Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT4G31590

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:1903224: regulation of endodermal cell differentiation0.00E+00
2GO:0007638: mechanosensory behavior0.00E+00
3GO:0006003: fructose 2,6-bisphosphate metabolic process0.00E+00
4GO:0010480: microsporocyte differentiation0.00E+00
5GO:0097164: ammonium ion metabolic process0.00E+00
6GO:0034971: histone H3-R17 methylation0.00E+00
7GO:0045184: establishment of protein localization0.00E+00
8GO:0015843: methylammonium transport0.00E+00
9GO:0031222: arabinan catabolic process0.00E+00
10GO:0070979: protein K11-linked ubiquitination0.00E+00
11GO:0061157: mRNA destabilization0.00E+00
12GO:0034970: histone H3-R2 methylation0.00E+00
13GO:0046719: regulation by virus of viral protein levels in host cell0.00E+00
14GO:0009606: tropism0.00E+00
15GO:0034972: histone H3-R26 methylation0.00E+00
16GO:1901698: response to nitrogen compound0.00E+00
17GO:0046620: regulation of organ growth9.83E-09
18GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway2.18E-07
19GO:0009733: response to auxin1.28E-06
20GO:0009926: auxin polar transport1.64E-06
21GO:0009734: auxin-activated signaling pathway6.47E-06
22GO:0019919: peptidyl-arginine methylation, to asymmetrical-dimethyl arginine1.55E-05
23GO:2000038: regulation of stomatal complex development1.86E-04
24GO:0032876: negative regulation of DNA endoreduplication2.82E-04
25GO:0030154: cell differentiation3.51E-04
26GO:0006468: protein phosphorylation3.62E-04
27GO:0040008: regulation of growth3.67E-04
28GO:0000160: phosphorelay signal transduction system5.77E-04
29GO:0009740: gibberellic acid mediated signaling pathway5.92E-04
30GO:0090558: plant epidermis development5.98E-04
31GO:0033206: meiotic cytokinesis5.98E-04
32GO:1903866: palisade mesophyll development5.98E-04
33GO:0035987: endodermal cell differentiation5.98E-04
34GO:0043609: regulation of carbon utilization5.98E-04
35GO:0006436: tryptophanyl-tRNA aminoacylation5.98E-04
36GO:0000066: mitochondrial ornithine transport5.98E-04
37GO:0051013: microtubule severing5.98E-04
38GO:0034757: negative regulation of iron ion transport5.98E-04
39GO:0042659: regulation of cell fate specification5.98E-04
40GO:0048437: floral organ development6.70E-04
41GO:0007389: pattern specification process1.01E-03
42GO:0009958: positive gravitropism1.09E-03
43GO:0010271: regulation of chlorophyll catabolic process1.29E-03
44GO:0010569: regulation of double-strand break repair via homologous recombination1.29E-03
45GO:0000256: allantoin catabolic process1.29E-03
46GO:0071497: cellular response to freezing1.29E-03
47GO:0010434: bract formation1.29E-03
48GO:1900033: negative regulation of trichome patterning1.29E-03
49GO:0001736: establishment of planar polarity1.29E-03
50GO:0009786: regulation of asymmetric cell division1.29E-03
51GO:0048439: flower morphogenesis1.29E-03
52GO:0018022: peptidyl-lysine methylation1.29E-03
53GO:0006529: asparagine biosynthetic process1.29E-03
54GO:2000123: positive regulation of stomatal complex development1.29E-03
55GO:1902884: positive regulation of response to oxidative stress1.29E-03
56GO:0010254: nectary development1.29E-03
57GO:0070981: L-asparagine biosynthetic process1.29E-03
58GO:0009723: response to ethylene1.31E-03
59GO:0030422: production of siRNA involved in RNA interference1.67E-03
60GO:0048829: root cap development1.67E-03
61GO:0009736: cytokinin-activated signaling pathway1.79E-03
62GO:0010252: auxin homeostasis1.83E-03
63GO:0048229: gametophyte development1.94E-03
64GO:0009909: regulation of flower development2.09E-03
65GO:0009739: response to gibberellin2.11E-03
66GO:0031145: anaphase-promoting complex-dependent catabolic process2.12E-03
67GO:0071705: nitrogen compound transport2.12E-03
68GO:0009954: proximal/distal pattern formation2.12E-03
69GO:0090708: specification of plant organ axis polarity2.12E-03
70GO:0080117: secondary growth2.12E-03
71GO:0090391: granum assembly2.12E-03
72GO:0006000: fructose metabolic process2.12E-03
73GO:0010136: ureide catabolic process2.12E-03
74GO:0010589: leaf proximal/distal pattern formation2.12E-03
75GO:0010029: regulation of seed germination2.46E-03
76GO:0010075: regulation of meristem growth2.52E-03
77GO:0009767: photosynthetic electron transport chain2.52E-03
78GO:0009934: regulation of meristem structural organization2.85E-03
79GO:0046739: transport of virus in multicellular host3.07E-03
80GO:2000904: regulation of starch metabolic process3.07E-03
81GO:0006145: purine nucleobase catabolic process3.07E-03
82GO:0043572: plastid fission3.07E-03
83GO:0031048: chromatin silencing by small RNA3.07E-03
84GO:1902476: chloride transmembrane transport3.07E-03
85GO:0051513: regulation of monopolar cell growth3.07E-03
86GO:0007231: osmosensory signaling pathway3.07E-03
87GO:0030071: regulation of mitotic metaphase/anaphase transition3.07E-03
88GO:0051639: actin filament network formation3.07E-03
89GO:0009800: cinnamic acid biosynthetic process3.07E-03
90GO:0009650: UV protection3.07E-03
91GO:0044211: CTP salvage3.07E-03
92GO:0019048: modulation by virus of host morphology or physiology3.07E-03
93GO:0015696: ammonium transport3.07E-03
94GO:0009416: response to light stimulus3.37E-03
95GO:0009742: brassinosteroid mediated signaling pathway3.37E-03
96GO:0010187: negative regulation of seed germination3.96E-03
97GO:0005992: trehalose biosynthetic process3.96E-03
98GO:0009944: polarity specification of adaxial/abaxial axis3.96E-03
99GO:0044205: 'de novo' UMP biosynthetic process4.15E-03
100GO:0051567: histone H3-K9 methylation4.15E-03
101GO:0044206: UMP salvage4.15E-03
102GO:1901141: regulation of lignin biosynthetic process4.15E-03
103GO:0048629: trichome patterning4.15E-03
104GO:0051764: actin crosslink formation4.15E-03
105GO:0071249: cellular response to nitrate4.15E-03
106GO:0030104: water homeostasis4.15E-03
107GO:0033500: carbohydrate homeostasis4.15E-03
108GO:0035279: mRNA cleavage involved in gene silencing by miRNA4.15E-03
109GO:0072488: ammonium transmembrane transport4.15E-03
110GO:0022622: root system development4.15E-03
111GO:0006306: DNA methylation4.82E-03
112GO:0071493: cellular response to UV-B5.32E-03
113GO:0006544: glycine metabolic process5.32E-03
114GO:1902183: regulation of shoot apical meristem development5.32E-03
115GO:0016123: xanthophyll biosynthetic process5.32E-03
116GO:0010438: cellular response to sulfur starvation5.32E-03
117GO:0030308: negative regulation of cell growth5.32E-03
118GO:0010375: stomatal complex patterning5.32E-03
119GO:0009616: virus induced gene silencing5.32E-03
120GO:0006357: regulation of transcription from RNA polymerase II promoter5.69E-03
121GO:0009686: gibberellin biosynthetic process5.77E-03
122GO:0010082: regulation of root meristem growth5.77E-03
123GO:0042176: regulation of protein catabolic process6.60E-03
124GO:0010315: auxin efflux6.60E-03
125GO:0016458: gene silencing6.60E-03
126GO:0006559: L-phenylalanine catabolic process6.60E-03
127GO:0006206: pyrimidine nucleobase metabolic process6.60E-03
128GO:0018258: protein O-linked glycosylation via hydroxyproline6.60E-03
129GO:0006563: L-serine metabolic process6.60E-03
130GO:0010405: arabinogalactan protein metabolic process6.60E-03
131GO:0009959: negative gravitropism6.60E-03
132GO:0006655: phosphatidylglycerol biosynthetic process6.60E-03
133GO:0048831: regulation of shoot system development6.60E-03
134GO:0010087: phloem or xylem histogenesis7.36E-03
135GO:0048653: anther development7.36E-03
136GO:0010305: leaf vascular tissue pattern formation7.95E-03
137GO:0006342: chromatin silencing7.95E-03
138GO:0010067: procambium histogenesis7.98E-03
139GO:0048509: regulation of meristem development7.98E-03
140GO:0030488: tRNA methylation7.98E-03
141GO:2000033: regulation of seed dormancy process7.98E-03
142GO:2000037: regulation of stomatal complex patterning7.98E-03
143GO:2000067: regulation of root morphogenesis7.98E-03
144GO:0071470: cellular response to osmotic stress7.98E-03
145GO:0006351: transcription, DNA-templated8.93E-03
146GO:0035196: production of miRNAs involved in gene silencing by miRNA9.45E-03
147GO:0010103: stomatal complex morphogenesis9.45E-03
148GO:0032880: regulation of protein localization9.45E-03
149GO:0009864: induced systemic resistance, jasmonic acid mediated signaling pathway9.45E-03
150GO:0010161: red light signaling pathway9.45E-03
151GO:0009610: response to symbiotic fungus9.45E-03
152GO:0006955: immune response9.45E-03
153GO:0006821: chloride transport9.45E-03
154GO:0032502: developmental process1.05E-02
155GO:0009751: response to salicylic acid1.06E-02
156GO:0009787: regulation of abscisic acid-activated signaling pathway1.10E-02
157GO:0032875: regulation of DNA endoreduplication1.10E-02
158GO:0030162: regulation of proteolysis1.10E-02
159GO:0042255: ribosome assembly1.10E-02
160GO:0048766: root hair initiation1.10E-02
161GO:0055075: potassium ion homeostasis1.10E-02
162GO:0009938: negative regulation of gibberellic acid mediated signaling pathway1.10E-02
163GO:0010439: regulation of glucosinolate biosynthetic process1.10E-02
164GO:0001522: pseudouridine synthesis1.10E-02
165GO:0048364: root development1.17E-02
166GO:0010100: negative regulation of photomorphogenesis1.27E-02
167GO:0001510: RNA methylation1.27E-02
168GO:0006526: arginine biosynthetic process1.27E-02
169GO:0010497: plasmodesmata-mediated intercellular transport1.27E-02
170GO:0010093: specification of floral organ identity1.27E-02
171GO:0010099: regulation of photomorphogenesis1.27E-02
172GO:0006002: fructose 6-phosphate metabolic process1.27E-02
173GO:0009827: plant-type cell wall modification1.27E-02
174GO:0051607: defense response to virus1.35E-02
175GO:0010027: thylakoid membrane organization1.43E-02
176GO:0006783: heme biosynthetic process1.44E-02
177GO:0000373: Group II intron splicing1.44E-02
178GO:0048507: meristem development1.44E-02
179GO:0000902: cell morphogenesis1.44E-02
180GO:0009051: pentose-phosphate shunt, oxidative branch1.44E-02
181GO:2000024: regulation of leaf development1.44E-02
182GO:0031425: chloroplast RNA processing1.62E-02
183GO:0009638: phototropism1.62E-02
184GO:0042761: very long-chain fatty acid biosynthetic process1.62E-02
185GO:2000280: regulation of root development1.62E-02
186GO:0006349: regulation of gene expression by genetic imprinting1.62E-02
187GO:0035999: tetrahydrofolate interconversion1.62E-02
188GO:0006355: regulation of transcription, DNA-templated1.80E-02
189GO:0006995: cellular response to nitrogen starvation1.81E-02
190GO:0009641: shade avoidance1.81E-02
191GO:0006949: syncytium formation1.81E-02
192GO:0010048: vernalization response1.81E-02
193GO:0009299: mRNA transcription1.81E-02
194GO:0048481: plant ovule development1.87E-02
195GO:0080167: response to karrikin1.91E-02
196GO:0010311: lateral root formation1.97E-02
197GO:0009773: photosynthetic electron transport in photosystem I2.01E-02
198GO:0009682: induced systemic resistance2.01E-02
199GO:0048765: root hair cell differentiation2.01E-02
200GO:0010015: root morphogenesis2.01E-02
201GO:0006816: calcium ion transport2.01E-02
202GO:0016024: CDP-diacylglycerol biosynthetic process2.21E-02
203GO:0010582: floral meristem determinacy2.21E-02
204GO:0008361: regulation of cell size2.21E-02
205GO:0015706: nitrate transport2.21E-02
206GO:0010628: positive regulation of gene expression2.42E-02
207GO:0006006: glucose metabolic process2.42E-02
208GO:0009785: blue light signaling pathway2.42E-02
209GO:0009725: response to hormone2.42E-02
210GO:2000012: regulation of auxin polar transport2.42E-02
211GO:0010020: chloroplast fission2.64E-02
212GO:0010223: secondary shoot formation2.64E-02
213GO:0010207: photosystem II assembly2.64E-02
214GO:0010143: cutin biosynthetic process2.64E-02
215GO:0006541: glutamine metabolic process2.64E-02
216GO:0006839: mitochondrial transport2.71E-02
217GO:0010167: response to nitrate2.87E-02
218GO:0090351: seedling development2.87E-02
219GO:0070588: calcium ion transmembrane transport2.87E-02
220GO:0009825: multidimensional cell growth2.87E-02
221GO:0010114: response to red light3.07E-02
222GO:0009640: photomorphogenesis3.07E-02
223GO:0006071: glycerol metabolic process3.10E-02
224GO:0006833: water transport3.10E-02
225GO:0007166: cell surface receptor signaling pathway3.29E-02
226GO:0009863: salicylic acid mediated signaling pathway3.33E-02
227GO:0051017: actin filament bundle assembly3.33E-02
228GO:2000377: regulation of reactive oxygen species metabolic process3.33E-02
229GO:0080147: root hair cell development3.33E-02
230GO:0016567: protein ubiquitination3.43E-02
231GO:0043622: cortical microtubule organization3.58E-02
232GO:0006825: copper ion transport3.58E-02
233GO:0051302: regulation of cell division3.58E-02
234GO:0006418: tRNA aminoacylation for protein translation3.58E-02
235GO:0005975: carbohydrate metabolic process3.62E-02
236GO:0009753: response to jasmonic acid3.76E-02
237GO:0003333: amino acid transmembrane transport3.82E-02
238GO:0016998: cell wall macromolecule catabolic process3.82E-02
239GO:0042538: hyperosmotic salinity response3.85E-02
240GO:0031348: negative regulation of defense response4.08E-02
241GO:0071215: cellular response to abscisic acid stimulus4.34E-02
242GO:0001944: vasculature development4.34E-02
243GO:0009625: response to insect4.34E-02
244GO:0010227: floral organ abscission4.34E-02
245GO:0009831: plant-type cell wall modification involved in multidimensional cell growth4.34E-02
246GO:0009826: unidimensional cell growth4.55E-02
247GO:0006284: base-excision repair4.60E-02
248GO:0010089: xylem development4.60E-02
249GO:0010091: trichome branching4.60E-02
250GO:0070417: cellular response to cold4.87E-02
251GO:0008284: positive regulation of cell proliferation4.87E-02
RankGO TermAdjusted P value
1GO:0004038: allantoinase activity0.00E+00
2GO:0004331: fructose-2,6-bisphosphate 2-phosphatase activity0.00E+00
3GO:0003873: 6-phosphofructo-2-kinase activity0.00E+00
4GO:0016277: [myelin basic protein]-arginine N-methyltransferase activity1.55E-05
5GO:0035242: protein-arginine omega-N asymmetric methyltransferase activity1.55E-05
6GO:0035241: protein-arginine omega-N monomethyltransferase activity1.55E-05
7GO:0008469: histone-arginine N-methyltransferase activity5.15E-05
8GO:0003727: single-stranded RNA binding8.30E-05
9GO:0004674: protein serine/threonine kinase activity1.01E-04
10GO:0052906: tRNA (guanine(37)-N(1))-methyltransferase activity5.98E-04
11GO:0005290: L-histidine transmembrane transporter activity5.98E-04
12GO:0004008: copper-exporting ATPase activity5.98E-04
13GO:0004071: aspartate-ammonia ligase activity5.98E-04
14GO:0004830: tryptophan-tRNA ligase activity5.98E-04
15GO:0010313: phytochrome binding5.98E-04
16GO:0004016: adenylate cyclase activity5.98E-04
17GO:0008568: microtubule-severing ATPase activity5.98E-04
18GO:0042834: peptidoglycan binding5.98E-04
19GO:0004088: carbamoyl-phosphate synthase (glutamine-hydrolyzing) activity5.98E-04
20GO:0004672: protein kinase activity8.75E-04
21GO:0008173: RNA methyltransferase activity1.01E-03
22GO:0008805: carbon-monoxide oxygenase activity1.29E-03
23GO:0000064: L-ornithine transmembrane transporter activity1.29E-03
24GO:0015929: hexosaminidase activity1.29E-03
25GO:0004563: beta-N-acetylhexosaminidase activity1.29E-03
26GO:0009884: cytokinin receptor activity1.29E-03
27GO:0004066: asparagine synthase (glutamine-hydrolyzing) activity1.29E-03
28GO:0043425: bHLH transcription factor binding1.29E-03
29GO:0000095: S-adenosyl-L-methionine transmembrane transporter activity1.29E-03
30GO:0009672: auxin:proton symporter activity1.43E-03
31GO:0004805: trehalose-phosphatase activity1.67E-03
32GO:0000156: phosphorelay response regulator activity1.68E-03
33GO:0005089: Rho guanyl-nucleotide exchange factor activity1.94E-03
34GO:0045548: phenylalanine ammonia-lyase activity2.12E-03
35GO:0047334: diphosphate-fructose-6-phosphate 1-phosphotransferase activity2.12E-03
36GO:0016805: dipeptidase activity2.12E-03
37GO:0005034: osmosensor activity2.12E-03
38GO:0016707: gibberellin 3-beta-dioxygenase activity2.12E-03
39GO:0004180: carboxypeptidase activity2.12E-03
40GO:0070330: aromatase activity2.12E-03
41GO:0052722: fatty acid in-chain hydroxylase activity2.12E-03
42GO:0017150: tRNA dihydrouridine synthase activity2.12E-03
43GO:0032549: ribonucleoside binding2.12E-03
44GO:0001135: transcription factor activity, RNA polymerase II transcription factor recruiting2.15E-03
45GO:0010329: auxin efflux transmembrane transporter activity2.52E-03
46GO:0016301: kinase activity2.63E-03
47GO:0000981: RNA polymerase II transcription factor activity, sequence-specific DNA binding2.67E-03
48GO:0015181: arginine transmembrane transporter activity3.07E-03
49GO:0035197: siRNA binding3.07E-03
50GO:0001872: (1->3)-beta-D-glucan binding3.07E-03
51GO:0015189: L-lysine transmembrane transporter activity3.07E-03
52GO:0005253: anion channel activity4.15E-03
53GO:0019199: transmembrane receptor protein kinase activity4.15E-03
54GO:0046556: alpha-L-arabinofuranosidase activity4.15E-03
55GO:0016279: protein-lysine N-methyltransferase activity4.15E-03
56GO:0004845: uracil phosphoribosyltransferase activity4.15E-03
57GO:0010011: auxin binding4.15E-03
58GO:0004345: glucose-6-phosphate dehydrogenase activity4.15E-03
59GO:0010328: auxin influx transmembrane transporter activity4.15E-03
60GO:0033612: receptor serine/threonine kinase binding4.82E-03
61GO:0018685: alkane 1-monooxygenase activity5.32E-03
62GO:0008725: DNA-3-methyladenine glycosylase activity5.32E-03
63GO:0004372: glycine hydroxymethyltransferase activity5.32E-03
64GO:0044212: transcription regulatory region DNA binding5.88E-03
65GO:0008519: ammonium transmembrane transporter activity6.60E-03
66GO:0005247: voltage-gated chloride channel activity6.60E-03
67GO:2001070: starch binding6.60E-03
68GO:0004605: phosphatidate cytidylyltransferase activity6.60E-03
69GO:1990714: hydroxyproline O-galactosyltransferase activity6.60E-03
70GO:0005524: ATP binding7.01E-03
71GO:0001085: RNA polymerase II transcription factor binding7.95E-03
72GO:0019900: kinase binding7.98E-03
73GO:0004849: uridine kinase activity7.98E-03
74GO:0045156: electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity7.98E-03
75GO:0042803: protein homodimerization activity8.15E-03
76GO:0005515: protein binding9.55E-03
77GO:0003777: microtubule motor activity1.01E-02
78GO:0004650: polygalacturonase activity1.24E-02
79GO:0008970: phosphatidylcholine 1-acylhydrolase activity1.27E-02
80GO:0005375: copper ion transmembrane transporter activity1.27E-02
81GO:0008168: methyltransferase activity1.31E-02
82GO:0000989: transcription factor activity, transcription factor binding1.44E-02
83GO:0008889: glycerophosphodiester phosphodiesterase activity1.44E-02
84GO:0004673: protein histidine kinase activity1.81E-02
85GO:0008171: O-methyltransferase activity1.81E-02
86GO:0001054: RNA polymerase I activity2.01E-02
87GO:0003700: transcription factor activity, sequence-specific DNA binding2.03E-02
88GO:0001228: transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding2.17E-02
89GO:0004521: endoribonuclease activity2.21E-02
90GO:0004022: alcohol dehydrogenase (NAD) activity2.42E-02
91GO:0015662: ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism2.42E-02
92GO:0031072: heat shock protein binding2.42E-02
93GO:0000155: phosphorelay sensor kinase activity2.42E-02
94GO:0005262: calcium channel activity2.42E-02
95GO:0009982: pseudouridine synthase activity2.42E-02
96GO:0004675: transmembrane receptor protein serine/threonine kinase activity2.55E-02
97GO:0042973: glucan endo-1,3-beta-D-glucosidase activity2.64E-02
98GO:0008083: growth factor activity2.64E-02
99GO:0004871: signal transducer activity2.68E-02
100GO:0003735: structural constituent of ribosome2.83E-02
101GO:0008017: microtubule binding2.94E-02
102GO:0043621: protein self-association3.32E-02
103GO:0008134: transcription factor binding3.33E-02
104GO:0043424: protein histidine kinase binding3.58E-02
105GO:0005345: purine nucleobase transmembrane transporter activity3.58E-02
106GO:0042802: identical protein binding3.75E-02
107GO:0004176: ATP-dependent peptidase activity3.82E-02
108GO:0035251: UDP-glucosyltransferase activity3.82E-02
109GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds4.55E-02
110GO:0031625: ubiquitin protein ligase binding4.56E-02
111GO:0008514: organic anion transmembrane transporter activity4.60E-02
112GO:0005215: transporter activity4.60E-02
113GO:0018024: histone-lysine N-methyltransferase activity4.87E-02
114GO:0004812: aminoacyl-tRNA ligase activity4.87E-02
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Gene type



Gene DE type