Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT4G31050

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0031222: arabinan catabolic process0.00E+00
2GO:0032194: ubiquinone biosynthetic process via 3,4-dihydroxy-5-polyprenylbenzoate0.00E+00
3GO:0090071: negative regulation of ribosome biogenesis0.00E+00
4GO:0019294: keto-3-deoxy-D-manno-octulosonic acid biosynthetic process0.00E+00
5GO:0010059: positive regulation of atrichoblast fate specification0.00E+00
6GO:0009606: tropism0.00E+00
7GO:1903224: regulation of endodermal cell differentiation0.00E+00
8GO:0045184: establishment of protein localization0.00E+00
9GO:0046620: regulation of organ growth2.05E-11
10GO:0009734: auxin-activated signaling pathway8.59E-11
11GO:0009733: response to auxin2.01E-10
12GO:0042793: transcription from plastid promoter4.56E-08
13GO:0009926: auxin polar transport4.08E-07
14GO:0040008: regulation of growth1.92E-06
15GO:0009657: plastid organization3.21E-05
16GO:0007275: multicellular organism development6.16E-05
17GO:0010306: rhamnogalacturonan II biosynthetic process6.89E-05
18GO:0016556: mRNA modification6.89E-05
19GO:0009658: chloroplast organization8.28E-05
20GO:0010252: auxin homeostasis1.31E-04
21GO:0009451: RNA modification1.77E-04
22GO:0048437: floral organ development4.53E-04
23GO:0006436: tryptophanyl-tRNA aminoacylation4.59E-04
24GO:0000066: mitochondrial ornithine transport4.59E-04
25GO:0010729: positive regulation of hydrogen peroxide biosynthetic process4.59E-04
26GO:0042659: regulation of cell fate specification4.59E-04
27GO:0046901: tetrahydrofolylpolyglutamate biosynthetic process4.59E-04
28GO:0070509: calcium ion import4.59E-04
29GO:0090558: plant epidermis development4.59E-04
30GO:0010063: positive regulation of trichoblast fate specification4.59E-04
31GO:0010480: microsporocyte differentiation4.59E-04
32GO:0042371: vitamin K biosynthetic process4.59E-04
33GO:0035987: endodermal cell differentiation4.59E-04
34GO:0048868: pollen tube development6.62E-04
35GO:0007389: pattern specification process6.90E-04
36GO:0000902: cell morphogenesis8.26E-04
37GO:0000373: Group II intron splicing8.26E-04
38GO:0009630: gravitropism9.39E-04
39GO:0010583: response to cyclopentenone9.39E-04
40GO:0001682: tRNA 5'-leader removal9.90E-04
41GO:2000123: positive regulation of stomatal complex development9.90E-04
42GO:0060359: response to ammonium ion9.90E-04
43GO:1902326: positive regulation of chlorophyll biosynthetic process9.90E-04
44GO:2000039: regulation of trichome morphogenesis9.90E-04
45GO:0018026: peptidyl-lysine monomethylation9.90E-04
46GO:0071497: cellular response to freezing9.90E-04
47GO:0009662: etioplast organization9.90E-04
48GO:1900033: negative regulation of trichome patterning9.90E-04
49GO:1904143: positive regulation of carotenoid biosynthetic process9.90E-04
50GO:0080009: mRNA methylation9.90E-04
51GO:0010027: thylakoid membrane organization1.37E-03
52GO:0043157: response to cation stress1.61E-03
53GO:0005977: glycogen metabolic process1.61E-03
54GO:0090708: specification of plant organ axis polarity1.61E-03
55GO:0006954: inflammatory response1.61E-03
56GO:0001578: microtubule bundle formation1.61E-03
57GO:0010207: photosystem II assembly1.92E-03
58GO:0010020: chloroplast fission1.92E-03
59GO:1902476: chloride transmembrane transport2.34E-03
60GO:0010071: root meristem specification2.34E-03
61GO:0010239: chloroplast mRNA processing2.34E-03
62GO:0044211: CTP salvage2.34E-03
63GO:0046739: transport of virus in multicellular host2.34E-03
64GO:2000904: regulation of starch metabolic process2.34E-03
65GO:0051289: protein homotetramerization2.34E-03
66GO:0043572: plastid fission2.34E-03
67GO:0009790: embryo development2.97E-03
68GO:1901141: regulation of lignin biosynthetic process3.14E-03
69GO:0048629: trichome patterning3.14E-03
70GO:0042274: ribosomal small subunit biogenesis3.14E-03
71GO:0051322: anaphase3.14E-03
72GO:0030104: water homeostasis3.14E-03
73GO:2000038: regulation of stomatal complex development3.14E-03
74GO:0046656: folic acid biosynthetic process3.14E-03
75GO:0006021: inositol biosynthetic process3.14E-03
76GO:0044206: UMP salvage3.14E-03
77GO:0010021: amylopectin biosynthetic process3.14E-03
78GO:0006730: one-carbon metabolic process3.53E-03
79GO:0010082: regulation of root meristem growth3.85E-03
80GO:0010158: abaxial cell fate specification4.03E-03
81GO:0010375: stomatal complex patterning4.03E-03
82GO:0009904: chloroplast accumulation movement4.03E-03
83GO:0010236: plastoquinone biosynthetic process4.03E-03
84GO:0009416: response to light stimulus4.56E-03
85GO:0008033: tRNA processing4.91E-03
86GO:0010405: arabinogalactan protein metabolic process4.99E-03
87GO:0009959: negative gravitropism4.99E-03
88GO:0006655: phosphatidylglycerol biosynthetic process4.99E-03
89GO:1902456: regulation of stomatal opening4.99E-03
90GO:0010315: auxin efflux4.99E-03
91GO:0006206: pyrimidine nucleobase metabolic process4.99E-03
92GO:0018258: protein O-linked glycosylation via hydroxyproline4.99E-03
93GO:0050665: hydrogen peroxide biosynthetic process4.99E-03
94GO:0009741: response to brassinosteroid5.30E-03
95GO:0080086: stamen filament development6.02E-03
96GO:0005975: carbohydrate metabolic process6.02E-03
97GO:2000067: regulation of root morphogenesis6.02E-03
98GO:0042372: phylloquinone biosynthetic process6.02E-03
99GO:0017148: negative regulation of translation6.02E-03
100GO:0009942: longitudinal axis specification6.02E-03
101GO:1901259: chloroplast rRNA processing6.02E-03
102GO:0046654: tetrahydrofolate biosynthetic process6.02E-03
103GO:0009903: chloroplast avoidance movement6.02E-03
104GO:0030488: tRNA methylation6.02E-03
105GO:0009854: oxidative photosynthetic carbon pathway6.02E-03
106GO:0048528: post-embryonic root development7.11E-03
107GO:0007050: cell cycle arrest7.11E-03
108GO:0009772: photosynthetic electron transport in photosystem II7.11E-03
109GO:0010050: vegetative phase change7.11E-03
110GO:0006821: chloride transport7.11E-03
111GO:0009396: folic acid-containing compound biosynthetic process7.11E-03
112GO:0030307: positive regulation of cell growth7.11E-03
113GO:0009828: plant-type cell wall loosening7.95E-03
114GO:0055075: potassium ion homeostasis8.28E-03
115GO:0000105: histidine biosynthetic process8.28E-03
116GO:0048564: photosystem I assembly8.28E-03
117GO:0001522: pseudouridine synthesis8.28E-03
118GO:0009850: auxin metabolic process8.28E-03
119GO:0048766: root hair initiation8.28E-03
120GO:0070413: trehalose metabolism in response to stress8.28E-03
121GO:0031540: regulation of anthocyanin biosynthetic process8.28E-03
122GO:0006357: regulation of transcription from RNA polymerase II promoter8.71E-03
123GO:0001666: response to hypoxia9.50E-03
124GO:0010497: plasmodesmata-mediated intercellular transport9.51E-03
125GO:0010204: defense response signaling pathway, resistance gene-independent9.51E-03
126GO:0006098: pentose-phosphate shunt1.08E-02
127GO:0009638: phototropism1.22E-02
128GO:0042761: very long-chain fatty acid biosynthetic process1.22E-02
129GO:2000280: regulation of root development1.22E-02
130GO:1900865: chloroplast RNA modification1.22E-02
131GO:0031425: chloroplast RNA processing1.22E-02
132GO:0048481: plant ovule development1.24E-02
133GO:0006259: DNA metabolic process1.36E-02
134GO:0006535: cysteine biosynthetic process from serine1.36E-02
135GO:0006811: ion transport1.37E-02
136GO:0010015: root morphogenesis1.50E-02
137GO:0006265: DNA topological change1.50E-02
138GO:0048229: gametophyte development1.50E-02
139GO:0006790: sulfur compound metabolic process1.66E-02
140GO:0016024: CDP-diacylglycerol biosynthetic process1.66E-02
141GO:0045037: protein import into chloroplast stroma1.66E-02
142GO:0010582: floral meristem determinacy1.66E-02
143GO:0010075: regulation of meristem growth1.81E-02
144GO:0006094: gluconeogenesis1.81E-02
145GO:2000012: regulation of auxin polar transport1.81E-02
146GO:0009785: blue light signaling pathway1.81E-02
147GO:0009691: cytokinin biosynthetic process1.81E-02
148GO:0010229: inflorescence development1.81E-02
149GO:0009934: regulation of meristem structural organization1.98E-02
150GO:0048467: gynoecium development1.98E-02
151GO:0046854: phosphatidylinositol phosphorylation2.14E-02
152GO:0090351: seedling development2.14E-02
153GO:0070588: calcium ion transmembrane transport2.14E-02
154GO:0006833: water transport2.32E-02
155GO:0042023: DNA endoreduplication2.32E-02
156GO:0005992: trehalose biosynthetic process2.49E-02
157GO:0019344: cysteine biosynthetic process2.49E-02
158GO:0080147: root hair cell development2.49E-02
159GO:0009664: plant-type cell wall organization2.57E-02
160GO:0010073: meristem maintenance2.67E-02
161GO:0051302: regulation of cell division2.67E-02
162GO:0019953: sexual reproduction2.67E-02
163GO:0006418: tRNA aminoacylation for protein translation2.67E-02
164GO:0009826: unidimensional cell growth2.76E-02
165GO:0016998: cell wall macromolecule catabolic process2.86E-02
166GO:0015992: proton transport2.86E-02
167GO:0019748: secondary metabolic process3.05E-02
168GO:0016226: iron-sulfur cluster assembly3.05E-02
169GO:0031348: negative regulation of defense response3.05E-02
170GO:0009860: pollen tube growth3.17E-02
171GO:0009831: plant-type cell wall modification involved in multidimensional cell growth3.25E-02
172GO:0009686: gibberellin biosynthetic process3.25E-02
173GO:0042127: regulation of cell proliferation3.45E-02
174GO:0009723: response to ethylene3.47E-02
175GO:0010118: stomatal movement3.86E-02
176GO:0048653: anther development3.86E-02
177GO:0000226: microtubule cytoskeleton organization3.86E-02
178GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway3.94E-02
179GO:0010268: brassinosteroid homeostasis4.07E-02
180GO:0009958: positive gravitropism4.07E-02
181GO:0010305: leaf vascular tissue pattern formation4.07E-02
182GO:0006662: glycerol ether metabolic process4.07E-02
183GO:0009742: brassinosteroid mediated signaling pathway4.15E-02
184GO:0007059: chromosome segregation4.28E-02
185GO:0009646: response to absence of light4.28E-02
186GO:0048544: recognition of pollen4.28E-02
187GO:0009851: auxin biosynthetic process4.50E-02
188GO:0019252: starch biosynthetic process4.50E-02
189GO:0008654: phospholipid biosynthetic process4.50E-02
190GO:0016132: brassinosteroid biosynthetic process4.72E-02
191GO:0048510: regulation of timing of transition from vegetative to reproductive phase4.72E-02
192GO:0002229: defense response to oomycetes4.72E-02
193GO:0032502: developmental process4.95E-02
194GO:0019761: glucosinolate biosynthetic process4.95E-02
RankGO TermAdjusted P value
1GO:0070009: serine-type aminopeptidase activity0.00E+00
2GO:0052834: inositol monophosphate phosphatase activity0.00E+00
3GO:0008676: 3-deoxy-8-phosphooctulonate synthase activity0.00E+00
4GO:0071633: dihydroceramidase activity0.00E+00
5GO:0046428: 1,4-dihydroxy-2-naphthoate octaprenyltransferase activity0.00E+00
6GO:0004401: histidinol-phosphatase activity0.00E+00
7GO:0004056: argininosuccinate lyase activity0.00E+00
8GO:0004519: endonuclease activity1.06E-04
9GO:0010347: L-galactose-1-phosphate phosphatase activity4.59E-04
10GO:0005227: calcium activated cation channel activity4.59E-04
11GO:0051777: ent-kaurenoate oxidase activity4.59E-04
12GO:0016422: mRNA (2'-O-methyladenosine-N6-)-methyltransferase activity4.59E-04
13GO:0004156: dihydropteroate synthase activity4.59E-04
14GO:0003848: 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase activity4.59E-04
15GO:0005290: L-histidine transmembrane transporter activity4.59E-04
16GO:0033946: xyloglucan-specific endo-beta-1,4-glucanase activity4.59E-04
17GO:0052906: tRNA (guanine(37)-N(1))-methyltransferase activity4.59E-04
18GO:0052381: tRNA dimethylallyltransferase activity4.59E-04
19GO:0004830: tryptophan-tRNA ligase activity4.59E-04
20GO:0009672: auxin:proton symporter activity9.73E-04
21GO:0004326: tetrahydrofolylpolyglutamate synthase activity9.90E-04
22GO:0004047: aminomethyltransferase activity9.90E-04
23GO:0052832: inositol monophosphate 3-phosphatase activity9.90E-04
24GO:0000774: adenyl-nucleotide exchange factor activity9.90E-04
25GO:0008805: carbon-monoxide oxygenase activity9.90E-04
26GO:0008934: inositol monophosphate 1-phosphatase activity9.90E-04
27GO:0052833: inositol monophosphate 4-phosphatase activity9.90E-04
28GO:0000064: L-ornithine transmembrane transporter activity9.90E-04
29GO:0019156: isoamylase activity9.90E-04
30GO:0000179: rRNA (adenine-N6,N6-)-dimethyltransferase activity9.90E-04
31GO:0046524: sucrose-phosphate synthase activity1.61E-03
32GO:0070330: aromatase activity1.61E-03
33GO:0017150: tRNA dihydrouridine synthase activity1.61E-03
34GO:0016805: dipeptidase activity1.61E-03
35GO:0010329: auxin efflux transmembrane transporter activity1.70E-03
36GO:0042973: glucan endo-1,3-beta-D-glucosidase activity1.92E-03
37GO:0052853: long-chain-(S)-2-hydroxy-long-chain-acid oxidase activity2.34E-03
38GO:0001872: (1->3)-beta-D-glucan binding2.34E-03
39GO:0015189: L-lysine transmembrane transporter activity2.34E-03
40GO:0052854: medium-chain-(S)-2-hydroxy-acid oxidase activity2.34E-03
41GO:0009678: hydrogen-translocating pyrophosphatase activity2.34E-03
42GO:0015181: arginine transmembrane transporter activity2.34E-03
43GO:0052852: very-long-chain-(S)-2-hydroxy-acid oxidase activity2.34E-03
44GO:0043023: ribosomal large subunit binding2.34E-03
45GO:0016706: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors2.61E-03
46GO:0016279: protein-lysine N-methyltransferase activity3.14E-03
47GO:0004845: uracil phosphoribosyltransferase activity3.14E-03
48GO:0005253: anion channel activity3.14E-03
49GO:0008891: glycolate oxidase activity3.14E-03
50GO:0046556: alpha-L-arabinofuranosidase activity3.14E-03
51GO:0004659: prenyltransferase activity3.14E-03
52GO:0004176: ATP-dependent peptidase activity3.22E-03
53GO:0003723: RNA binding3.59E-03
54GO:0001135: transcription factor activity, RNA polymerase II transcription factor recruiting3.69E-03
55GO:0016773: phosphotransferase activity, alcohol group as acceptor4.03E-03
56GO:0018685: alkane 1-monooxygenase activity4.03E-03
57GO:0070696: transmembrane receptor protein serine/threonine kinase binding4.03E-03
58GO:0000981: RNA polymerase II transcription factor activity, sequence-specific DNA binding4.46E-03
59GO:0005247: voltage-gated chloride channel activity4.99E-03
60GO:0004605: phosphatidate cytidylyltransferase activity4.99E-03
61GO:0080030: methyl indole-3-acetate esterase activity4.99E-03
62GO:1990714: hydroxyproline O-galactosyltransferase activity4.99E-03
63GO:0004332: fructose-bisphosphate aldolase activity4.99E-03
64GO:0004526: ribonuclease P activity4.99E-03
65GO:0004556: alpha-amylase activity4.99E-03
66GO:0004124: cysteine synthase activity6.02E-03
67GO:0008195: phosphatidate phosphatase activity6.02E-03
68GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity6.02E-03
69GO:0004849: uridine kinase activity6.02E-03
70GO:0004656: procollagen-proline 4-dioxygenase activity6.02E-03
71GO:0004427: inorganic diphosphatase activity7.11E-03
72GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds7.86E-03
73GO:0008237: metallopeptidase activity8.45E-03
74GO:0008173: RNA methyltransferase activity9.51E-03
75GO:0003918: DNA topoisomerase type II (ATP-hydrolyzing) activity9.51E-03
76GO:0019843: rRNA binding1.11E-02
77GO:0004805: trehalose-phosphatase activity1.36E-02
78GO:0003993: acid phosphatase activity1.65E-02
79GO:0004089: carbonate dehydratase activity1.81E-02
80GO:0031072: heat shock protein binding1.81E-02
81GO:0005262: calcium channel activity1.81E-02
82GO:0009982: pseudouridine synthase activity1.81E-02
83GO:0004565: beta-galactosidase activity1.81E-02
84GO:0004022: alcohol dehydrogenase (NAD) activity1.81E-02
85GO:0043621: protein self-association2.21E-02
86GO:0031418: L-ascorbic acid binding2.49E-02
87GO:0051087: chaperone binding2.67E-02
88GO:0008408: 3'-5' exonuclease activity2.86E-02
89GO:0004707: MAP kinase activity2.86E-02
90GO:0033612: receptor serine/threonine kinase binding2.86E-02
91GO:0004650: polygalacturonase activity3.58E-02
92GO:0004812: aminoacyl-tRNA ligase activity3.65E-02
93GO:0047134: protein-disulfide reductase activity3.65E-02
94GO:0051082: unfolded protein binding3.91E-02
95GO:0001085: RNA polymerase II transcription factor binding4.07E-02
96GO:0004527: exonuclease activity4.07E-02
97GO:0004791: thioredoxin-disulfide reductase activity4.28E-02
98GO:0010181: FMN binding4.28E-02
99GO:0019901: protein kinase binding4.50E-02
100GO:0044212: transcription regulatory region DNA binding4.71E-02
101GO:0016762: xyloglucan:xyloglucosyl transferase activity4.72E-02
102GO:0004518: nuclease activity4.95E-02
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Gene type



Gene DE type