Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT4G30620

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0006399: tRNA metabolic process0.00E+00
2GO:0006429: leucyl-tRNA aminoacylation0.00E+00
3GO:0070979: protein K11-linked ubiquitination0.00E+00
4GO:1905421: regulation of plant organ morphogenesis0.00E+00
5GO:0043488: regulation of mRNA stability0.00E+00
6GO:0000455: enzyme-directed rRNA pseudouridine synthesis0.00E+00
7GO:0030155: regulation of cell adhesion0.00E+00
8GO:0046460: neutral lipid biosynthetic process0.00E+00
9GO:0032194: ubiquinone biosynthetic process via 3,4-dihydroxy-5-polyprenylbenzoate0.00E+00
10GO:0010422: regulation of brassinosteroid biosynthetic process0.00E+00
11GO:0018131: oxazole or thiazole biosynthetic process0.00E+00
12GO:0031116: positive regulation of microtubule polymerization0.00E+00
13GO:0090071: negative regulation of ribosome biogenesis0.00E+00
14GO:0000489: maturation of SSU-rRNA from tetracistronic rRNA transcript (SSU-rRNA, LSU-rRNA, 4.5S-rRNA, 5S-rRNA)0.00E+00
15GO:1905177: tracheary element differentiation0.00E+00
16GO:0000488: maturation of LSU-rRNA from tetracistronic rRNA transcript (SSU-rRNA, LSU-rRNA, 4.5S-rRNA, 5S-rRNA)0.00E+00
17GO:0090042: tubulin deacetylation0.00E+00
18GO:0009658: chloroplast organization4.28E-08
19GO:0009734: auxin-activated signaling pathway4.72E-06
20GO:0009733: response to auxin2.25E-05
21GO:0046620: regulation of organ growth3.86E-05
22GO:0006415: translational termination1.52E-04
23GO:0040008: regulation of growth3.17E-04
24GO:0006655: phosphatidylglycerol biosynthetic process3.68E-04
25GO:0042793: transcription from plastid promoter3.68E-04
26GO:0042372: phylloquinone biosynthetic process4.90E-04
27GO:0042371: vitamin K biosynthetic process5.72E-04
28GO:2000021: regulation of ion homeostasis5.72E-04
29GO:0034080: CENP-A containing nucleosome assembly5.72E-04
30GO:1902458: positive regulation of stomatal opening5.72E-04
31GO:0006747: FAD biosynthetic process5.72E-04
32GO:0006419: alanyl-tRNA aminoacylation5.72E-04
33GO:0000476: maturation of 4.5S rRNA5.72E-04
34GO:0000967: rRNA 5'-end processing5.72E-04
35GO:0051418: microtubule nucleation by microtubule organizing center5.72E-04
36GO:0070509: calcium ion import5.72E-04
37GO:0046901: tetrahydrofolylpolyglutamate biosynthetic process5.72E-04
38GO:0043266: regulation of potassium ion transport5.72E-04
39GO:0042547: cell wall modification involved in multidimensional cell growth5.72E-04
40GO:0006730: one-carbon metabolic process6.00E-04
41GO:0048528: post-embryonic root development6.28E-04
42GO:0006400: tRNA modification6.28E-04
43GO:0009231: riboflavin biosynthetic process7.81E-04
44GO:0006353: DNA-templated transcription, termination7.81E-04
45GO:0071482: cellular response to light stimulus9.50E-04
46GO:0009657: plastid organization9.50E-04
47GO:0032544: plastid translation9.50E-04
48GO:0009926: auxin polar transport1.02E-03
49GO:0000373: Group II intron splicing1.14E-03
50GO:1903426: regulation of reactive oxygen species biosynthetic process1.23E-03
51GO:0015804: neutral amino acid transport1.23E-03
52GO:0034470: ncRNA processing1.23E-03
53GO:0033566: gamma-tubulin complex localization1.23E-03
54GO:1900033: negative regulation of trichome patterning1.23E-03
55GO:0034755: iron ion transmembrane transport1.23E-03
56GO:0009220: pyrimidine ribonucleotide biosynthetic process1.23E-03
57GO:0045036: protein targeting to chloroplast1.56E-03
58GO:0009684: indoleacetic acid biosynthetic process1.81E-03
59GO:0006352: DNA-templated transcription, initiation1.81E-03
60GO:0045493: xylan catabolic process2.02E-03
61GO:0006760: folic acid-containing compound metabolic process2.02E-03
62GO:0007052: mitotic spindle organization2.02E-03
63GO:0048281: inflorescence morphogenesis2.02E-03
64GO:0006954: inflammatory response2.02E-03
65GO:0031145: anaphase-promoting complex-dependent catabolic process2.02E-03
66GO:0010623: programmed cell death involved in cell development2.02E-03
67GO:0001578: microtubule bundle formation2.02E-03
68GO:0016024: CDP-diacylglycerol biosynthetic process2.07E-03
69GO:0045037: protein import into chloroplast stroma2.07E-03
70GO:2000012: regulation of auxin polar transport2.36E-03
71GO:0048467: gynoecium development2.67E-03
72GO:0051415: interphase microtubule nucleation by interphase microtubule organizing center2.93E-03
73GO:2001141: regulation of RNA biosynthetic process2.93E-03
74GO:0034508: centromere complex assembly2.93E-03
75GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly2.93E-03
76GO:0030071: regulation of mitotic metaphase/anaphase transition2.93E-03
77GO:0051639: actin filament network formation2.93E-03
78GO:0046653: tetrahydrofolate metabolic process2.93E-03
79GO:0010239: chloroplast mRNA processing2.93E-03
80GO:0009226: nucleotide-sugar biosynthetic process2.93E-03
81GO:0090307: mitotic spindle assembly2.93E-03
82GO:0010148: transpiration2.93E-03
83GO:0016556: mRNA modification2.93E-03
84GO:0090351: seedling development2.99E-03
85GO:0048629: trichome patterning3.95E-03
86GO:0051764: actin crosslink formation3.95E-03
87GO:0015846: polyamine transport3.95E-03
88GO:0051322: anaphase3.95E-03
89GO:0046656: folic acid biosynthetic process3.95E-03
90GO:0022622: root system development3.95E-03
91GO:0071483: cellular response to blue light3.95E-03
92GO:0044205: 'de novo' UMP biosynthetic process3.95E-03
93GO:0010508: positive regulation of autophagy3.95E-03
94GO:0007020: microtubule nucleation3.95E-03
95GO:0061077: chaperone-mediated protein folding4.50E-03
96GO:0009790: embryo development4.96E-03
97GO:0016123: xanthophyll biosynthetic process5.07E-03
98GO:0016131: brassinosteroid metabolic process5.07E-03
99GO:0010158: abaxial cell fate specification5.07E-03
100GO:0032876: negative regulation of DNA endoreduplication5.07E-03
101GO:0046785: microtubule polymerization5.07E-03
102GO:0032543: mitochondrial translation5.07E-03
103GO:0010236: plastoquinone biosynthetic process5.07E-03
104GO:0045038: protein import into chloroplast thylakoid membrane5.07E-03
105GO:0008283: cell proliferation5.54E-03
106GO:0010190: cytochrome b6f complex assembly6.29E-03
107GO:0016554: cytidine to uridine editing6.29E-03
108GO:0032973: amino acid export6.29E-03
109GO:0050665: hydrogen peroxide biosynthetic process6.29E-03
110GO:0009228: thiamine biosynthetic process6.29E-03
111GO:0009789: positive regulation of abscisic acid-activated signaling pathway6.35E-03
112GO:0045490: pectin catabolic process6.41E-03
113GO:0010087: phloem or xylem histogenesis6.87E-03
114GO:0009958: positive gravitropism7.41E-03
115GO:0009854: oxidative photosynthetic carbon pathway7.60E-03
116GO:0080086: stamen filament development7.60E-03
117GO:0009648: photoperiodism7.60E-03
118GO:0006458: 'de novo' protein folding7.60E-03
119GO:0017148: negative regulation of translation7.60E-03
120GO:0009942: longitudinal axis specification7.60E-03
121GO:0042026: protein refolding7.60E-03
122GO:0034389: lipid particle organization7.60E-03
123GO:0046654: tetrahydrofolate biosynthetic process7.60E-03
124GO:0030488: tRNA methylation7.60E-03
125GO:1901259: chloroplast rRNA processing7.60E-03
126GO:0015693: magnesium ion transport9.00E-03
127GO:0010103: stomatal complex morphogenesis9.00E-03
128GO:0032880: regulation of protein localization9.00E-03
129GO:0009395: phospholipid catabolic process9.00E-03
130GO:0009772: photosynthetic electron transport in photosystem II9.00E-03
131GO:0043090: amino acid import9.00E-03
132GO:0070370: cellular heat acclimation9.00E-03
133GO:0010050: vegetative phase change9.00E-03
134GO:0010444: guard mother cell differentiation9.00E-03
135GO:0006207: 'de novo' pyrimidine nucleobase biosynthetic process9.00E-03
136GO:0007275: multicellular organism development1.02E-02
137GO:0006875: cellular metal ion homeostasis1.05E-02
138GO:0031540: regulation of anthocyanin biosynthetic process1.05E-02
139GO:0000105: histidine biosynthetic process1.05E-02
140GO:0052543: callose deposition in cell wall1.05E-02
141GO:0006402: mRNA catabolic process1.05E-02
142GO:0009850: auxin metabolic process1.05E-02
143GO:0010078: maintenance of root meristem identity1.05E-02
144GO:0009704: de-etiolation1.05E-02
145GO:0032875: regulation of DNA endoreduplication1.05E-02
146GO:0042255: ribosome assembly1.05E-02
147GO:2000070: regulation of response to water deprivation1.05E-02
148GO:0070413: trehalose metabolism in response to stress1.05E-02
149GO:0010252: auxin homeostasis1.12E-02
150GO:0043562: cellular response to nitrogen levels1.21E-02
151GO:0001558: regulation of cell growth1.21E-02
152GO:0006002: fructose 6-phosphate metabolic process1.21E-02
153GO:0022900: electron transport chain1.21E-02
154GO:0009827: plant-type cell wall modification1.21E-02
155GO:0010204: defense response signaling pathway, resistance gene-independent1.21E-02
156GO:0007389: pattern specification process1.21E-02
157GO:0010027: thylakoid membrane organization1.33E-02
158GO:0000902: cell morphogenesis1.37E-02
159GO:0080144: amino acid homeostasis1.37E-02
160GO:0006098: pentose-phosphate shunt1.37E-02
161GO:0019432: triglyceride biosynthetic process1.37E-02
162GO:0009627: systemic acquired resistance1.49E-02
163GO:0009793: embryo development ending in seed dormancy1.52E-02
164GO:0042761: very long-chain fatty acid biosynthetic process1.54E-02
165GO:0009638: phototropism1.54E-02
166GO:1900865: chloroplast RNA modification1.54E-02
167GO:0010411: xyloglucan metabolic process1.57E-02
168GO:0006949: syncytium formation1.72E-02
169GO:0006259: DNA metabolic process1.72E-02
170GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway1.81E-02
171GO:0010015: root morphogenesis1.91E-02
172GO:0019684: photosynthesis, light reaction1.91E-02
173GO:0006265: DNA topological change1.91E-02
174GO:0009089: lysine biosynthetic process via diaminopimelate1.91E-02
175GO:0009773: photosynthetic electron transport in photosystem I1.91E-02
176GO:1903507: negative regulation of nucleic acid-templated transcription1.91E-02
177GO:0006879: cellular iron ion homeostasis1.91E-02
178GO:0048527: lateral root development2.02E-02
179GO:0006468: protein phosphorylation2.10E-02
180GO:0010582: floral meristem determinacy2.11E-02
181GO:0010229: inflorescence development2.31E-02
182GO:0050826: response to freezing2.31E-02
183GO:0006094: gluconeogenesis2.31E-02
184GO:0010588: cotyledon vascular tissue pattern formation2.31E-02
185GO:0010628: positive regulation of gene expression2.31E-02
186GO:0009785: blue light signaling pathway2.31E-02
187GO:0010020: chloroplast fission2.51E-02
188GO:0019853: L-ascorbic acid biosynthetic process2.73E-02
189GO:0071732: cellular response to nitric oxide2.73E-02
190GO:0010030: positive regulation of seed germination2.73E-02
191GO:0070588: calcium ion transmembrane transport2.73E-02
192GO:0006071: glycerol metabolic process2.95E-02
193GO:0006833: water transport2.95E-02
194GO:0010025: wax biosynthetic process2.95E-02
195GO:0042023: DNA endoreduplication2.95E-02
196GO:0007166: cell surface receptor signaling pathway3.02E-02
197GO:0005992: trehalose biosynthetic process3.17E-02
198GO:0009116: nucleoside metabolic process3.17E-02
199GO:0009944: polarity specification of adaxial/abaxial axis3.17E-02
200GO:0051017: actin filament bundle assembly3.17E-02
201GO:0030150: protein import into mitochondrial matrix3.17E-02
202GO:0007010: cytoskeleton organization3.17E-02
203GO:0009965: leaf morphogenesis3.22E-02
204GO:0051302: regulation of cell division3.40E-02
205GO:0016575: histone deacetylation3.40E-02
206GO:0006418: tRNA aminoacylation for protein translation3.40E-02
207GO:0043622: cortical microtubule organization3.40E-02
208GO:0009664: plant-type cell wall organization3.59E-02
209GO:0003333: amino acid transmembrane transport3.64E-02
210GO:0016998: cell wall macromolecule catabolic process3.64E-02
211GO:0006364: rRNA processing3.85E-02
212GO:0007005: mitochondrion organization3.88E-02
213GO:0031348: negative regulation of defense response3.88E-02
214GO:0009814: defense response, incompatible interaction3.88E-02
215GO:2000022: regulation of jasmonic acid mediated signaling pathway3.88E-02
216GO:0001944: vasculature development4.13E-02
217GO:0006012: galactose metabolic process4.13E-02
218GO:0009831: plant-type cell wall modification involved in multidimensional cell growth4.13E-02
219GO:0010082: regulation of root meristem growth4.13E-02
220GO:0071369: cellular response to ethylene stimulus4.13E-02
221GO:0010089: xylem development4.38E-02
222GO:0009306: protein secretion4.38E-02
223GO:0006096: glycolytic process4.55E-02
224GO:0016117: carotenoid biosynthetic process4.64E-02
225GO:0008284: positive regulation of cell proliferation4.64E-02
226GO:0048367: shoot system development4.69E-02
227GO:0042631: cellular response to water deprivation4.90E-02
228GO:0000226: microtubule cytoskeleton organization4.90E-02
229GO:0080022: primary root development4.90E-02
230GO:0008033: tRNA processing4.90E-02
231GO:0034220: ion transmembrane transport4.90E-02
RankGO TermAdjusted P value
1GO:0004636: phosphoribosyl-ATP diphosphatase activity0.00E+00
2GO:0061634: alpha-D-xyloside xylohydrolase0.00E+00
3GO:0043864: indoleacetamide hydrolase activity0.00E+00
4GO:0004588: orotate phosphoribosyltransferase activity0.00E+00
5GO:0010349: L-galactose dehydrogenase activity0.00E+00
6GO:0008115: sarcosine oxidase activity0.00E+00
7GO:0004590: orotidine-5'-phosphate decarboxylase activity0.00E+00
8GO:0019808: polyamine binding0.00E+00
9GO:0043014: alpha-tubulin binding0.00E+00
10GO:0080176: xyloglucan 1,6-alpha-xylosidase activity0.00E+00
11GO:0004635: phosphoribosyl-AMP cyclohydrolase activity0.00E+00
12GO:0051721: protein phosphatase 2A binding0.00E+00
13GO:0042903: tubulin deacetylase activity0.00E+00
14GO:0004823: leucine-tRNA ligase activity0.00E+00
15GO:0046428: 1,4-dihydroxy-2-naphthoate octaprenyltransferase activity0.00E+00
16GO:0008756: o-succinylbenzoate-CoA ligase activity0.00E+00
17GO:0004056: argininosuccinate lyase activity0.00E+00
18GO:0004326: tetrahydrofolylpolyglutamate synthase activity1.42E-05
19GO:0030570: pectate lyase activity6.23E-05
20GO:0003747: translation release factor activity7.28E-05
21GO:0016149: translation release factor activity, codon specific1.00E-04
22GO:0016851: magnesium chelatase activity1.00E-04
23GO:0001053: plastid sigma factor activity1.73E-04
24GO:0016987: sigma factor activity1.73E-04
25GO:0004040: amidase activity2.63E-04
26GO:0050139: nicotinate-N-glucosyltransferase activity5.72E-04
27GO:0050567: glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity5.72E-04
28GO:0004813: alanine-tRNA ligase activity5.72E-04
29GO:0008835: diaminohydroxyphosphoribosylaminopyrimidine deaminase activity5.72E-04
30GO:0015088: copper uptake transmembrane transporter activity5.72E-04
31GO:0033946: xyloglucan-specific endo-beta-1,4-glucanase activity5.72E-04
32GO:0030785: [ribulose-bisphosphate carboxylase]-lysine N-methyltransferase activity5.72E-04
33GO:0043022: ribosome binding7.81E-04
34GO:0016829: lyase activity9.98E-04
35GO:0043621: protein self-association1.15E-03
36GO:0010291: carotene beta-ring hydroxylase activity1.23E-03
37GO:0050362: L-tryptophan:2-oxoglutarate aminotransferase activity1.23E-03
38GO:0009977: proton motive force dependent protein transmembrane transporter activity1.23E-03
39GO:0102083: 7,8-dihydromonapterin aldolase activity1.23E-03
40GO:0080097: L-tryptophan:pyruvate aminotransferase activity1.23E-03
41GO:0004150: dihydroneopterin aldolase activity1.23E-03
42GO:0008839: 4-hydroxy-tetrahydrodipicolinate reductase1.23E-03
43GO:0003919: FMN adenylyltransferase activity1.23E-03
44GO:0015172: acidic amino acid transmembrane transporter activity1.23E-03
45GO:0005381: iron ion transmembrane transporter activity1.34E-03
46GO:0052692: raffinose alpha-galactosidase activity2.02E-03
47GO:0070330: aromatase activity2.02E-03
48GO:0002161: aminoacyl-tRNA editing activity2.02E-03
49GO:0004557: alpha-galactosidase activity2.02E-03
50GO:0043023: ribosomal large subunit binding2.93E-03
51GO:0052853: long-chain-(S)-2-hydroxy-long-chain-acid oxidase activity2.93E-03
52GO:0001872: (1->3)-beta-D-glucan binding2.93E-03
53GO:0052854: medium-chain-(S)-2-hydroxy-acid oxidase activity2.93E-03
54GO:0019201: nucleotide kinase activity2.93E-03
55GO:0015175: neutral amino acid transmembrane transporter activity2.93E-03
56GO:0048487: beta-tubulin binding2.93E-03
57GO:0052852: very-long-chain-(S)-2-hydroxy-acid oxidase activity2.93E-03
58GO:0005525: GTP binding3.05E-03
59GO:0016788: hydrolase activity, acting on ester bonds3.43E-03
60GO:0016614: oxidoreductase activity, acting on CH-OH group of donors3.56E-03
61GO:0005528: FK506 binding3.70E-03
62GO:0046556: alpha-L-arabinofuranosidase activity3.95E-03
63GO:0004659: prenyltransferase activity3.95E-03
64GO:0016810: hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds3.95E-03
65GO:0004045: aminoacyl-tRNA hydrolase activity3.95E-03
66GO:0009044: xylan 1,4-beta-xylosidase activity3.95E-03
67GO:0043015: gamma-tubulin binding3.95E-03
68GO:0019199: transmembrane receptor protein kinase activity3.95E-03
69GO:0042277: peptide binding3.95E-03
70GO:0008891: glycolate oxidase activity3.95E-03
71GO:0003841: 1-acylglycerol-3-phosphate O-acyltransferase activity3.95E-03
72GO:0004176: ATP-dependent peptidase activity4.50E-03
73GO:0016846: carbon-sulfur lyase activity5.07E-03
74GO:0018685: alkane 1-monooxygenase activity5.07E-03
75GO:0004675: transmembrane receptor protein serine/threonine kinase activity5.75E-03
76GO:0004605: phosphatidate cytidylyltransferase activity6.29E-03
77GO:0080030: methyl indole-3-acetate esterase activity6.29E-03
78GO:0004332: fructose-bisphosphate aldolase activity6.29E-03
79GO:0016208: AMP binding6.29E-03
80GO:0042578: phosphoric ester hydrolase activity6.29E-03
81GO:0008195: phosphatidate phosphatase activity7.60E-03
82GO:0004017: adenylate kinase activity7.60E-03
83GO:0003730: mRNA 3'-UTR binding7.60E-03
84GO:0004144: diacylglycerol O-acyltransferase activity7.60E-03
85GO:0004723: calcium-dependent protein serine/threonine phosphatase activity7.60E-03
86GO:0019899: enzyme binding9.00E-03
87GO:0003872: 6-phosphofructokinase activity9.00E-03
88GO:0004033: aldo-keto reductase (NADP) activity1.05E-02
89GO:0008237: metallopeptidase activity1.19E-02
90GO:0032041: NAD-dependent histone deacetylase activity (H3-K14 specific)1.21E-02
91GO:0003918: DNA topoisomerase type II (ATP-hydrolyzing) activity1.21E-02
92GO:0016597: amino acid binding1.26E-02
93GO:0009672: auxin:proton symporter activity1.54E-02
94GO:0004713: protein tyrosine kinase activity1.72E-02
95GO:0004805: trehalose-phosphatase activity1.72E-02
96GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity1.75E-02
97GO:0044183: protein binding involved in protein folding1.91E-02
98GO:0047372: acylglycerol lipase activity1.91E-02
99GO:0008327: methyl-CpG binding1.91E-02
100GO:0052689: carboxylic ester hydrolase activity2.00E-02
101GO:0000049: tRNA binding2.11E-02
102GO:0004089: carbonate dehydratase activity2.31E-02
103GO:0015095: magnesium ion transmembrane transporter activity2.31E-02
104GO:0031072: heat shock protein binding2.31E-02
105GO:0005262: calcium channel activity2.31E-02
106GO:0009982: pseudouridine synthase activity2.31E-02
107GO:0004022: alcohol dehydrogenase (NAD) activity2.31E-02
108GO:0004565: beta-galactosidase activity2.31E-02
109GO:0010329: auxin efflux transmembrane transporter activity2.31E-02
110GO:0015266: protein channel activity2.31E-02
111GO:0003993: acid phosphatase activity2.32E-02
112GO:0008083: growth factor activity2.51E-02
113GO:0008017: microtubule binding2.70E-02
114GO:0005524: ATP binding2.81E-02
115GO:0102336: 3-oxo-arachidoyl-CoA synthase activity2.95E-02
116GO:0102337: 3-oxo-cerotoyl-CoA synthase activity2.95E-02
117GO:0102338: 3-oxo-lignoceronyl-CoA synthase activity2.95E-02
118GO:0003924: GTPase activity3.07E-02
119GO:0051536: iron-sulfur cluster binding3.17E-02
120GO:0004407: histone deacetylase activity3.17E-02
121GO:0003714: transcription corepressor activity3.17E-02
122GO:0003755: peptidyl-prolyl cis-trans isomerase activity3.34E-02
123GO:0015079: potassium ion transmembrane transporter activity3.40E-02
124GO:0003899: DNA-directed 5'-3' RNA polymerase activity3.85E-02
125GO:0003723: RNA binding4.07E-02
126GO:0015171: amino acid transmembrane transporter activity4.26E-02
127GO:0003727: single-stranded RNA binding4.38E-02
128GO:0004812: aminoacyl-tRNA ligase activity4.64E-02
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Gene type



Gene DE type