Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT4G33625

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0090470: shoot organ boundary specification0.00E+00
2GO:0090279: regulation of calcium ion import0.00E+00
3GO:0006114: glycerol biosynthetic process0.00E+00
4GO:0052865: 1-deoxy-D-xylulose 5-phosphate biosynthetic process0.00E+00
5GO:0071474: cellular hyperosmotic response0.00E+00
6GO:0034337: RNA folding0.00E+00
7GO:1901918: negative regulation of exoribonuclease activity0.00E+00
8GO:0070681: glutaminyl-tRNAGln biosynthesis via transamidation0.00E+00
9GO:0015995: chlorophyll biosynthetic process1.28E-08
10GO:0010207: photosystem II assembly3.42E-06
11GO:2001141: regulation of RNA biosynthetic process4.58E-05
12GO:0055114: oxidation-reduction process1.26E-04
13GO:0042549: photosystem II stabilization1.82E-04
14GO:0006631: fatty acid metabolic process3.12E-04
15GO:0009395: phospholipid catabolic process3.19E-04
16GO:1902478: negative regulation of defense response to bacterium, incompatible interaction3.63E-04
17GO:0031426: polycistronic mRNA processing3.63E-04
18GO:0010426: DNA methylation on cytosine within a CHH sequence3.63E-04
19GO:0000481: maturation of 5S rRNA3.63E-04
20GO:0015801: aromatic amino acid transport3.63E-04
21GO:0043686: co-translational protein modification3.63E-04
22GO:0043087: regulation of GTPase activity3.63E-04
23GO:0071461: cellular response to redox state3.63E-04
24GO:0046167: glycerol-3-phosphate biosynthetic process3.63E-04
25GO:1902458: positive regulation of stomatal opening3.63E-04
26GO:0048363: mucilage pectin metabolic process3.63E-04
27GO:0010362: negative regulation of anion channel activity by blue light3.63E-04
28GO:0015969: guanosine tetraphosphate metabolic process3.63E-04
29GO:0016559: peroxisome fission4.01E-04
30GO:0071482: cellular response to light stimulus4.91E-04
31GO:0035304: regulation of protein dephosphorylation7.89E-04
32GO:0080005: photosystem stoichiometry adjustment7.89E-04
33GO:0006435: threonyl-tRNA aminoacylation7.89E-04
34GO:0010541: acropetal auxin transport7.89E-04
35GO:0006650: glycerophospholipid metabolic process7.89E-04
36GO:0000256: allantoin catabolic process7.89E-04
37GO:0071668: plant-type cell wall assembly7.89E-04
38GO:0080183: response to photooxidative stress7.89E-04
39GO:0010155: regulation of proton transport7.89E-04
40GO:1903426: regulation of reactive oxygen species biosynthetic process7.89E-04
41GO:0051262: protein tetramerization7.89E-04
42GO:0019684: photosynthesis, light reaction9.32E-04
43GO:0006352: DNA-templated transcription, initiation9.32E-04
44GO:0016024: CDP-diacylglycerol biosynthetic process1.06E-03
45GO:0009725: response to hormone1.20E-03
46GO:0046168: glycerol-3-phosphate catabolic process1.28E-03
47GO:0010136: ureide catabolic process1.28E-03
48GO:0034051: negative regulation of plant-type hypersensitive response1.28E-03
49GO:0010160: formation of animal organ boundary1.28E-03
50GO:0044375: regulation of peroxisome size1.28E-03
51GO:0046621: negative regulation of organ growth1.28E-03
52GO:0009266: response to temperature stimulus1.36E-03
53GO:0010143: cutin biosynthetic process1.36E-03
54GO:0009637: response to blue light1.67E-03
55GO:0006072: glycerol-3-phosphate metabolic process1.84E-03
56GO:0033014: tetrapyrrole biosynthetic process1.84E-03
57GO:0006145: purine nucleobase catabolic process1.84E-03
58GO:0006424: glutamyl-tRNA aminoacylation1.84E-03
59GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly1.84E-03
60GO:0010371: regulation of gibberellin biosynthetic process1.84E-03
61GO:0009152: purine ribonucleotide biosynthetic process1.84E-03
62GO:0046653: tetrahydrofolate metabolic process1.84E-03
63GO:0010239: chloroplast mRNA processing1.84E-03
64GO:0043481: anthocyanin accumulation in tissues in response to UV light1.84E-03
65GO:0006633: fatty acid biosynthetic process1.94E-03
66GO:0032366: intracellular sterol transport2.47E-03
67GO:0009765: photosynthesis, light harvesting2.47E-03
68GO:0016120: carotene biosynthetic process3.16E-03
69GO:0032543: mitochondrial translation3.16E-03
70GO:0009904: chloroplast accumulation movement3.16E-03
71GO:0045038: protein import into chloroplast thylakoid membrane3.16E-03
72GO:0031365: N-terminal protein amino acid modification3.16E-03
73GO:0016123: xanthophyll biosynthetic process3.16E-03
74GO:0006465: signal peptide processing3.16E-03
75GO:0000304: response to singlet oxygen3.16E-03
76GO:0080110: sporopollenin biosynthetic process3.16E-03
77GO:0006655: phosphatidylglycerol biosynthetic process3.91E-03
78GO:0060918: auxin transport3.91E-03
79GO:0009920: cell plate formation involved in plant-type cell wall biogenesis3.91E-03
80GO:0009228: thiamine biosynthetic process3.91E-03
81GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway3.91E-03
82GO:0009658: chloroplast organization4.36E-03
83GO:1901259: chloroplast rRNA processing4.71E-03
84GO:0009903: chloroplast avoidance movement4.71E-03
85GO:0030488: tRNA methylation4.71E-03
86GO:0048437: floral organ development5.56E-03
87GO:0006400: tRNA modification5.56E-03
88GO:0042255: ribosome assembly6.46E-03
89GO:0006353: DNA-templated transcription, termination6.46E-03
90GO:0032508: DNA duplex unwinding6.46E-03
91GO:2000070: regulation of response to water deprivation6.46E-03
92GO:0007155: cell adhesion6.46E-03
93GO:0048564: photosystem I assembly6.46E-03
94GO:0010027: thylakoid membrane organization6.65E-03
95GO:0044550: secondary metabolite biosynthetic process6.86E-03
96GO:0015979: photosynthesis7.40E-03
97GO:0007186: G-protein coupled receptor signaling pathway7.41E-03
98GO:0009657: plastid organization7.41E-03
99GO:0006526: arginine biosynthetic process7.41E-03
100GO:0022900: electron transport chain7.41E-03
101GO:0015996: chlorophyll catabolic process7.41E-03
102GO:0016311: dephosphorylation8.26E-03
103GO:0006098: pentose-phosphate shunt8.41E-03
104GO:0090305: nucleic acid phosphodiester bond hydrolysis8.41E-03
105GO:0010206: photosystem II repair8.41E-03
106GO:0048507: meristem development8.41E-03
107GO:0006783: heme biosynthetic process8.41E-03
108GO:0051865: protein autoubiquitination8.41E-03
109GO:0000160: phosphorelay signal transduction system9.14E-03
110GO:0048354: mucilage biosynthetic process involved in seed coat development9.46E-03
111GO:0010205: photoinhibition9.46E-03
112GO:0009638: phototropism9.46E-03
113GO:0006779: porphyrin-containing compound biosynthetic process9.46E-03
114GO:0006811: ion transport9.60E-03
115GO:0010218: response to far red light9.60E-03
116GO:0007568: aging1.01E-02
117GO:0032259: methylation1.02E-02
118GO:0009299: mRNA transcription1.05E-02
119GO:0043069: negative regulation of programmed cell death1.05E-02
120GO:0007623: circadian rhythm1.06E-02
121GO:0009773: photosynthetic electron transport in photosystem I1.17E-02
122GO:0009089: lysine biosynthetic process via diaminopimelate1.17E-02
123GO:0008285: negative regulation of cell proliferation1.17E-02
124GO:0045037: protein import into chloroplast stroma1.29E-02
125GO:0008361: regulation of cell size1.29E-02
126GO:0009785: blue light signaling pathway1.41E-02
127GO:0009718: anthocyanin-containing compound biosynthetic process1.41E-02
128GO:0006094: gluconeogenesis1.41E-02
129GO:0009767: photosynthetic electron transport chain1.41E-02
130GO:0009640: photomorphogenesis1.43E-02
131GO:0010114: response to red light1.43E-02
132GO:0009744: response to sucrose1.43E-02
133GO:0010020: chloroplast fission1.53E-02
134GO:0010540: basipetal auxin transport1.53E-02
135GO:0034605: cellular response to heat1.53E-02
136GO:0007031: peroxisome organization1.66E-02
137GO:0010025: wax biosynthetic process1.80E-02
138GO:0006636: unsaturated fatty acid biosynthetic process1.80E-02
139GO:0006289: nucleotide-excision repair1.93E-02
140GO:0007017: microtubule-based process2.07E-02
141GO:0010073: meristem maintenance2.07E-02
142GO:0006306: DNA methylation2.22E-02
143GO:0031408: oxylipin biosynthetic process2.22E-02
144GO:0016114: terpenoid biosynthetic process2.22E-02
145GO:0003333: amino acid transmembrane transport2.22E-02
146GO:0016998: cell wall macromolecule catabolic process2.22E-02
147GO:0048511: rhythmic process2.22E-02
148GO:0010431: seed maturation2.22E-02
149GO:0061077: chaperone-mediated protein folding2.22E-02
150GO:0009735: response to cytokinin2.26E-02
151GO:0043086: negative regulation of catalytic activity2.28E-02
152GO:0006096: glycolytic process2.28E-02
153GO:0016226: iron-sulfur cluster assembly2.37E-02
154GO:0080092: regulation of pollen tube growth2.37E-02
155GO:0010017: red or far-red light signaling pathway2.37E-02
156GO:0010227: floral organ abscission2.52E-02
157GO:0009416: response to light stimulus2.58E-02
158GO:0048443: stamen development2.67E-02
159GO:0019722: calcium-mediated signaling2.67E-02
160GO:0010584: pollen exine formation2.67E-02
161GO:0006817: phosphate ion transport2.67E-02
162GO:0006396: RNA processing2.83E-02
163GO:0016117: carotenoid biosynthetic process2.83E-02
164GO:0042335: cuticle development2.99E-02
165GO:0000271: polysaccharide biosynthetic process2.99E-02
166GO:0009958: positive gravitropism3.16E-02
167GO:0045489: pectin biosynthetic process3.16E-02
168GO:0006520: cellular amino acid metabolic process3.16E-02
169GO:0010182: sugar mediated signaling pathway3.16E-02
170GO:0009741: response to brassinosteroid3.16E-02
171GO:0007018: microtubule-based movement3.32E-02
172GO:0009791: post-embryonic development3.49E-02
173GO:0008654: phospholipid biosynthetic process3.49E-02
174GO:0032502: developmental process3.84E-02
175GO:0007264: small GTPase mediated signal transduction3.84E-02
176GO:0009639: response to red or far red light4.20E-02
177GO:0007267: cell-cell signaling4.39E-02
178GO:0010286: heat acclimation4.39E-02
179GO:0016126: sterol biosynthetic process4.76E-02
180GO:0006810: transport4.93E-02
181GO:0010228: vegetative to reproductive phase transition of meristem4.94E-02
182GO:0009788: negative regulation of abscisic acid-activated signaling pathway4.95E-02
RankGO TermAdjusted P value
1GO:0071522: ureidoglycine aminohydrolase activity0.00E+00
2GO:0050613: delta14-sterol reductase activity0.00E+00
3GO:0045435: lycopene epsilon cyclase activity0.00E+00
4GO:0008942: nitrite reductase [NAD(P)H] activity0.00E+00
5GO:0043136: glycerol-3-phosphatase activity0.00E+00
6GO:0000121: glycerol-1-phosphatase activity0.00E+00
7GO:0047450: crotonoyl-[acyl-carrier-protein] hydratase activity0.00E+00
8GO:0046406: magnesium protoporphyrin IX methyltransferase activity0.00E+00
9GO:0009673: low-affinity phosphate transmembrane transporter activity0.00E+00
10GO:0019144: ADP-sugar diphosphatase activity0.00E+00
11GO:0016491: oxidoreductase activity8.73E-06
12GO:0016851: magnesium chelatase activity4.58E-05
13GO:0001053: plastid sigma factor activity8.11E-05
14GO:0016987: sigma factor activity8.11E-05
15GO:0000293: ferric-chelate reductase activity1.82E-04
16GO:0004366: glycerol-3-phosphate O-acyltransferase activity1.82E-04
17GO:0003993: acid phosphatase activity2.53E-04
18GO:0080042: ADP-glucose pyrophosphohydrolase activity3.63E-04
19GO:0080132: fatty acid alpha-hydroxylase activity3.63E-04
20GO:0009496: plastoquinol--plastocyanin reductase activity3.63E-04
21GO:0010242: oxygen evolving activity3.63E-04
22GO:0004325: ferrochelatase activity3.63E-04
23GO:0042586: peptide deformylase activity3.63E-04
24GO:0031957: very long-chain fatty acid-CoA ligase activity3.63E-04
25GO:0003942: N-acetyl-gamma-glutamyl-phosphate reductase activity3.63E-04
26GO:0005227: calcium activated cation channel activity3.63E-04
27GO:0050567: glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity3.63E-04
28GO:0004081: bis(5'-nucleosyl)-tetraphosphatase (asymmetrical) activity7.89E-04
29GO:0004829: threonine-tRNA ligase activity7.89E-04
30GO:0019171: 3-hydroxyacyl-[acyl-carrier-protein] dehydratase activity7.89E-04
31GO:0019172: glyoxalase III activity7.89E-04
32GO:0008839: 4-hydroxy-tetrahydrodipicolinate reductase7.89E-04
33GO:0008728: GTP diphosphokinase activity7.89E-04
34GO:0042389: omega-3 fatty acid desaturase activity7.89E-04
35GO:0080041: ADP-ribose pyrophosphohydrolase activity7.89E-04
36GO:0008661: 1-deoxy-D-xylulose-5-phosphate synthase activity7.89E-04
37GO:0015173: aromatic amino acid transmembrane transporter activity7.89E-04
38GO:0034432: bis(5'-adenosyl)-pentaphosphatase activity7.89E-04
39GO:0018708: thiol S-methyltransferase activity7.89E-04
40GO:0004565: beta-galactosidase activity1.20E-03
41GO:0005504: fatty acid binding1.28E-03
42GO:0003955: NAD(P)H dehydrogenase (quinone) activity1.28E-03
43GO:0030267: glyoxylate reductase (NADP) activity1.28E-03
44GO:0016742: hydroxymethyl-, formyl- and related transferase activity1.28E-03
45GO:0004367: glycerol-3-phosphate dehydrogenase [NAD+] activity1.28E-03
46GO:0008864: formyltetrahydrofolate deformylase activity1.28E-03
47GO:0016620: oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor1.28E-03
48GO:0004180: carboxypeptidase activity1.28E-03
49GO:0019843: rRNA binding1.37E-03
50GO:0048027: mRNA 5'-UTR binding1.84E-03
51GO:0016628: oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor1.84E-03
52GO:0009882: blue light photoreceptor activity1.84E-03
53GO:0005528: FK506 binding1.87E-03
54GO:0070628: proteasome binding2.47E-03
55GO:0045430: chalcone isomerase activity2.47E-03
56GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor2.47E-03
57GO:0003755: peptidyl-prolyl cis-trans isomerase activity2.80E-03
58GO:0003727: single-stranded RNA binding2.95E-03
59GO:0005275: amine transmembrane transporter activity3.16E-03
60GO:0031593: polyubiquitin binding3.91E-03
61GO:0004462: lactoylglutathione lyase activity3.91E-03
62GO:0090447: glycerol-3-phosphate 2-O-acyltransferase activity3.91E-03
63GO:0004332: fructose-bisphosphate aldolase activity3.91E-03
64GO:0004872: receptor activity4.30E-03
65GO:0016788: hydrolase activity, acting on ester bonds4.48E-03
66GO:0048038: quinone binding4.60E-03
67GO:0004616: phosphogluconate dehydrogenase (decarboxylating) activity4.71E-03
68GO:0102391: decanoate--CoA ligase activity4.71E-03
69GO:0005261: cation channel activity4.71E-03
70GO:0003886: DNA (cytosine-5-)-methyltransferase activity4.71E-03
71GO:0051920: peroxiredoxin activity4.71E-03
72GO:0004467: long-chain fatty acid-CoA ligase activity5.56E-03
73GO:0016787: hydrolase activity5.84E-03
74GO:0016209: antioxidant activity6.46E-03
75GO:0008173: RNA methyltransferase activity7.41E-03
76GO:0016717: oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water7.41E-03
77GO:0008236: serine-type peptidase activity8.26E-03
78GO:0071949: FAD binding8.41E-03
79GO:0030955: potassium ion binding9.46E-03
80GO:0004743: pyruvate kinase activity9.46E-03
81GO:0005089: Rho guanyl-nucleotide exchange factor activity1.17E-02
82GO:0010329: auxin efflux transmembrane transporter activity1.41E-02
83GO:0005315: inorganic phosphate transmembrane transporter activity1.41E-02
84GO:0000155: phosphorelay sensor kinase activity1.41E-02
85GO:0042802: identical protein binding1.44E-02
86GO:0042973: glucan endo-1,3-beta-D-glucosidase activity1.53E-02
87GO:0008266: poly(U) RNA binding1.53E-02
88GO:0031624: ubiquitin conjugating enzyme binding1.53E-02
89GO:0035091: phosphatidylinositol binding1.55E-02
90GO:0051537: 2 iron, 2 sulfur cluster binding1.55E-02
91GO:0051287: NAD binding1.73E-02
92GO:0005525: GTP binding1.85E-02
93GO:0003899: DNA-directed 5'-3' RNA polymerase activity1.93E-02
94GO:0051536: iron-sulfur cluster binding1.93E-02
95GO:0004857: enzyme inhibitor activity1.93E-02
96GO:0043130: ubiquitin binding1.93E-02
97GO:0003729: mRNA binding1.94E-02
98GO:0003690: double-stranded DNA binding2.00E-02
99GO:0016887: ATPase activity2.11E-02
100GO:0047262: polygalacturonate 4-alpha-galacturonosyltransferase activity2.37E-02
101GO:0030570: pectate lyase activity2.52E-02
102GO:0008080: N-acetyltransferase activity3.16E-02
103GO:0050662: coenzyme binding3.32E-02
104GO:0010181: FMN binding3.32E-02
105GO:0016709: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen3.34E-02
106GO:0004518: nuclease activity3.84E-02
107GO:0003924: GTPase activity3.94E-02
108GO:0000156: phosphorelay response regulator activity4.02E-02
109GO:0016791: phosphatase activity4.20E-02
110GO:0003684: damaged DNA binding4.20E-02
111GO:0005200: structural constituent of cytoskeleton4.39E-02
112GO:0046910: pectinesterase inhibitor activity4.41E-02
113GO:0046872: metal ion binding4.82E-02
114GO:0008017: microtubule binding4.94E-02
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Gene type



Gene DE type