GO Enrichment Analysis of Co-expressed Genes with
AT4G29910
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0090627: plant epidermal cell differentiation | 0.00E+00 |
| 2 | GO:0090322: regulation of superoxide metabolic process | 0.00E+00 |
| 3 | GO:0000372: Group I intron splicing | 0.00E+00 |
| 4 | GO:1901528: hydrogen peroxide mediated signaling pathway involved in stomatal movement | 0.00E+00 |
| 5 | GO:0043972: histone H3-K23 acetylation | 0.00E+00 |
| 6 | GO:0080127: fruit septum development | 0.00E+00 |
| 7 | GO:0042794: rRNA transcription from plastid promoter | 0.00E+00 |
| 8 | GO:0044154: histone H3-K14 acetylation | 0.00E+00 |
| 9 | GO:0010323: negative regulation of isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway | 0.00E+00 |
| 10 | GO:0045014: negative regulation of transcription by glucose | 0.00E+00 |
| 11 | GO:0006353: DNA-templated transcription, termination | 5.66E-06 |
| 12 | GO:0042793: transcription from plastid promoter | 1.09E-04 |
| 13 | GO:0040008: regulation of growth | 1.67E-04 |
| 14 | GO:0042255: ribosome assembly | 2.48E-04 |
| 15 | GO:0006999: nuclear pore organization | 2.63E-04 |
| 16 | GO:0043971: histone H3-K18 acetylation | 2.63E-04 |
| 17 | GO:1903866: palisade mesophyll development | 2.63E-04 |
| 18 | GO:0036228: protein targeting to nuclear inner membrane | 2.63E-04 |
| 19 | GO:0033206: meiotic cytokinesis | 2.63E-04 |
| 20 | GO:0034757: negative regulation of iron ion transport | 2.63E-04 |
| 21 | GO:0009658: chloroplast organization | 4.23E-04 |
| 22 | GO:0048829: root cap development | 5.12E-04 |
| 23 | GO:1901529: positive regulation of anion channel activity | 5.78E-04 |
| 24 | GO:0010569: regulation of double-strand break repair via homologous recombination | 5.78E-04 |
| 25 | GO:2000071: regulation of defense response by callose deposition | 5.78E-04 |
| 26 | GO:0010271: regulation of chlorophyll catabolic process | 5.78E-04 |
| 27 | GO:1900033: negative regulation of trichome patterning | 5.78E-04 |
| 28 | GO:0080009: mRNA methylation | 5.78E-04 |
| 29 | GO:0010588: cotyledon vascular tissue pattern formation | 7.67E-04 |
| 30 | GO:0080117: secondary growth | 9.39E-04 |
| 31 | GO:0090391: granum assembly | 9.39E-04 |
| 32 | GO:1901527: abscisic acid-activated signaling pathway involved in stomatal movement | 9.39E-04 |
| 33 | GO:0080188: RNA-directed DNA methylation | 9.62E-04 |
| 34 | GO:0007276: gamete generation | 1.34E-03 |
| 35 | GO:0043481: anthocyanin accumulation in tissues in response to UV light | 1.34E-03 |
| 36 | GO:0003333: amino acid transmembrane transport | 1.43E-03 |
| 37 | GO:2000038: regulation of stomatal complex development | 1.79E-03 |
| 38 | GO:0006808: regulation of nitrogen utilization | 1.79E-03 |
| 39 | GO:0048629: trichome patterning | 1.79E-03 |
| 40 | GO:1900864: mitochondrial RNA modification | 1.79E-03 |
| 41 | GO:0006284: base-excision repair | 1.84E-03 |
| 42 | GO:0006364: rRNA processing | 1.84E-03 |
| 43 | GO:0010087: phloem or xylem histogenesis | 2.16E-03 |
| 44 | GO:0030308: negative regulation of cell growth | 2.29E-03 |
| 45 | GO:0016120: carotene biosynthetic process | 2.29E-03 |
| 46 | GO:0080110: sporopollenin biosynthetic process | 2.29E-03 |
| 47 | GO:0016131: brassinosteroid metabolic process | 2.29E-03 |
| 48 | GO:0016123: xanthophyll biosynthetic process | 2.29E-03 |
| 49 | GO:0032876: negative regulation of DNA endoreduplication | 2.29E-03 |
| 50 | GO:0009740: gibberellic acid mediated signaling pathway | 2.67E-03 |
| 51 | GO:0016554: cytidine to uridine editing | 2.82E-03 |
| 52 | GO:0009913: epidermal cell differentiation | 2.82E-03 |
| 53 | GO:0048831: regulation of shoot system development | 2.82E-03 |
| 54 | GO:0003006: developmental process involved in reproduction | 2.82E-03 |
| 55 | GO:0009643: photosynthetic acclimation | 2.82E-03 |
| 56 | GO:0009416: response to light stimulus | 3.38E-03 |
| 57 | GO:2000033: regulation of seed dormancy process | 3.40E-03 |
| 58 | GO:0048509: regulation of meristem development | 3.40E-03 |
| 59 | GO:2000037: regulation of stomatal complex patterning | 3.40E-03 |
| 60 | GO:0000079: regulation of cyclin-dependent protein serine/threonine kinase activity | 3.40E-03 |
| 61 | GO:0010310: regulation of hydrogen peroxide metabolic process | 3.40E-03 |
| 62 | GO:0010098: suspensor development | 4.00E-03 |
| 63 | GO:0010103: stomatal complex morphogenesis | 4.00E-03 |
| 64 | GO:0009864: induced systemic resistance, jasmonic acid mediated signaling pathway | 4.00E-03 |
| 65 | GO:0006401: RNA catabolic process | 4.00E-03 |
| 66 | GO:0010374: stomatal complex development | 4.00E-03 |
| 67 | GO:0010029: regulation of seed germination | 4.37E-03 |
| 68 | GO:0009733: response to auxin | 4.43E-03 |
| 69 | GO:0009787: regulation of abscisic acid-activated signaling pathway | 4.65E-03 |
| 70 | GO:0009642: response to light intensity | 4.65E-03 |
| 71 | GO:0046620: regulation of organ growth | 4.65E-03 |
| 72 | GO:0009938: negative regulation of gibberellic acid mediated signaling pathway | 4.65E-03 |
| 73 | GO:0006402: mRNA catabolic process | 4.65E-03 |
| 74 | GO:0010492: maintenance of shoot apical meristem identity | 4.65E-03 |
| 75 | GO:0009827: plant-type cell wall modification | 5.32E-03 |
| 76 | GO:0007186: G-protein coupled receptor signaling pathway | 5.32E-03 |
| 77 | GO:0010233: phloem transport | 5.32E-03 |
| 78 | GO:0010052: guard cell differentiation | 5.32E-03 |
| 79 | GO:0032544: plastid translation | 5.32E-03 |
| 80 | GO:0044030: regulation of DNA methylation | 5.32E-03 |
| 81 | GO:0009245: lipid A biosynthetic process | 6.03E-03 |
| 82 | GO:0048507: meristem development | 6.03E-03 |
| 83 | GO:0000373: Group II intron splicing | 6.03E-03 |
| 84 | GO:0048589: developmental growth | 6.03E-03 |
| 85 | GO:0006607: NLS-bearing protein import into nucleus | 6.03E-03 |
| 86 | GO:0006865: amino acid transport | 6.53E-03 |
| 87 | GO:0009739: response to gibberellin | 6.67E-03 |
| 88 | GO:0006351: transcription, DNA-templated | 6.72E-03 |
| 89 | GO:1900865: chloroplast RNA modification | 6.77E-03 |
| 90 | GO:0031425: chloroplast RNA processing | 6.77E-03 |
| 91 | GO:0009867: jasmonic acid mediated signaling pathway | 6.83E-03 |
| 92 | GO:0006535: cysteine biosynthetic process from serine | 7.54E-03 |
| 93 | GO:0006949: syncytium formation | 7.54E-03 |
| 94 | GO:0009682: induced systemic resistance | 8.35E-03 |
| 95 | GO:0009750: response to fructose | 8.35E-03 |
| 96 | GO:0048765: root hair cell differentiation | 8.35E-03 |
| 97 | GO:0009734: auxin-activated signaling pathway | 8.89E-03 |
| 98 | GO:0010582: floral meristem determinacy | 9.17E-03 |
| 99 | GO:0010152: pollen maturation | 9.17E-03 |
| 100 | GO:0008361: regulation of cell size | 9.17E-03 |
| 101 | GO:0010102: lateral root morphogenesis | 1.00E-02 |
| 102 | GO:0006355: regulation of transcription, DNA-templated | 1.07E-02 |
| 103 | GO:0010020: chloroplast fission | 1.09E-02 |
| 104 | GO:0009887: animal organ morphogenesis | 1.09E-02 |
| 105 | GO:0048467: gynoecium development | 1.09E-02 |
| 106 | GO:0009863: salicylic acid mediated signaling pathway | 1.38E-02 |
| 107 | GO:0010187: negative regulation of seed germination | 1.38E-02 |
| 108 | GO:0080147: root hair cell development | 1.38E-02 |
| 109 | GO:2000377: regulation of reactive oxygen species metabolic process | 1.38E-02 |
| 110 | GO:0019344: cysteine biosynthetic process | 1.38E-02 |
| 111 | GO:0048367: shoot system development | 1.46E-02 |
| 112 | GO:0006874: cellular calcium ion homeostasis | 1.48E-02 |
| 113 | GO:2000022: regulation of jasmonic acid mediated signaling pathway | 1.68E-02 |
| 114 | GO:0045892: negative regulation of transcription, DNA-templated | 1.70E-02 |
| 115 | GO:0009831: plant-type cell wall modification involved in multidimensional cell growth | 1.79E-02 |
| 116 | GO:0071215: cellular response to abscisic acid stimulus | 1.79E-02 |
| 117 | GO:0009686: gibberellin biosynthetic process | 1.79E-02 |
| 118 | GO:0048443: stamen development | 1.90E-02 |
| 119 | GO:0042127: regulation of cell proliferation | 1.90E-02 |
| 120 | GO:0010584: pollen exine formation | 1.90E-02 |
| 121 | GO:0070417: cellular response to cold | 2.01E-02 |
| 122 | GO:0051028: mRNA transport | 2.01E-02 |
| 123 | GO:0032259: methylation | 2.06E-02 |
| 124 | GO:0016042: lipid catabolic process | 2.09E-02 |
| 125 | GO:0042335: cuticle development | 2.13E-02 |
| 126 | GO:0080022: primary root development | 2.13E-02 |
| 127 | GO:0008033: tRNA processing | 2.13E-02 |
| 128 | GO:0010501: RNA secondary structure unwinding | 2.13E-02 |
| 129 | GO:0010118: stomatal movement | 2.13E-02 |
| 130 | GO:0042631: cellular response to water deprivation | 2.13E-02 |
| 131 | GO:0010305: leaf vascular tissue pattern formation | 2.24E-02 |
| 132 | GO:0009741: response to brassinosteroid | 2.24E-02 |
| 133 | GO:0010268: brassinosteroid homeostasis | 2.24E-02 |
| 134 | GO:0006397: mRNA processing | 2.29E-02 |
| 135 | GO:0009845: seed germination | 2.31E-02 |
| 136 | GO:0048544: recognition of pollen | 2.36E-02 |
| 137 | GO:0007018: microtubule-based movement | 2.36E-02 |
| 138 | GO:0048825: cotyledon development | 2.48E-02 |
| 139 | GO:0009749: response to glucose | 2.48E-02 |
| 140 | GO:0080156: mitochondrial mRNA modification | 2.61E-02 |
| 141 | GO:0002229: defense response to oomycetes | 2.61E-02 |
| 142 | GO:0010583: response to cyclopentenone | 2.73E-02 |
| 143 | GO:0032502: developmental process | 2.73E-02 |
| 144 | GO:0010090: trichome morphogenesis | 2.86E-02 |
| 145 | GO:0045490: pectin catabolic process | 2.94E-02 |
| 146 | GO:0019760: glucosinolate metabolic process | 2.99E-02 |
| 147 | GO:0009639: response to red or far red light | 2.99E-02 |
| 148 | GO:0009828: plant-type cell wall loosening | 2.99E-02 |
| 149 | GO:0010027: thylakoid membrane organization | 3.39E-02 |
| 150 | GO:0009414: response to water deprivation | 3.47E-02 |
| 151 | GO:0008380: RNA splicing | 3.51E-02 |
| 152 | GO:0015995: chlorophyll biosynthetic process | 3.80E-02 |
| 153 | GO:0016311: dephosphorylation | 3.95E-02 |
| 154 | GO:0048481: plant ovule development | 4.09E-02 |
| 155 | GO:0000160: phosphorelay signal transduction system | 4.24E-02 |
| 156 | GO:0006811: ion transport | 4.38E-02 |
| 157 | GO:0010218: response to far red light | 4.38E-02 |
| 158 | GO:0009793: embryo development ending in seed dormancy | 4.73E-02 |
| 159 | GO:0006970: response to osmotic stress | 4.88E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0004808: tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity | 0.00E+00 |
| 2 | GO:0008725: DNA-3-methyladenine glycosylase activity | 7.43E-05 |
| 3 | GO:0003723: RNA binding | 1.72E-04 |
| 4 | GO:0016422: mRNA (2'-O-methyladenosine-N6-)-methyltransferase activity | 2.63E-04 |
| 5 | GO:0008395: steroid hydroxylase activity | 2.63E-04 |
| 6 | GO:0016901: oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor | 2.63E-04 |
| 7 | GO:0004654: polyribonucleotide nucleotidyltransferase activity | 2.63E-04 |
| 8 | GO:0004016: adenylate cyclase activity | 2.63E-04 |
| 9 | GO:0000179: rRNA (adenine-N6,N6-)-dimethyltransferase activity | 5.78E-04 |
| 10 | GO:0009884: cytokinin receptor activity | 5.78E-04 |
| 11 | GO:0003725: double-stranded RNA binding | 7.67E-04 |
| 12 | GO:0005034: osmosensor activity | 9.39E-04 |
| 13 | GO:0016707: gibberellin 3-beta-dioxygenase activity | 9.39E-04 |
| 14 | GO:0030570: pectate lyase activity | 1.70E-03 |
| 15 | GO:0010328: auxin influx transmembrane transporter activity | 1.79E-03 |
| 16 | GO:0010385: double-stranded methylated DNA binding | 1.79E-03 |
| 17 | GO:0004930: G-protein coupled receptor activity | 1.79E-03 |
| 18 | GO:0010011: auxin binding | 1.79E-03 |
| 19 | GO:0003727: single-stranded RNA binding | 1.84E-03 |
| 20 | GO:0003690: double-stranded DNA binding | 1.92E-03 |
| 21 | GO:0031177: phosphopantetheine binding | 2.82E-03 |
| 22 | GO:0003700: transcription factor activity, sequence-specific DNA binding | 3.20E-03 |
| 23 | GO:0000035: acyl binding | 3.40E-03 |
| 24 | GO:0019900: kinase binding | 3.40E-03 |
| 25 | GO:0004124: cysteine synthase activity | 3.40E-03 |
| 26 | GO:0019843: rRNA binding | 3.84E-03 |
| 27 | GO:0000036: ACP phosphopantetheine attachment site binding involved in fatty acid biosynthetic process | 4.65E-03 |
| 28 | GO:0017056: structural constituent of nuclear pore | 4.65E-03 |
| 29 | GO:0043565: sequence-specific DNA binding | 5.76E-03 |
| 30 | GO:0000989: transcription factor activity, transcription factor binding | 6.03E-03 |
| 31 | GO:0005487: nucleocytoplasmic transporter activity | 6.77E-03 |
| 32 | GO:0003697: single-stranded DNA binding | 6.83E-03 |
| 33 | GO:0003993: acid phosphatase activity | 7.15E-03 |
| 34 | GO:0004673: protein histidine kinase activity | 7.54E-03 |
| 35 | GO:0043621: protein self-association | 9.55E-03 |
| 36 | GO:0008168: methyltransferase activity | 9.61E-03 |
| 37 | GO:0015293: symporter activity | 9.92E-03 |
| 38 | GO:0000175: 3'-5'-exoribonuclease activity | 1.00E-02 |
| 39 | GO:0000155: phosphorelay sensor kinase activity | 1.00E-02 |
| 40 | GO:0016788: hydrolase activity, acting on ester bonds | 1.03E-02 |
| 41 | GO:0003677: DNA binding | 1.12E-02 |
| 42 | GO:0005217: intracellular ligand-gated ion channel activity | 1.18E-02 |
| 43 | GO:0004970: ionotropic glutamate receptor activity | 1.18E-02 |
| 44 | GO:0015171: amino acid transmembrane transporter activity | 1.32E-02 |
| 45 | GO:0008134: transcription factor binding | 1.38E-02 |
| 46 | GO:0043424: protein histidine kinase binding | 1.48E-02 |
| 47 | GO:0052689: carboxylic ester hydrolase activity | 1.51E-02 |
| 48 | GO:0003779: actin binding | 1.65E-02 |
| 49 | GO:0004871: signal transducer activity | 1.77E-02 |
| 50 | GO:0042803: protein homodimerization activity | 1.77E-02 |
| 51 | GO:0004402: histone acetyltransferase activity | 2.13E-02 |
| 52 | GO:0010181: FMN binding | 2.36E-02 |
| 53 | GO:0050662: coenzyme binding | 2.36E-02 |
| 54 | GO:0004519: endonuclease activity | 2.41E-02 |
| 55 | GO:0000977: RNA polymerase II regulatory region sequence-specific DNA binding | 2.43E-02 |
| 56 | GO:0019901: protein kinase binding | 2.48E-02 |
| 57 | GO:0048038: quinone binding | 2.61E-02 |
| 58 | GO:0005200: structural constituent of cytoskeleton | 3.12E-02 |
| 59 | GO:0008289: lipid binding | 3.28E-02 |
| 60 | GO:0004004: ATP-dependent RNA helicase activity | 3.80E-02 |
| 61 | GO:0004693: cyclin-dependent protein serine/threonine kinase activity | 4.38E-02 |