Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT4G33680

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0042817: pyridoxal metabolic process0.00E+00
2GO:0007638: mechanosensory behavior0.00E+00
3GO:0046396: D-galacturonate metabolic process0.00E+00
4GO:1905177: tracheary element differentiation0.00E+00
5GO:0006399: tRNA metabolic process0.00E+00
6GO:0006429: leucyl-tRNA aminoacylation0.00E+00
7GO:1905421: regulation of plant organ morphogenesis0.00E+00
8GO:0043488: regulation of mRNA stability0.00E+00
9GO:0030155: regulation of cell adhesion0.00E+00
10GO:0032194: ubiquinone biosynthetic process via 3,4-dihydroxy-5-polyprenylbenzoate0.00E+00
11GO:0010422: regulation of brassinosteroid biosynthetic process0.00E+00
12GO:0018131: oxazole or thiazole biosynthetic process0.00E+00
13GO:0090071: negative regulation of ribosome biogenesis0.00E+00
14GO:0031116: positive regulation of microtubule polymerization0.00E+00
15GO:0009157: deoxyribonucleoside monophosphate biosynthetic process0.00E+00
16GO:0009658: chloroplast organization1.03E-11
17GO:0006418: tRNA aminoacylation for protein translation1.29E-05
18GO:0000373: Group II intron splicing3.30E-05
19GO:0010020: chloroplast fission1.30E-04
20GO:0009793: embryo development ending in seed dormancy1.98E-04
21GO:0048528: post-embryonic root development3.80E-04
22GO:0006438: valyl-tRNA aminoacylation4.07E-04
23GO:0010480: microsporocyte differentiation4.07E-04
24GO:0042547: cell wall modification involved in multidimensional cell growth4.07E-04
25GO:0042371: vitamin K biosynthetic process4.07E-04
26GO:0006436: tryptophanyl-tRNA aminoacylation4.07E-04
27GO:0005991: trehalose metabolic process4.07E-04
28GO:0006747: FAD biosynthetic process4.07E-04
29GO:0006419: alanyl-tRNA aminoacylation4.07E-04
30GO:0000476: maturation of 4.5S rRNA4.07E-04
31GO:0000967: rRNA 5'-end processing4.07E-04
32GO:0070509: calcium ion import4.07E-04
33GO:0072684: mitochondrial tRNA 3'-trailer cleavage, endonucleolytic4.07E-04
34GO:0009790: embryo development4.60E-04
35GO:0070413: trehalose metabolism in response to stress4.76E-04
36GO:0006508: proteolysis5.20E-04
37GO:0009657: plastid organization5.80E-04
38GO:0032502: developmental process7.53E-04
39GO:0009220: pyrimidine ribonucleotide biosynthetic process8.83E-04
40GO:1904143: positive regulation of carotenoid biosynthetic process8.83E-04
41GO:0009786: regulation of asymmetric cell division8.83E-04
42GO:0034470: ncRNA processing8.83E-04
43GO:0006739: NADP metabolic process8.83E-04
44GO:1900871: chloroplast mRNA modification8.83E-04
45GO:0060359: response to ammonium ion8.83E-04
46GO:1902326: positive regulation of chlorophyll biosynthetic process8.83E-04
47GO:0045037: protein import into chloroplast stroma1.25E-03
48GO:0010623: programmed cell death involved in cell development1.43E-03
49GO:0042780: tRNA 3'-end processing1.43E-03
50GO:0001578: microtubule bundle formation1.43E-03
51GO:0043157: response to cation stress1.43E-03
52GO:0005977: glycogen metabolic process1.43E-03
53GO:0034414: tRNA 3'-trailer cleavage, endonucleolytic1.43E-03
54GO:0045910: negative regulation of DNA recombination1.43E-03
55GO:0048281: inflorescence morphogenesis1.43E-03
56GO:0006954: inflammatory response1.43E-03
57GO:0010207: photosystem II assembly1.61E-03
58GO:0070588: calcium ion transmembrane transport1.80E-03
59GO:0051289: protein homotetramerization2.07E-03
60GO:0006164: purine nucleotide biosynthetic process2.07E-03
61GO:0031048: chromatin silencing by small RNA2.07E-03
62GO:0010148: transpiration2.07E-03
63GO:0043572: plastid fission2.07E-03
64GO:2001141: regulation of RNA biosynthetic process2.07E-03
65GO:0016556: mRNA modification2.07E-03
66GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly2.07E-03
67GO:0051513: regulation of monopolar cell growth2.07E-03
68GO:0007231: osmosensory signaling pathway2.07E-03
69GO:0051085: chaperone mediated protein folding requiring cofactor2.07E-03
70GO:0051639: actin filament network formation2.07E-03
71GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway2.07E-03
72GO:0009226: nucleotide-sugar biosynthetic process2.07E-03
73GO:0044211: CTP salvage2.07E-03
74GO:0008615: pyridoxine biosynthetic process2.07E-03
75GO:0019048: modulation by virus of host morphology or physiology2.07E-03
76GO:0046739: transport of virus in multicellular host2.07E-03
77GO:2000904: regulation of starch metabolic process2.07E-03
78GO:0005992: trehalose biosynthetic process2.22E-03
79GO:0040008: regulation of growth2.72E-03
80GO:0006734: NADH metabolic process2.78E-03
81GO:0044205: 'de novo' UMP biosynthetic process2.78E-03
82GO:0051567: histone H3-K9 methylation2.78E-03
83GO:0010508: positive regulation of autophagy2.78E-03
84GO:0007020: microtubule nucleation2.78E-03
85GO:0044206: UMP salvage2.78E-03
86GO:0010021: amylopectin biosynthetic process2.78E-03
87GO:0009165: nucleotide biosynthetic process2.78E-03
88GO:0051764: actin crosslink formation2.78E-03
89GO:0051322: anaphase2.78E-03
90GO:0033500: carbohydrate homeostasis2.78E-03
91GO:0006730: one-carbon metabolic process2.95E-03
92GO:0010236: plastoquinone biosynthetic process3.56E-03
93GO:0010158: abaxial cell fate specification3.56E-03
94GO:0016131: brassinosteroid metabolic process3.56E-03
95GO:0046785: microtubule polymerization3.56E-03
96GO:0032543: mitochondrial translation3.56E-03
97GO:0007166: cell surface receptor signaling pathway3.58E-03
98GO:0009664: plant-type cell wall organization3.84E-03
99GO:0016458: gene silencing4.41E-03
100GO:0006206: pyrimidine nucleobase metabolic process4.41E-03
101GO:0018258: protein O-linked glycosylation via hydroxyproline4.41E-03
102GO:0009228: thiamine biosynthetic process4.41E-03
103GO:0010405: arabinogalactan protein metabolic process4.41E-03
104GO:0009959: negative gravitropism4.41E-03
105GO:0006655: phosphatidylglycerol biosynthetic process4.41E-03
106GO:0006139: nucleobase-containing compound metabolic process4.41E-03
107GO:0042793: transcription from plastid promoter4.41E-03
108GO:0009646: response to absence of light4.76E-03
109GO:0042026: protein refolding5.31E-03
110GO:0009942: longitudinal axis specification5.31E-03
111GO:0030488: tRNA methylation5.31E-03
112GO:1901259: chloroplast rRNA processing5.31E-03
113GO:0080086: stamen filament development5.31E-03
114GO:0042372: phylloquinone biosynthetic process5.31E-03
115GO:0017148: negative regulation of translation5.31E-03
116GO:0046835: carbohydrate phosphorylation5.31E-03
117GO:0010583: response to cyclopentenone5.85E-03
118GO:0006400: tRNA modification6.28E-03
119GO:0006207: 'de novo' pyrimidine nucleobase biosynthetic process6.28E-03
120GO:0010103: stomatal complex morphogenesis6.28E-03
121GO:0009772: photosynthetic electron transport in photosystem II6.28E-03
122GO:0070370: cellular heat acclimation6.28E-03
123GO:0010050: vegetative phase change6.28E-03
124GO:0048437: floral organ development6.28E-03
125GO:0010444: guard mother cell differentiation6.28E-03
126GO:0009828: plant-type cell wall loosening6.64E-03
127GO:0009734: auxin-activated signaling pathway7.08E-03
128GO:0009704: de-etiolation7.30E-03
129GO:0042255: ribosome assembly7.30E-03
130GO:0046620: regulation of organ growth7.30E-03
131GO:0006353: DNA-templated transcription, termination7.30E-03
132GO:0045010: actin nucleation7.30E-03
133GO:0009231: riboflavin biosynthetic process7.30E-03
134GO:0052543: callose deposition in cell wall7.30E-03
135GO:0048564: photosystem I assembly7.30E-03
136GO:0009850: auxin metabolic process7.30E-03
137GO:0051607: defense response to virus7.48E-03
138GO:0010027: thylakoid membrane organization7.93E-03
139GO:0010497: plasmodesmata-mediated intercellular transport8.38E-03
140GO:0007389: pattern specification process8.38E-03
141GO:0001558: regulation of cell growth8.38E-03
142GO:0071482: cellular response to light stimulus8.38E-03
143GO:0010052: guard cell differentiation8.38E-03
144GO:0009827: plant-type cell wall modification8.38E-03
145GO:0009627: systemic acquired resistance8.86E-03
146GO:0006468: protein phosphorylation8.95E-03
147GO:0000902: cell morphogenesis9.51E-03
148GO:0009051: pentose-phosphate shunt, oxidative branch9.51E-03
149GO:0006098: pentose-phosphate shunt9.51E-03
150GO:0031425: chloroplast RNA processing1.07E-02
151GO:0005975: carbohydrate metabolic process1.07E-02
152GO:0009638: phototropism1.07E-02
153GO:0009098: leucine biosynthetic process1.07E-02
154GO:0000160: phosphorelay signal transduction system1.09E-02
155GO:0030422: production of siRNA involved in RNA interference1.19E-02
156GO:0048829: root cap development1.19E-02
157GO:0045036: protein targeting to chloroplast1.19E-02
158GO:0009641: shade avoidance1.19E-02
159GO:0006298: mismatch repair1.19E-02
160GO:0006949: syncytium formation1.19E-02
161GO:0006259: DNA metabolic process1.19E-02
162GO:0016310: phosphorylation1.21E-02
163GO:0006352: DNA-templated transcription, initiation1.32E-02
164GO:0006415: translational termination1.32E-02
165GO:0048229: gametophyte development1.32E-02
166GO:0006265: DNA topological change1.32E-02
167GO:0006816: calcium ion transport1.32E-02
168GO:0009773: photosynthetic electron transport in photosystem I1.32E-02
169GO:0009451: RNA modification1.37E-02
170GO:0016024: CDP-diacylglycerol biosynthetic process1.46E-02
171GO:0010582: floral meristem determinacy1.46E-02
172GO:0006006: glucose metabolic process1.59E-02
173GO:0009785: blue light signaling pathway1.59E-02
174GO:0030036: actin cytoskeleton organization1.59E-02
175GO:0050826: response to freezing1.59E-02
176GO:0010075: regulation of meristem growth1.59E-02
177GO:0006094: gluconeogenesis1.59E-02
178GO:0009767: photosynthetic electron transport chain1.59E-02
179GO:0010628: positive regulation of gene expression1.59E-02
180GO:0009926: auxin polar transport1.70E-02
181GO:0009934: regulation of meristem structural organization1.74E-02
182GO:0071732: cellular response to nitric oxide1.88E-02
183GO:0090351: seedling development1.88E-02
184GO:0006855: drug transmembrane transport1.99E-02
185GO:0051017: actin filament bundle assembly2.19E-02
186GO:0007010: cytoskeleton organization2.19E-02
187GO:0009116: nucleoside metabolic process2.19E-02
188GO:0009944: polarity specification of adaxial/abaxial axis2.19E-02
189GO:0006364: rRNA processing2.30E-02
190GO:0009736: cytokinin-activated signaling pathway2.30E-02
191GO:0043622: cortical microtubule organization2.35E-02
192GO:0006825: copper ion transport2.35E-02
193GO:0051302: regulation of cell division2.35E-02
194GO:0019953: sexual reproduction2.35E-02
195GO:0051603: proteolysis involved in cellular protein catabolic process2.38E-02
196GO:0006306: DNA methylation2.51E-02
197GO:0006417: regulation of translation2.55E-02
198GO:0007005: mitochondrion organization2.68E-02
199GO:0031348: negative regulation of defense response2.68E-02
200GO:0009814: defense response, incompatible interaction2.68E-02
201GO:0048316: seed development2.81E-02
202GO:0071369: cellular response to ethylene stimulus2.85E-02
203GO:0001944: vasculature development2.85E-02
204GO:0006012: galactose metabolic process2.85E-02
205GO:0009831: plant-type cell wall modification involved in multidimensional cell growth2.85E-02
206GO:0010082: regulation of root meristem growth2.85E-02
207GO:0010089: xylem development3.03E-02
208GO:0009789: positive regulation of abscisic acid-activated signaling pathway3.21E-02
209GO:0009416: response to light stimulus3.34E-02
210GO:0008033: tRNA processing3.39E-02
211GO:0048653: anther development3.39E-02
212GO:0009742: brassinosteroid mediated signaling pathway3.47E-02
213GO:0006662: glycerol ether metabolic process3.58E-02
214GO:0010182: sugar mediated signaling pathway3.58E-02
215GO:0048868: pollen tube development3.58E-02
216GO:0006342: chromatin silencing3.58E-02
217GO:0009741: response to brassinosteroid3.58E-02
218GO:0009958: positive gravitropism3.58E-02
219GO:0048544: recognition of pollen3.77E-02
220GO:0007059: chromosome segregation3.77E-02
221GO:0019252: starch biosynthetic process3.96E-02
222GO:0008654: phospholipid biosynthetic process3.96E-02
223GO:0016132: brassinosteroid biosynthetic process4.15E-02
224GO:0000302: response to reactive oxygen species4.15E-02
225GO:0009733: response to auxin4.24E-02
226GO:0009058: biosynthetic process4.31E-02
227GO:0009630: gravitropism4.35E-02
228GO:0016032: viral process4.35E-02
229GO:0071281: cellular response to iron ion4.55E-02
230GO:0010090: trichome morphogenesis4.55E-02
231GO:0016042: lipid catabolic process4.71E-02
232GO:0010252: auxin homeostasis4.76E-02
RankGO TermAdjusted P value
1GO:0046428: 1,4-dihydroxy-2-naphthoate octaprenyltransferase activity0.00E+00
2GO:0004823: leucine-tRNA ligase activity0.00E+00
3GO:0047661: amino-acid racemase activity0.00E+00
4GO:0004056: argininosuccinate lyase activity0.00E+00
5GO:0070009: serine-type aminopeptidase activity0.00E+00
6GO:0019136: deoxynucleoside kinase activity0.00E+00
7GO:0003937: IMP cyclohydrolase activity0.00E+00
8GO:0047912: galacturonokinase activity0.00E+00
9GO:0004588: orotate phosphoribosyltransferase activity0.00E+00
10GO:0004590: orotidine-5'-phosphate decarboxylase activity0.00E+00
11GO:0004643: phosphoribosylaminoimidazolecarboxamide formyltransferase activity0.00E+00
12GO:0004176: ATP-dependent peptidase activity4.83E-07
13GO:0005525: GTP binding1.23E-05
14GO:0004812: aminoacyl-tRNA ligase activity3.24E-05
15GO:0001872: (1->3)-beta-D-glucan binding5.61E-05
16GO:0019199: transmembrane receptor protein kinase activity9.87E-05
17GO:0008237: metallopeptidase activity1.07E-04
18GO:0016773: phosphotransferase activity, alcohol group as acceptor1.53E-04
19GO:0016829: lyase activity4.00E-04
20GO:0004008: copper-exporting ATPase activity4.07E-04
21GO:0004832: valine-tRNA ligase activity4.07E-04
22GO:0030785: [ribulose-bisphosphate carboxylase]-lysine N-methyltransferase activity4.07E-04
23GO:0052857: NADPHX epimerase activity4.07E-04
24GO:0004830: tryptophan-tRNA ligase activity4.07E-04
25GO:0052856: NADHX epimerase activity4.07E-04
26GO:0050139: nicotinate-N-glucosyltransferase activity4.07E-04
27GO:0005227: calcium activated cation channel activity4.07E-04
28GO:0004733: pyridoxamine-phosphate oxidase activity4.07E-04
29GO:0052906: tRNA (guanine(37)-N(1))-methyltransferase activity4.07E-04
30GO:0004813: alanine-tRNA ligase activity4.07E-04
31GO:0015929: hexosaminidase activity8.83E-04
32GO:0004563: beta-N-acetylhexosaminidase activity8.83E-04
33GO:0003852: 2-isopropylmalate synthase activity8.83E-04
34GO:0004326: tetrahydrofolylpolyglutamate synthase activity8.83E-04
35GO:0019156: isoamylase activity8.83E-04
36GO:0003919: FMN adenylyltransferase activity8.83E-04
37GO:0005262: calcium channel activity1.42E-03
38GO:0002161: aminoacyl-tRNA editing activity1.43E-03
39GO:0042781: 3'-tRNA processing endoribonuclease activity1.43E-03
40GO:0046524: sucrose-phosphate synthase activity1.43E-03
41GO:0070330: aromatase activity1.43E-03
42GO:0004222: metalloendopeptidase activity1.74E-03
43GO:0005524: ATP binding1.75E-03
44GO:0035197: siRNA binding2.07E-03
45GO:0043023: ribosomal large subunit binding2.07E-03
46GO:0003825: alpha,alpha-trehalose-phosphate synthase (UDP-forming) activity2.07E-03
47GO:0004675: transmembrane receptor protein serine/threonine kinase activity2.62E-03
48GO:0042277: peptide binding2.78E-03
49GO:0004335: galactokinase activity2.78E-03
50GO:0004659: prenyltransferase activity2.78E-03
51GO:0001053: plastid sigma factor activity2.78E-03
52GO:0004845: uracil phosphoribosyltransferase activity2.78E-03
53GO:0004345: glucose-6-phosphate dehydrogenase activity2.78E-03
54GO:0016987: sigma factor activity2.78E-03
55GO:0030570: pectate lyase activity3.22E-03
56GO:0005275: amine transmembrane transporter activity3.56E-03
57GO:0018685: alkane 1-monooxygenase activity3.56E-03
58GO:0003924: GTPase activity3.89E-03
59GO:0030983: mismatched DNA binding4.41E-03
60GO:0004605: phosphatidate cytidylyltransferase activity4.41E-03
61GO:1990714: hydroxyproline O-galactosyltransferase activity4.41E-03
62GO:0004332: fructose-bisphosphate aldolase activity4.41E-03
63GO:0004556: alpha-amylase activity4.41E-03
64GO:0004519: endonuclease activity4.51E-03
65GO:0004656: procollagen-proline 4-dioxygenase activity5.31E-03
66GO:0008195: phosphatidate phosphatase activity5.31E-03
67GO:0004849: uridine kinase activity5.31E-03
68GO:0003730: mRNA 3'-UTR binding5.31E-03
69GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds5.52E-03
70GO:0000156: phosphorelay response regulator activity6.23E-03
71GO:0051015: actin filament binding6.23E-03
72GO:0016301: kinase activity6.43E-03
73GO:0016791: phosphatase activity6.64E-03
74GO:0043022: ribosome binding7.30E-03
75GO:0016597: amino acid binding7.48E-03
76GO:0016887: ATPase activity8.37E-03
77GO:0003918: DNA topoisomerase type II (ATP-hydrolyzing) activity8.38E-03
78GO:0005375: copper ion transmembrane transporter activity8.38E-03
79GO:0019843: rRNA binding8.80E-03
80GO:0030247: polysaccharide binding9.35E-03
81GO:0003747: translation release factor activity9.51E-03
82GO:0009672: auxin:proton symporter activity1.07E-02
83GO:0015238: drug transmembrane transporter activity1.09E-02
84GO:0004713: protein tyrosine kinase activity1.19E-02
85GO:0004805: trehalose-phosphatase activity1.19E-02
86GO:0016614: oxidoreductase activity, acting on CH-OH group of donors1.20E-02
87GO:0044183: protein binding involved in protein folding1.32E-02
88GO:0000049: tRNA binding1.46E-02
89GO:0004521: endoribonuclease activity1.46E-02
90GO:0010329: auxin efflux transmembrane transporter activity1.59E-02
91GO:0015662: ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism1.59E-02
92GO:0004089: carbonate dehydratase activity1.59E-02
93GO:0004565: beta-galactosidase activity1.59E-02
94GO:0004185: serine-type carboxypeptidase activity1.70E-02
95GO:0042973: glucan endo-1,3-beta-D-glucosidase activity1.74E-02
96GO:0030246: carbohydrate binding1.77E-02
97GO:0043621: protein self-association1.84E-02
98GO:0003723: RNA binding1.93E-02
99GO:0031418: L-ascorbic acid binding2.19E-02
100GO:0005345: purine nucleobase transmembrane transporter activity2.35E-02
101GO:0016788: hydrolase activity, acting on ester bonds2.36E-02
102GO:0008408: 3'-5' exonuclease activity2.51E-02
103GO:0035251: UDP-glucosyltransferase activity2.51E-02
104GO:0033612: receptor serine/threonine kinase binding2.51E-02
105GO:0004674: protein serine/threonine kinase activity2.66E-02
106GO:0004650: polygalacturonase activity2.99E-02
107GO:0003727: single-stranded RNA binding3.03E-02
108GO:0047134: protein-disulfide reductase activity3.21E-02
109GO:0052689: carboxylic ester hydrolase activity3.42E-02
110GO:0004527: exonuclease activity3.58E-02
111GO:0010181: FMN binding3.77E-02
112GO:0004791: thioredoxin-disulfide reductase activity3.77E-02
113GO:0050662: coenzyme binding3.77E-02
114GO:0042803: protein homodimerization activity4.00E-02
115GO:0005215: transporter activity4.14E-02
116GO:0016762: xyloglucan:xyloglucosyl transferase activity4.15E-02
117GO:0004252: serine-type endopeptidase activity4.53E-02
118GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor4.55E-02
119GO:0003684: damaged DNA binding4.76E-02
120GO:0008565: protein transporter activity4.88E-02
121GO:0016722: oxidoreductase activity, oxidizing metal ions4.97E-02
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Gene type



Gene DE type