia ligase activity8.42E-04
25GO:0030785: [ribulose-bisphosphate carboxylase]-lysine N-methyltransferase activity8.42E-04
26GO:0004830: tryptophan-tRNA ligase activity8.42E-04
27GO:0033946: xyloglucan-specific endo-beta-1,4-glucanase activity8.42E-04
28GO:0010285: L,L-diaminopimelate aminotransferase activity8.42E-04
29GO:0052381: tRNA dimethylallyltransferase activity8.42E-04
30GO:0004124: cysteine synthase activity8.68E-04
31GO:0016798: hydrolase activity, acting on glycosyl bonds1.01E-03
32GO:0016301: kinase activity1.57E-03
33GO:0016415: octanoyltransferase activity1.83E-03
34GO:0052832: inositol monophosphate 3-phosphatase activity1.83E-03
35GO:0008805: carbon-monoxide oxygenase activity1.83E-03
36GO:0008934: inositol monophosphate 1-phosphatase activity1.83E-03
37GO:0052833: inositol monophosphate 4-phosphatase activity1.83E-03
38GO:0000064: L-ornithine transmembrane transporter activity1.83E-03
39GO:0015929: hexosaminidase activity1.83E-03
40GO:0004563: beta-N-acetylhexosaminidase activity1.83E-03
41GO:0000179: rRNA (adenine-N6,N6-)-dimethyltransferase activity1.83E-03
42GO:0017118: lipoyltransferase activity1.83E-03
43GO:0009884: cytokinin receptor activity1.83E-03
44GO:0004066: asparagine synthase (glutamine-hydrolyzing) activity1.83E-03
45GO:0003723: RNA binding1.87E-03
46GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds2.81E-03
47GO:0070180: large ribosomal subunit rRNA binding3.03E-03
48GO:0070330: aromatase activity3.03E-03
49GO:0017150: tRNA dihydrouridine synthase activity3.03E-03
50GO:0042781: 3'-tRNA processing endoribonuclease activity3.03E-03
51GO:0005034: osmosensor activity3.03E-03
52GO:0005262: calcium channel activity4.25E-03
53GO:0001872: (1->3)-beta-D-glucan binding4.41E-03
54GO:0015189: L-lysine transmembrane transporter activity4.41E-03
55GO:0009041: uridylate kinase activity4.41E-03
56GO:0015181: arginine transmembrane transporter activity4.41E-03
57GO:0035197: siRNA binding4.41E-03
58GO:0004845: uracil phosphoribosyltransferase activity5.97E-03
59GO:0004345: glucose-6-phosphate dehydrogenase activity5.97E-03
60GO:0004650: polygalacturonase activity5.97E-03
61GO:0005253: anion channel activity5.97E-03
62GO:0019199: transmembrane receptor protein kinase activity5.97E-03
63GO:0046556: alpha-L-arabinofuranosidase activity5.97E-03
64GO:0004930: G-protein coupled receptor activity5.97E-03
65GO:0016279: protein-lysine N-methyltransferase activity5.97E-03
66GO:0008725: DNA-3-methyladenine glycosylase activity7.68E-03
67GO:0004372: glycine hydroxymethyltransferase activity7.68E-03
68GO:0004888: transmembrane signaling receptor activity7.68E-03
69GO:0018685: alkane 1-monooxygenase activity7.68E-03
70GO:0016773: phosphotransferase activity, alcohol group as acceptor7.68E-03
71GO:0070696: transmembrane receptor protein serine/threonine kinase binding7.68E-03
72GO:0005247: voltage-gated chloride channel activity9.56E-03
73GO:0030983: mismatched DNA binding9.56E-03
74GO:0004605: phosphatidate cytidylyltransferase activity9.56E-03
75GO:1990714: hydroxyproline O-galactosyltransferase activity9.56E-03
76GO:0031177: phosphopantetheine binding9.56E-03
77GO:0008519: ammonium transmembrane transporter activity9.56E-03
78GO:0004672: protein kinase activity9.57E-03
79GO:0003735: structural constituent of ribosome9.83E-03
80GO:0004812: aminoacyl-tRNA ligase activity1.16E-02
81GO:0008195: phosphatidate phosphatase activity1.16E-02
82GO:0004849: uridine kinase activity1.16E-02
83GO:0045156: electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity1.16E-02
84GO:0000035: acyl binding1.16E-02
85GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity1.16E-02
86GO:0004656: procollagen-proline 4-dioxygenase activity1.16E-02
87GO:0019900: kinase binding1.16E-02
88GO:0000036: ACP phosphopantetheine attachment site binding involved in fatty acid biosynthetic process1.60E-02
89GO:0008173: RNA methyltransferase activity1.85E-02
90GO:0003918: DNA topoisomerase type II (ATP-hydrolyzing) activity1.85E-02
91GO:0005375: copper ion transmembrane transporter activity1.85E-02
92GO:0005524: ATP binding1.87E-02
93GO:0000156: phosphorelay response regulator activity1.91E-02
94GO:0004871: signal transducer activity2.02E-02
95GO:0008889: glycerophosphodiester phosphodiesterase activity2.10E-02
96GO:0004673: protein histidine kinase activity2.64E-02
97GO:0004805: trehalose-phosphatase activity2.64E-02
98GO:0008168: methyltransferase activity2.87E-02
99GO:0005089: Rho guanyl-nucleotide exchange factor activity2.93E-02
100GO:0016788: hydrolase activity, acting on ester bonds3.12E-02
101GO:0004521: endoribonuclease activity3.23E-02
102GO:0031072: heat shock protein binding3.54E-02
103GO:0000155: phosphorelay sensor kinase activity3.54E-02
104GO:0009982: pseudouridine synthase activity3.54E-02
105GO:0003725: double-stranded RNA binding3.54E-02
106GO:0004022: alcohol dehydrogenase (NAD) activity3.54E-02
107GO:0015662: ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism3.54E-02
108GO:0004089: carbonate dehydratase activity3.54E-02
109GO:0019843: rRNA binding3.59E-02
110GO:0042973: glucan endo-1,3-beta-D-glucosidase activity3.85E-02
111GO:0016829: lyase activity3.95E-02
112GO:0016706: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors4.02E-02
113GO:0030170: pyridoxal phosphate binding4.08E-02
114GO:0030246: carbohydrate binding4.75E-02
115GO:0052689: carboxylic ester hydrolase activity4.78E-02
116GO:0031418: L-ascorbic acid binding4.86E-02
117GO:0004675: transmembrane receptor protein serine/threonine kinase activity4.89E-02
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Gene type



Gene DE type