GO Enrichment Analysis of Co-expressed Genes with
AT4G32900
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0035884: arabinan biosynthetic process | 0.00E+00 |
| 2 | GO:0097164: ammonium ion metabolic process | 0.00E+00 |
| 3 | GO:0090627: plant epidermal cell differentiation | 0.00E+00 |
| 4 | GO:0009606: tropism | 0.00E+00 |
| 5 | GO:0090615: mitochondrial mRNA processing | 0.00E+00 |
| 6 | GO:0042794: rRNA transcription from plastid promoter | 0.00E+00 |
| 7 | GO:0042793: transcription from plastid promoter | 4.85E-07 |
| 8 | GO:0009451: RNA modification | 4.54E-06 |
| 9 | GO:0009658: chloroplast organization | 1.49E-05 |
| 10 | GO:0009913: epidermal cell differentiation | 5.77E-05 |
| 11 | GO:1901259: chloroplast rRNA processing | 8.05E-05 |
| 12 | GO:0006955: immune response | 1.07E-04 |
| 13 | GO:0043247: telomere maintenance in response to DNA damage | 1.77E-04 |
| 14 | GO:0033044: regulation of chromosome organization | 1.77E-04 |
| 15 | GO:1903866: palisade mesophyll development | 1.77E-04 |
| 16 | GO:1905039: carboxylic acid transmembrane transport | 1.77E-04 |
| 17 | GO:1905200: gibberellic acid transmembrane transport | 1.77E-04 |
| 18 | GO:0034757: negative regulation of iron ion transport | 1.77E-04 |
| 19 | GO:0032204: regulation of telomere maintenance | 1.77E-04 |
| 20 | GO:0080112: seed growth | 1.77E-04 |
| 21 | GO:0070981: L-asparagine biosynthetic process | 4.01E-04 |
| 22 | GO:0010271: regulation of chlorophyll catabolic process | 4.01E-04 |
| 23 | GO:1904143: positive regulation of carotenoid biosynthetic process | 4.01E-04 |
| 24 | GO:0080009: mRNA methylation | 4.01E-04 |
| 25 | GO:0006529: asparagine biosynthetic process | 4.01E-04 |
| 26 | GO:0009875: pollen-pistil interaction | 4.01E-04 |
| 27 | GO:0010270: photosystem II oxygen evolving complex assembly | 4.01E-04 |
| 28 | GO:0010275: NAD(P)H dehydrogenase complex assembly | 4.01E-04 |
| 29 | GO:1902326: positive regulation of chlorophyll biosynthetic process | 4.01E-04 |
| 30 | GO:0010569: regulation of double-strand break repair via homologous recombination | 4.01E-04 |
| 31 | GO:0080117: secondary growth | 6.55E-04 |
| 32 | GO:0090391: granum assembly | 6.55E-04 |
| 33 | GO:0032504: multicellular organism reproduction | 6.55E-04 |
| 34 | GO:0000027: ribosomal large subunit assembly | 6.94E-04 |
| 35 | GO:0016998: cell wall macromolecule catabolic process | 8.37E-04 |
| 36 | GO:0009734: auxin-activated signaling pathway | 8.40E-04 |
| 37 | GO:0009800: cinnamic acid biosynthetic process | 9.34E-04 |
| 38 | GO:0080158: chloroplast ribulose bisphosphate carboxylase complex biogenesis | 9.34E-04 |
| 39 | GO:0007004: telomere maintenance via telomerase | 9.34E-04 |
| 40 | GO:0010371: regulation of gibberellin biosynthetic process | 9.34E-04 |
| 41 | GO:1902476: chloride transmembrane transport | 9.34E-04 |
| 42 | GO:0010239: chloroplast mRNA processing | 9.34E-04 |
| 43 | GO:2000038: regulation of stomatal complex development | 1.24E-03 |
| 44 | GO:0006346: methylation-dependent chromatin silencing | 1.24E-03 |
| 45 | GO:0009646: response to absence of light | 1.44E-03 |
| 46 | GO:0048825: cotyledon development | 1.55E-03 |
| 47 | GO:0048497: maintenance of floral organ identity | 1.57E-03 |
| 48 | GO:0006282: regulation of DNA repair | 1.57E-03 |
| 49 | GO:0032876: negative regulation of DNA endoreduplication | 1.57E-03 |
| 50 | GO:0030308: negative regulation of cell growth | 1.57E-03 |
| 51 | GO:0080156: mitochondrial mRNA modification | 1.65E-03 |
| 52 | GO:0032502: developmental process | 1.76E-03 |
| 53 | GO:0010315: auxin efflux | 1.94E-03 |
| 54 | GO:0006559: L-phenylalanine catabolic process | 1.94E-03 |
| 55 | GO:0048831: regulation of shoot system development | 1.94E-03 |
| 56 | GO:0010304: PSII associated light-harvesting complex II catabolic process | 1.94E-03 |
| 57 | GO:0048509: regulation of meristem development | 2.32E-03 |
| 58 | GO:2000037: regulation of stomatal complex patterning | 2.32E-03 |
| 59 | GO:0009955: adaxial/abaxial pattern specification | 2.32E-03 |
| 60 | GO:0006821: chloride transport | 2.74E-03 |
| 61 | GO:0010044: response to aluminum ion | 2.74E-03 |
| 62 | GO:0042255: ribosome assembly | 3.17E-03 |
| 63 | GO:0006353: DNA-templated transcription, termination | 3.17E-03 |
| 64 | GO:0048766: root hair initiation | 3.17E-03 |
| 65 | GO:0001522: pseudouridine synthesis | 3.17E-03 |
| 66 | GO:0052543: callose deposition in cell wall | 3.17E-03 |
| 67 | GO:0009642: response to light intensity | 3.17E-03 |
| 68 | GO:0000160: phosphorelay signal transduction system | 3.25E-03 |
| 69 | GO:0007389: pattern specification process | 3.63E-03 |
| 70 | GO:0006303: double-strand break repair via nonhomologous end joining | 3.63E-03 |
| 71 | GO:0010332: response to gamma radiation | 4.10E-03 |
| 72 | GO:0048829: root cap development | 5.11E-03 |
| 73 | GO:0009416: response to light stimulus | 5.37E-03 |
| 74 | GO:0015770: sucrose transport | 5.65E-03 |
| 75 | GO:0045037: protein import into chloroplast stroma | 6.20E-03 |
| 76 | GO:0008361: regulation of cell size | 6.20E-03 |
| 77 | GO:0009736: cytokinin-activated signaling pathway | 6.78E-03 |
| 78 | GO:0010588: cotyledon vascular tissue pattern formation | 6.78E-03 |
| 79 | GO:0010020: chloroplast fission | 7.37E-03 |
| 80 | GO:0006541: glutamine metabolic process | 7.37E-03 |
| 81 | GO:0080188: RNA-directed DNA methylation | 7.98E-03 |
| 82 | GO:0009901: anther dehiscence | 7.98E-03 |
| 83 | GO:0006071: glycerol metabolic process | 8.61E-03 |
| 84 | GO:0010073: meristem maintenance | 9.92E-03 |
| 85 | GO:0003333: amino acid transmembrane transport | 1.06E-02 |
| 86 | GO:0010431: seed maturation | 1.06E-02 |
| 87 | GO:0006306: DNA methylation | 1.06E-02 |
| 88 | GO:0010082: regulation of root meristem growth | 1.20E-02 |
| 89 | GO:0009831: plant-type cell wall modification involved in multidimensional cell growth | 1.20E-02 |
| 90 | GO:0071215: cellular response to abscisic acid stimulus | 1.20E-02 |
| 91 | GO:0009845: seed germination | 1.31E-02 |
| 92 | GO:0070417: cellular response to cold | 1.35E-02 |
| 93 | GO:0010501: RNA secondary structure unwinding | 1.43E-02 |
| 94 | GO:0010087: phloem or xylem histogenesis | 1.43E-02 |
| 95 | GO:0042631: cellular response to water deprivation | 1.43E-02 |
| 96 | GO:0009958: positive gravitropism | 1.50E-02 |
| 97 | GO:0009741: response to brassinosteroid | 1.50E-02 |
| 98 | GO:0007018: microtubule-based movement | 1.58E-02 |
| 99 | GO:0006814: sodium ion transport | 1.58E-02 |
| 100 | GO:0040008: regulation of growth | 1.60E-02 |
| 101 | GO:0009851: auxin biosynthetic process | 1.66E-02 |
| 102 | GO:0010183: pollen tube guidance | 1.66E-02 |
| 103 | GO:0010583: response to cyclopentenone | 1.83E-02 |
| 104 | GO:0031047: gene silencing by RNA | 1.83E-02 |
| 105 | GO:0009630: gravitropism | 1.83E-02 |
| 106 | GO:0009793: embryo development ending in seed dormancy | 1.85E-02 |
| 107 | GO:0010090: trichome morphogenesis | 1.91E-02 |
| 108 | GO:0010252: auxin homeostasis | 2.00E-02 |
| 109 | GO:0008380: RNA splicing | 2.00E-02 |
| 110 | GO:0009828: plant-type cell wall loosening | 2.00E-02 |
| 111 | GO:0010027: thylakoid membrane organization | 2.27E-02 |
| 112 | GO:0010029: regulation of seed germination | 2.36E-02 |
| 113 | GO:0009832: plant-type cell wall biogenesis | 2.84E-02 |
| 114 | GO:0048767: root hair elongation | 2.84E-02 |
| 115 | GO:0009407: toxin catabolic process | 2.94E-02 |
| 116 | GO:0048366: leaf development | 3.06E-02 |
| 117 | GO:0006865: amino acid transport | 3.14E-02 |
| 118 | GO:0030001: metal ion transport | 3.56E-02 |
| 119 | GO:0006839: mitochondrial transport | 3.56E-02 |
| 120 | GO:0006351: transcription, DNA-templated | 3.84E-02 |
| 121 | GO:0008283: cell proliferation | 3.88E-02 |
| 122 | GO:0009926: auxin polar transport | 3.88E-02 |
| 123 | GO:0045892: negative regulation of transcription, DNA-templated | 3.91E-02 |
| 124 | GO:0009636: response to toxic substance | 4.22E-02 |
| 125 | GO:0031347: regulation of defense response | 4.45E-02 |
| 126 | GO:0032259: methylation | 4.53E-02 |
| 127 | GO:0009664: plant-type cell wall organization | 4.56E-02 |
| 128 | GO:0042538: hyperosmotic salinity response | 4.56E-02 |
| 129 | GO:0006281: DNA repair | 4.73E-02 |
| 130 | GO:0006364: rRNA processing | 4.80E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0042834: peptidoglycan binding | 0.00E+00 |
| 2 | GO:0004519: endonuclease activity | 1.03E-05 |
| 3 | GO:0004071: aspartate-ammonia ligase activity | 1.77E-04 |
| 4 | GO:0004016: adenylate cyclase activity | 1.77E-04 |
| 5 | GO:1905201: gibberellin transmembrane transporter activity | 1.77E-04 |
| 6 | GO:0016422: mRNA (2'-O-methyladenosine-N6-)-methyltransferase activity | 1.77E-04 |
| 7 | GO:0003723: RNA binding | 1.80E-04 |
| 8 | GO:0000179: rRNA (adenine-N6,N6-)-dimethyltransferase activity | 4.01E-04 |
| 9 | GO:0009884: cytokinin receptor activity | 4.01E-04 |
| 10 | GO:0004066: asparagine synthase (glutamine-hydrolyzing) activity | 4.01E-04 |
| 11 | GO:0000095: S-adenosyl-L-methionine transmembrane transporter activity | 4.01E-04 |
| 12 | GO:0008805: carbon-monoxide oxygenase activity | 4.01E-04 |
| 13 | GO:0009982: pseudouridine synthase activity | 4.47E-04 |
| 14 | GO:0047334: diphosphate-fructose-6-phosphate 1-phosphotransferase activity | 6.55E-04 |
| 15 | GO:0016805: dipeptidase activity | 6.55E-04 |
| 16 | GO:0005034: osmosensor activity | 6.55E-04 |
| 17 | GO:0070180: large ribosomal subunit rRNA binding | 6.55E-04 |
| 18 | GO:0045548: phenylalanine ammonia-lyase activity | 6.55E-04 |
| 19 | GO:0008508: bile acid:sodium symporter activity | 9.34E-04 |
| 20 | GO:0003777: microtubule motor activity | 1.04E-03 |
| 21 | GO:0005253: anion channel activity | 1.24E-03 |
| 22 | GO:0016773: phosphotransferase activity, alcohol group as acceptor | 1.57E-03 |
| 23 | GO:0019843: rRNA binding | 1.89E-03 |
| 24 | GO:0005247: voltage-gated chloride channel activity | 1.94E-03 |
| 25 | GO:0008237: metallopeptidase activity | 2.12E-03 |
| 26 | GO:0019900: kinase binding | 2.32E-03 |
| 27 | GO:0003697: single-stranded DNA binding | 3.91E-03 |
| 28 | GO:0008889: glycerophosphodiester phosphodiesterase activity | 4.10E-03 |
| 29 | GO:0009672: auxin:proton symporter activity | 4.60E-03 |
| 30 | GO:0004673: protein histidine kinase activity | 5.11E-03 |
| 31 | GO:0008515: sucrose transmembrane transporter activity | 5.65E-03 |
| 32 | GO:0008559: xenobiotic-transporting ATPase activity | 5.65E-03 |
| 33 | GO:0010329: auxin efflux transmembrane transporter activity | 6.78E-03 |
| 34 | GO:0004022: alcohol dehydrogenase (NAD) activity | 6.78E-03 |
| 35 | GO:0000155: phosphorelay sensor kinase activity | 6.78E-03 |
| 36 | GO:0051119: sugar transmembrane transporter activity | 7.98E-03 |
| 37 | GO:0043424: protein histidine kinase binding | 9.92E-03 |
| 38 | GO:0004176: ATP-dependent peptidase activity | 1.06E-02 |
| 39 | GO:0030570: pectate lyase activity | 1.20E-02 |
| 40 | GO:0003727: single-stranded RNA binding | 1.27E-02 |
| 41 | GO:0003713: transcription coactivator activity | 1.50E-02 |
| 42 | GO:0005215: transporter activity | 1.82E-02 |
| 43 | GO:0016887: ATPase activity | 1.86E-02 |
| 44 | GO:0000156: phosphorelay response regulator activity | 1.91E-02 |
| 45 | GO:0042802: identical protein binding | 2.13E-02 |
| 46 | GO:0008375: acetylglucosaminyltransferase activity | 2.45E-02 |
| 47 | GO:0008168: methyltransferase activity | 2.50E-02 |
| 48 | GO:0004004: ATP-dependent RNA helicase activity | 2.55E-02 |
| 49 | GO:0005096: GTPase activator activity | 2.84E-02 |
| 50 | GO:0004222: metalloendopeptidase activity | 2.94E-02 |
| 51 | GO:0004364: glutathione transferase activity | 3.78E-02 |
| 52 | GO:0004871: signal transducer activity | 4.03E-02 |
| 53 | GO:0015293: symporter activity | 4.22E-02 |
| 54 | GO:0003735: structural constituent of ribosome | 4.29E-02 |
| 55 | GO:0003690: double-stranded DNA binding | 4.92E-02 |