Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT4G32520

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0015843: methylammonium transport0.00E+00
2GO:0046719: regulation by virus of viral protein levels in host cell0.00E+00
3GO:0009157: deoxyribonucleoside monophosphate biosynthetic process0.00E+00
4GO:1901698: response to nitrogen compound0.00E+00
5GO:0009606: tropism0.00E+00
6GO:0007638: mechanosensory behavior0.00E+00
7GO:1903224: regulation of endodermal cell differentiation0.00E+00
8GO:0097164: ammonium ion metabolic process0.00E+00
9GO:0070455: positive regulation of heme biosynthetic process0.00E+00
10GO:0045184: establishment of protein localization0.00E+00
11GO:0006003: fructose 2,6-bisphosphate metabolic process0.00E+00
12GO:0010480: microsporocyte differentiation0.00E+00
13GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway1.54E-07
14GO:0046620: regulation of organ growth2.46E-07
15GO:0009734: auxin-activated signaling pathway3.72E-06
16GO:0006468: protein phosphorylation4.25E-06
17GO:0009926: auxin polar transport5.90E-05
18GO:0009767: photosynthetic electron transport chain1.11E-04
19GO:0000160: phosphorelay signal transduction system2.36E-04
20GO:0048437: floral organ development3.88E-04
21GO:0034971: histone H3-R17 methylation4.13E-04
22GO:0035987: endodermal cell differentiation4.13E-04
23GO:0043609: regulation of carbon utilization4.13E-04
24GO:0006436: tryptophanyl-tRNA aminoacylation4.13E-04
25GO:0034757: negative regulation of iron ion transport4.13E-04
26GO:0034970: histone H3-R2 methylation4.13E-04
27GO:0042659: regulation of cell fate specification4.13E-04
28GO:0034972: histone H3-R26 methylation4.13E-04
29GO:0090558: plant epidermis development4.13E-04
30GO:1903866: palisade mesophyll development4.13E-04
31GO:0040008: regulation of growth5.92E-04
32GO:0006002: fructose 6-phosphate metabolic process5.92E-04
33GO:0007389: pattern specification process5.92E-04
34GO:0009733: response to auxin6.73E-04
35GO:0006783: heme biosynthetic process7.09E-04
36GO:0000373: Group II intron splicing7.09E-04
37GO:0009736: cytokinin-activated signaling pathway7.66E-04
38GO:0032502: developmental process7.72E-04
39GO:0007166: cell surface receptor signaling pathway8.15E-04
40GO:0009638: phototropism8.37E-04
41GO:1904143: positive regulation of carotenoid biosynthetic process8.93E-04
42GO:0009786: regulation of asymmetric cell division8.93E-04
43GO:0006529: asparagine biosynthetic process8.93E-04
44GO:0019919: peptidyl-arginine methylation, to asymmetrical-dimethyl arginine8.93E-04
45GO:2000123: positive regulation of stomatal complex development8.93E-04
46GO:0010254: nectary development8.93E-04
47GO:1902884: positive regulation of response to oxidative stress8.93E-04
48GO:1902326: positive regulation of chlorophyll biosynthetic process8.93E-04
49GO:0010569: regulation of double-strand break repair via homologous recombination8.93E-04
50GO:0070981: L-asparagine biosynthetic process8.93E-04
51GO:0010434: bract formation8.93E-04
52GO:0010271: regulation of chlorophyll catabolic process8.93E-04
53GO:0071497: cellular response to freezing8.93E-04
54GO:0048439: flower morphogenesis8.93E-04
55GO:0010252: auxin homeostasis9.04E-04
56GO:0009416: response to light stimulus9.75E-04
57GO:0048229: gametophyte development1.12E-03
58GO:0010582: floral meristem determinacy1.28E-03
59GO:0010411: xyloglucan metabolic process1.38E-03
60GO:0009742: brassinosteroid mediated signaling pathway1.42E-03
61GO:0001578: microtubule bundle formation1.45E-03
62GO:0010075: regulation of meristem growth1.45E-03
63GO:0009954: proximal/distal pattern formation1.45E-03
64GO:0051127: positive regulation of actin nucleation1.45E-03
65GO:0090708: specification of plant organ axis polarity1.45E-03
66GO:0080117: secondary growth1.45E-03
67GO:0006000: fructose metabolic process1.45E-03
68GO:0090391: granum assembly1.45E-03
69GO:0071705: nitrogen compound transport1.45E-03
70GO:0009934: regulation of meristem structural organization1.64E-03
71GO:1902476: chloride transmembrane transport2.10E-03
72GO:0051513: regulation of monopolar cell growth2.10E-03
73GO:0007231: osmosensory signaling pathway2.10E-03
74GO:0051639: actin filament network formation2.10E-03
75GO:0010239: chloroplast mRNA processing2.10E-03
76GO:0044211: CTP salvage2.10E-03
77GO:0009800: cinnamic acid biosynthetic process2.10E-03
78GO:0019048: modulation by virus of host morphology or physiology2.10E-03
79GO:0033014: tetrapyrrole biosynthetic process2.10E-03
80GO:0015696: ammonium transport2.10E-03
81GO:0046739: transport of virus in multicellular host2.10E-03
82GO:2000904: regulation of starch metabolic process2.10E-03
83GO:0031048: chromatin silencing by small RNA2.10E-03
84GO:0043572: plastid fission2.10E-03
85GO:0009944: polarity specification of adaxial/abaxial axis2.27E-03
86GO:0006306: DNA methylation2.75E-03
87GO:0016998: cell wall macromolecule catabolic process2.75E-03
88GO:0009165: nucleotide biosynthetic process2.82E-03
89GO:1901141: regulation of lignin biosynthetic process2.82E-03
90GO:0051764: actin crosslink formation2.82E-03
91GO:0051322: anaphase2.82E-03
92GO:0071249: cellular response to nitrate2.82E-03
93GO:0072488: ammonium transmembrane transport2.82E-03
94GO:0030104: water homeostasis2.82E-03
95GO:0033500: carbohydrate homeostasis2.82E-03
96GO:2000038: regulation of stomatal complex development2.82E-03
97GO:0051567: histone H3-K9 methylation2.82E-03
98GO:0044205: 'de novo' UMP biosynthetic process2.82E-03
99GO:0044206: UMP salvage2.82E-03
100GO:0042546: cell wall biogenesis3.10E-03
101GO:0010082: regulation of root meristem growth3.29E-03
102GO:1902183: regulation of shoot apical meristem development3.61E-03
103GO:0016123: xanthophyll biosynthetic process3.61E-03
104GO:0010158: abaxial cell fate specification3.61E-03
105GO:0048578: positive regulation of long-day photoperiodism, flowering3.61E-03
106GO:0010375: stomatal complex patterning3.61E-03
107GO:0048497: maintenance of floral organ identity3.61E-03
108GO:0048653: anther development4.19E-03
109GO:0010405: arabinogalactan protein metabolic process4.47E-03
110GO:0010304: PSII associated light-harvesting complex II catabolic process4.47E-03
111GO:0009959: negative gravitropism4.47E-03
112GO:0009913: epidermal cell differentiation4.47E-03
113GO:0006655: phosphatidylglycerol biosynthetic process4.47E-03
114GO:0006139: nucleobase-containing compound metabolic process4.47E-03
115GO:0042793: transcription from plastid promoter4.47E-03
116GO:0048831: regulation of shoot system development4.47E-03
117GO:0010315: auxin efflux4.47E-03
118GO:0006559: L-phenylalanine catabolic process4.47E-03
119GO:0006206: pyrimidine nucleobase metabolic process4.47E-03
120GO:0018258: protein O-linked glycosylation via hydroxyproline4.47E-03
121GO:0016458: gene silencing4.47E-03
122GO:0006342: chromatin silencing4.52E-03
123GO:0009646: response to absence of light4.85E-03
124GO:0000079: regulation of cyclin-dependent protein serine/threonine kinase activity5.38E-03
125GO:2000067: regulation of root morphogenesis5.38E-03
126GO:0009955: adaxial/abaxial pattern specification5.38E-03
127GO:0048509: regulation of meristem development5.38E-03
128GO:0030488: tRNA methylation5.38E-03
129GO:1901259: chloroplast rRNA processing5.38E-03
130GO:0009658: chloroplast organization5.86E-03
131GO:0009864: induced systemic resistance, jasmonic acid mediated signaling pathway6.36E-03
132GO:0010161: red light signaling pathway6.36E-03
133GO:0009610: response to symbiotic fungus6.36E-03
134GO:0006955: immune response6.36E-03
135GO:0006821: chloride transport6.36E-03
136GO:0010050: vegetative phase change6.36E-03
137GO:0055075: potassium ion homeostasis7.40E-03
138GO:0001522: pseudouridine synthesis7.40E-03
139GO:0009850: auxin metabolic process7.40E-03
140GO:0030162: regulation of proteolysis7.40E-03
141GO:0042255: ribosome assembly7.40E-03
142GO:0048766: root hair initiation7.40E-03
143GO:0051607: defense response to virus7.63E-03
144GO:0010027: thylakoid membrane organization8.09E-03
145GO:0010099: regulation of photomorphogenesis8.49E-03
146GO:0009827: plant-type cell wall modification8.49E-03
147GO:0010052: guard cell differentiation8.49E-03
148GO:0010497: plasmodesmata-mediated intercellular transport8.49E-03
149GO:0010100: negative regulation of photomorphogenesis8.49E-03
150GO:0006526: arginine biosynthetic process8.49E-03
151GO:0010029: regulation of seed germination8.56E-03
152GO:0015995: chlorophyll biosynthetic process9.54E-03
153GO:0009051: pentose-phosphate shunt, oxidative branch9.65E-03
154GO:2000024: regulation of leaf development9.65E-03
155GO:0042761: very long-chain fatty acid biosynthetic process1.09E-02
156GO:2000280: regulation of root development1.09E-02
157GO:0006349: regulation of gene expression by genetic imprinting1.09E-02
158GO:0031425: chloroplast RNA processing1.09E-02
159GO:0030422: production of siRNA involved in RNA interference1.21E-02
160GO:0048829: root cap development1.21E-02
161GO:0009641: shade avoidance1.21E-02
162GO:0010048: vernalization response1.21E-02
163GO:0009299: mRNA transcription1.21E-02
164GO:0016310: phosphorylation1.26E-02
165GO:0071555: cell wall organization1.32E-02
166GO:0010015: root morphogenesis1.34E-02
167GO:0006816: calcium ion transport1.34E-02
168GO:0009773: photosynthetic electron transport in photosystem I1.34E-02
169GO:0009451: RNA modification1.40E-02
170GO:0015706: nitrate transport1.48E-02
171GO:0016024: CDP-diacylglycerol biosynthetic process1.48E-02
172GO:0048364: root development1.56E-02
173GO:0030036: actin cytoskeleton organization1.62E-02
174GO:0009725: response to hormone1.62E-02
175GO:0010628: positive regulation of gene expression1.62E-02
176GO:0009785: blue light signaling pathway1.62E-02
177GO:0006006: glucose metabolic process1.62E-02
178GO:0008380: RNA splicing1.70E-02
179GO:0006541: glutamine metabolic process1.76E-02
180GO:0010207: photosystem II assembly1.76E-02
181GO:0010020: chloroplast fission1.76E-02
182GO:0010167: response to nitrate1.91E-02
183GO:0090351: seedling development1.91E-02
184GO:0070588: calcium ion transmembrane transport1.91E-02
185GO:0016567: protein ubiquitination2.05E-02
186GO:0006071: glycerol metabolic process2.06E-02
187GO:0006833: water transport2.06E-02
188GO:0005992: trehalose biosynthetic process2.22E-02
189GO:0051017: actin filament bundle assembly2.22E-02
190GO:0010187: negative regulation of seed germination2.22E-02
191GO:0006825: copper ion transport2.38E-02
192GO:0051302: regulation of cell division2.38E-02
193GO:0006418: tRNA aminoacylation for protein translation2.38E-02
194GO:0009909: regulation of flower development2.60E-02
195GO:0031348: negative regulation of defense response2.72E-02
196GO:0048316: seed development2.86E-02
197GO:0010227: floral organ abscission2.89E-02
198GO:0071215: cellular response to abscisic acid stimulus2.89E-02
199GO:0009686: gibberellin biosynthetic process2.89E-02
200GO:0009735: response to cytokinin3.01E-02
201GO:0006284: base-excision repair3.07E-02
202GO:0009740: gibberellic acid mediated signaling pathway3.14E-02
203GO:0070417: cellular response to cold3.25E-02
204GO:0046777: protein autophosphorylation3.36E-02
205GO:0010087: phloem or xylem histogenesis3.44E-02
206GO:0000226: microtubule cytoskeleton organization3.44E-02
207GO:0009741: response to brassinosteroid3.63E-02
208GO:0009958: positive gravitropism3.63E-02
209GO:0009960: endosperm development3.63E-02
210GO:0008654: phospholipid biosynthetic process4.01E-02
211GO:0009791: post-embryonic development4.01E-02
212GO:0048825: cotyledon development4.01E-02
213GO:0030154: cell differentiation4.17E-02
214GO:0071554: cell wall organization or biogenesis4.21E-02
215GO:0009630: gravitropism4.41E-02
216GO:0010583: response to cyclopentenone4.41E-02
217GO:0031047: gene silencing by RNA4.41E-02
218GO:0071281: cellular response to iron ion4.62E-02
RankGO TermAdjusted P value
1GO:0019136: deoxynucleoside kinase activity0.00E+00
2GO:0004331: fructose-2,6-bisphosphate 2-phosphatase activity0.00E+00
3GO:0003873: 6-phosphofructo-2-kinase activity0.00E+00
4GO:0004056: argininosuccinate lyase activity0.00E+00
5GO:0004674: protein serine/threonine kinase activity3.30E-06
6GO:0004672: protein kinase activity3.50E-05
7GO:0016773: phosphotransferase activity, alcohol group as acceptor1.56E-04
8GO:0016301: kinase activity1.76E-04
9GO:0005524: ATP binding3.55E-04
10GO:0003727: single-stranded RNA binding4.00E-04
11GO:0042834: peptidoglycan binding4.13E-04
12GO:0004088: carbamoyl-phosphate synthase (glutamine-hydrolyzing) activity4.13E-04
13GO:0004008: copper-exporting ATPase activity4.13E-04
14GO:0004071: aspartate-ammonia ligase activity4.13E-04
15GO:0052906: tRNA (guanine(37)-N(1))-methyltransferase activity4.13E-04
16GO:0033946: xyloglucan-specific endo-beta-1,4-glucanase activity4.13E-04
17GO:0004830: tryptophan-tRNA ligase activity4.13E-04
18GO:0010313: phytochrome binding4.13E-04
19GO:0004675: transmembrane receptor protein serine/threonine kinase activity5.68E-04
20GO:0016762: xyloglucan:xyloglucosyl transferase activity7.10E-04
21GO:0009672: auxin:proton symporter activity8.37E-04
22GO:0000156: phosphorelay response regulator activity8.37E-04
23GO:0035242: protein-arginine omega-N asymmetric methyltransferase activity8.93E-04
24GO:0043425: bHLH transcription factor binding8.93E-04
25GO:0000095: S-adenosyl-L-methionine transmembrane transporter activity8.93E-04
26GO:0015929: hexosaminidase activity8.93E-04
27GO:0004563: beta-N-acetylhexosaminidase activity8.93E-04
28GO:0016277: [myelin basic protein]-arginine N-methyltransferase activity8.93E-04
29GO:0009884: cytokinin receptor activity8.93E-04
30GO:0035241: protein-arginine omega-N monomethyltransferase activity8.93E-04
31GO:0004066: asparagine synthase (glutamine-hydrolyzing) activity8.93E-04
32GO:0005089: Rho guanyl-nucleotide exchange factor activity1.12E-03
33GO:0005515: protein binding1.19E-03
34GO:0016798: hydrolase activity, acting on glycosyl bonds1.38E-03
35GO:0005034: osmosensor activity1.45E-03
36GO:0008469: histone-arginine N-methyltransferase activity1.45E-03
37GO:0070330: aromatase activity1.45E-03
38GO:0017150: tRNA dihydrouridine synthase activity1.45E-03
39GO:0045548: phenylalanine ammonia-lyase activity1.45E-03
40GO:0032549: ribonucleoside binding1.45E-03
41GO:0010329: auxin efflux transmembrane transporter activity1.45E-03
42GO:0001872: (1->3)-beta-D-glucan binding2.10E-03
43GO:0035197: siRNA binding2.10E-03
44GO:0033612: receptor serine/threonine kinase binding2.75E-03
45GO:0004845: uracil phosphoribosyltransferase activity2.82E-03
46GO:0004345: glucose-6-phosphate dehydrogenase activity2.82E-03
47GO:0019199: transmembrane receptor protein kinase activity2.82E-03
48GO:0005253: anion channel activity2.82E-03
49GO:0043495: protein anchor2.82E-03
50GO:0004871: signal transducer activity3.02E-03
51GO:0008725: DNA-3-methyladenine glycosylase activity3.61E-03
52GO:0018685: alkane 1-monooxygenase activity3.61E-03
53GO:0008519: ammonium transmembrane transporter activity4.47E-03
54GO:0005247: voltage-gated chloride channel activity4.47E-03
55GO:2001070: starch binding4.47E-03
56GO:0004605: phosphatidate cytidylyltransferase activity4.47E-03
57GO:1990714: hydroxyproline O-galactosyltransferase activity4.47E-03
58GO:0019901: protein kinase binding5.21E-03
59GO:0019900: kinase binding5.38E-03
60GO:0008195: phosphatidate phosphatase activity5.38E-03
61GO:0045156: electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity5.38E-03
62GO:0004849: uridine kinase activity5.38E-03
63GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds5.74E-03
64GO:0003872: 6-phosphofructokinase activity6.36E-03
65GO:0005375: copper ion transmembrane transporter activity8.49E-03
66GO:0008173: RNA methyltransferase activity8.49E-03
67GO:0008353: RNA polymerase II carboxy-terminal domain kinase activity8.49E-03
68GO:0008889: glycerophosphodiester phosphodiesterase activity9.65E-03
69GO:0004713: protein tyrosine kinase activity1.21E-02
70GO:0004673: protein histidine kinase activity1.21E-02
71GO:0004805: trehalose-phosphatase activity1.21E-02
72GO:0001054: RNA polymerase I activity1.34E-02
73GO:0004521: endoribonuclease activity1.48E-02
74GO:0031072: heat shock protein binding1.62E-02
75GO:0000155: phosphorelay sensor kinase activity1.62E-02
76GO:0005262: calcium channel activity1.62E-02
77GO:0009982: pseudouridine synthase activity1.62E-02
78GO:0004022: alcohol dehydrogenase (NAD) activity1.62E-02
79GO:0015662: ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism1.62E-02
80GO:0042973: glucan endo-1,3-beta-D-glucosidase activity1.76E-02
81GO:0042802: identical protein binding1.85E-02
82GO:0043621: protein self-association1.88E-02
83GO:0043424: protein histidine kinase binding2.38E-02
84GO:0005345: purine nucleobase transmembrane transporter activity2.38E-02
85GO:0035251: UDP-glucosyltransferase activity2.55E-02
86GO:0004176: ATP-dependent peptidase activity2.55E-02
87GO:0031625: ubiquitin protein ligase binding2.60E-02
88GO:0050660: flavin adenine dinucleotide binding2.84E-02
89GO:0004650: polygalacturonase activity3.05E-02
90GO:0008514: organic anion transmembrane transporter activity3.07E-02
91GO:0004812: aminoacyl-tRNA ligase activity3.25E-02
92GO:0018024: histone-lysine N-methyltransferase activity3.25E-02
93GO:0003713: transcription coactivator activity3.63E-02
94GO:0001085: RNA polymerase II transcription factor binding3.63E-02
95GO:0010181: FMN binding3.82E-02
96GO:0042803: protein homodimerization activity4.10E-02
97GO:0019843: rRNA binding4.17E-02
98GO:0016829: lyase activity4.51E-02
99GO:0051015: actin filament binding4.62E-02
100GO:0004252: serine-type endopeptidase activity4.62E-02
101GO:0016759: cellulose synthase activity4.83E-02
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Gene type



Gene DE type