co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT4G29905

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:2000469: negative regulation of peroxidase activity	0.00E+00
2	GO:0090706: specification of plant organ position	0.00E+00
3	GO:0033494: ferulate metabolic process	0.00E+00
4	GO:2000121: regulation of removal of superoxide radicals	0.00E+00
5	GO:0031054: pre-miRNA processing	0.00E+00
6	GO:0090697: post-embryonic plant organ morphogenesis	0.00E+00
7	GO:2001294: malonyl-CoA catabolic process	0.00E+00
8	GO:1903508: positive regulation of nucleic acid-templated transcription	0.00E+00
9	GO:0009647: skotomorphogenesis	3.17E-05
10	GO:0006021: inositol biosynthetic process	5.68E-05
11	GO:0010143: cutin biosynthetic process	6.35E-05
12	GO:1902183: regulation of shoot apical meristem development	8.98E-05
13	GO:0010158: abaxial cell fate specification	8.98E-05
14	GO:0045038: protein import into chloroplast thylakoid membrane	8.98E-05
15	GO:0048527: lateral root development	1.18E-04
16	GO:0046167: glycerol-3-phosphate biosynthetic process	2.94E-04
17	GO:1902458: positive regulation of stomatal opening	2.94E-04
18	GO:0034337: RNA folding	2.94E-04
19	GO:0010450: inflorescence meristem growth	2.94E-04
20	GO:0051171: regulation of nitrogen compound metabolic process	2.94E-04
21	GO:0010362: negative regulation of anion channel activity by blue light	2.94E-04
22	GO:0015969: guanosine tetraphosphate metabolic process	2.94E-04
23	GO:0031426: polycistronic mRNA processing	2.94E-04
24	GO:0000481: maturation of 5S rRNA	2.94E-04
25	GO:0006659: phosphatidylserine biosynthetic process	2.94E-04
26	GO:0010583: response to cyclopentenone	4.09E-04
27	GO:2000024: regulation of leaf development	4.36E-04
28	GO:0009641: shade avoidance	6.02E-04
29	GO:0010155: regulation of proton transport	6.45E-04
30	GO:1903426: regulation of reactive oxygen species biosynthetic process	6.45E-04
31	GO:0006650: glycerophospholipid metabolic process	6.45E-04
32	GO:0030187: melatonin biosynthetic process	6.45E-04
33	GO:0010541: acropetal auxin transport	6.45E-04
34	GO:0044550: secondary metabolite biosynthetic process	9.67E-04
35	GO:0045165: cell fate commitment	1.04E-03
36	GO:0046168: glycerol-3-phosphate catabolic process	1.04E-03
37	GO:0009405: pathogenesis	1.04E-03
38	GO:0010589: leaf proximal/distal pattern formation	1.04E-03
39	GO:0010160: formation of animal organ boundary	1.04E-03
40	GO:0006753: nucleoside phosphate metabolic process	1.04E-03
41	GO:0080055: low-affinity nitrate transport	1.04E-03
42	GO:0009637: response to blue light	1.13E-03
43	GO:0009416: response to light stimulus	1.21E-03
44	GO:0042753: positive regulation of circadian rhythm	1.25E-03
45	GO:0009944: polarity specification of adaxial/abaxial axis	1.39E-03
46	GO:0006166: purine ribonucleoside salvage	1.50E-03
47	GO:0010239: chloroplast mRNA processing	1.50E-03
48	GO:0043481: anthocyanin accumulation in tissues in response to UV light	1.50E-03
49	GO:0006072: glycerol-3-phosphate metabolic process	1.50E-03
50	GO:0006164: purine nucleotide biosynthetic process	1.50E-03
51	GO:0009963: positive regulation of flavonoid biosynthetic process	1.50E-03
52	GO:0010255: glucose mediated signaling pathway	1.50E-03
53	GO:1990019: protein storage vacuole organization	1.50E-03
54	GO:0046739: transport of virus in multicellular host	1.50E-03
55	GO:0006168: adenine salvage	1.50E-03
56	GO:0009640: photomorphogenesis	1.56E-03
57	GO:0048442: sepal development	2.01E-03
58	GO:2000306: positive regulation of photomorphogenesis	2.01E-03
59	GO:0035279: mRNA cleavage involved in gene silencing by miRNA	2.01E-03
60	GO:0009649: entrainment of circadian clock	2.01E-03
61	GO:0008295: spermidine biosynthetic process	2.01E-03
62	GO:0032366: intracellular sterol transport	2.01E-03
63	GO:0048443: stamen development	2.17E-03
64	GO:0009585: red, far-red light phototransduction	2.27E-03
65	GO:0044209: AMP salvage	2.56E-03
66	GO:0006665: sphingolipid metabolic process	2.56E-03
67	GO:0034052: positive regulation of plant-type hypersensitive response	2.56E-03
68	GO:0046283: anthocyanin-containing compound metabolic process	2.56E-03
69	GO:0009904: chloroplast accumulation movement	2.56E-03
70	GO:0010236: plastoquinone biosynthetic process	2.56E-03
71	GO:0009958: positive gravitropism	2.74E-03
72	GO:0010154: fruit development	2.74E-03
73	GO:0007018: microtubule-based movement	2.94E-03
74	GO:0006751: glutathione catabolic process	3.16E-03
75	GO:0010264: myo-inositol hexakisphosphate biosynthetic process	3.16E-03
76	GO:0045962: positive regulation of development, heterochronic	3.16E-03
77	GO:0009791: post-embryonic development	3.16E-03
78	GO:0060918: auxin transport	3.16E-03
79	GO:0000741: karyogamy	3.16E-03
80	GO:0046855: inositol phosphate dephosphorylation	3.16E-03
81	GO:0008654: phospholipid biosynthetic process	3.16E-03
82	GO:0000079: regulation of cyclin-dependent protein serine/threonine kinase activity	3.81E-03
83	GO:0009648: photoperiodism	3.81E-03
84	GO:0010076: maintenance of floral meristem identity	3.81E-03
85	GO:0048280: vesicle fusion with Golgi apparatus	3.81E-03
86	GO:0009903: chloroplast avoidance movement	3.81E-03
87	GO:0009639: response to red or far red light	4.09E-03
88	GO:0015937: coenzyme A biosynthetic process	4.49E-03
89	GO:0000122: negative regulation of transcription from RNA polymerase II promoter	4.49E-03
90	GO:0006400: tRNA modification	4.49E-03
91	GO:0030307: positive regulation of cell growth	4.49E-03
92	GO:0035196: production of miRNAs involved in gene silencing by miRNA	4.49E-03
93	GO:0016559: peroxisome fission	5.21E-03
94	GO:0007155: cell adhesion	5.21E-03
95	GO:0043068: positive regulation of programmed cell death	5.21E-03
96	GO:0010078: maintenance of root meristem identity	5.21E-03
97	GO:0032508: DNA duplex unwinding	5.21E-03
98	GO:2000070: regulation of response to water deprivation	5.21E-03
99	GO:0015995: chlorophyll biosynthetic process	5.75E-03
100	GO:0010093: specification of floral organ identity	5.98E-03
101	GO:0009932: cell tip growth	5.98E-03
102	GO:0015996: chlorophyll catabolic process	5.98E-03
103	GO:0007186: G-protein coupled receptor signaling pathway	5.98E-03
104	GO:0043562: cellular response to nitrogen levels	5.98E-03
105	GO:0048507: meristem development	6.77E-03
106	GO:0006189: 'de novo' IMP biosynthetic process	6.77E-03
107	GO:0006811: ion transport	7.03E-03
108	GO:0007623: circadian rhythm	7.15E-03
109	GO:0010119: regulation of stomatal movement	7.37E-03
110	GO:0009638: phototropism	7.60E-03
111	GO:0010018: far-red light signaling pathway	7.60E-03
112	GO:0010267: production of ta-siRNAs involved in RNA interference	7.60E-03
113	GO:0048354: mucilage biosynthetic process involved in seed coat development	7.60E-03
114	GO:0010380: regulation of chlorophyll biosynthetic process	7.60E-03
115	GO:0010192: mucilage biosynthetic process	8.48E-03
116	GO:0006896: Golgi to vacuole transport	8.48E-03
117	GO:0048441: petal development	8.48E-03
118	GO:0043069: negative regulation of programmed cell death	8.48E-03
119	GO:0055114: oxidation-reduction process	9.20E-03
120	GO:0009684: indoleacetic acid biosynthetic process	9.38E-03
121	GO:0000038: very long-chain fatty acid metabolic process	9.38E-03
122	GO:0006631: fatty acid metabolic process	9.61E-03
123	GO:0008361: regulation of cell size	1.03E-02
124	GO:0006790: sulfur compound metabolic process	1.03E-02
125	GO:0016024: CDP-diacylglycerol biosynthetic process	1.03E-02
126	GO:0045037: protein import into chloroplast stroma	1.03E-02
127	GO:0009718: anthocyanin-containing compound biosynthetic process	1.13E-02
128	GO:0009767: photosynthetic electron transport chain	1.13E-02
129	GO:0010588: cotyledon vascular tissue pattern formation	1.13E-02
130	GO:0030048: actin filament-based movement	1.13E-02
131	GO:0009785: blue light signaling pathway	1.13E-02
132	GO:0030036: actin cytoskeleton organization	1.13E-02
133	GO:0009887: animal organ morphogenesis	1.23E-02
134	GO:0010540: basipetal auxin transport	1.23E-02
135	GO:0048467: gynoecium development	1.23E-02
136	GO:0048440: carpel development	1.23E-02
137	GO:0006541: glutamine metabolic process	1.23E-02
138	GO:0010020: chloroplast fission	1.23E-02
139	GO:0010207: photosystem II assembly	1.23E-02
140	GO:0009933: meristem structural organization	1.23E-02
141	GO:0010223: secondary shoot formation	1.23E-02
142	GO:0042343: indole glucosinolate metabolic process	1.33E-02
143	GO:0019853: L-ascorbic acid biosynthetic process	1.33E-02
144	GO:0046854: phosphatidylinositol phosphorylation	1.33E-02
145	GO:0000162: tryptophan biosynthetic process	1.44E-02
146	GO:0010025: wax biosynthetic process	1.44E-02
147	GO:0009723: response to ethylene	1.50E-02
148	GO:0006857: oligopeptide transport	1.51E-02
149	GO:0000027: ribosomal large subunit assembly	1.55E-02
150	GO:0010187: negative regulation of seed germination	1.55E-02
151	GO:0009909: regulation of flower development	1.56E-02
152	GO:0007017: microtubule-based process	1.66E-02
153	GO:0048511: rhythmic process	1.78E-02
154	GO:0098542: defense response to other organism	1.78E-02
155	GO:0019915: lipid storage	1.78E-02
156	GO:0048278: vesicle docking	1.78E-02
157	GO:0019748: secondary metabolic process	1.90E-02
158	GO:0009814: defense response, incompatible interaction	1.90E-02
159	GO:0035428: hexose transmembrane transport	1.90E-02
160	GO:0071215: cellular response to abscisic acid stimulus	2.02E-02
161	GO:0009294: DNA mediated transformation	2.02E-02
162	GO:0071369: cellular response to ethylene stimulus	2.02E-02
163	GO:0019722: calcium-mediated signaling	2.14E-02
164	GO:0042147: retrograde transport, endosome to Golgi	2.27E-02
165	GO:0080022: primary root development	2.40E-02
166	GO:0010087: phloem or xylem histogenesis	2.40E-02
167	GO:0046323: glucose import	2.53E-02
168	GO:0045489: pectin biosynthetic process	2.53E-02
169	GO:0006520: cellular amino acid metabolic process	2.53E-02
170	GO:0010305: leaf vascular tissue pattern formation	2.53E-02
171	GO:0010197: polar nucleus fusion	2.53E-02
172	GO:0010182: sugar mediated signaling pathway	2.53E-02
173	GO:0061025: membrane fusion	2.66E-02
174	GO:0009646: response to absence of light	2.66E-02
175	GO:0009851: auxin biosynthetic process	2.80E-02
176	GO:0006623: protein targeting to vacuole	2.80E-02
177	GO:0010183: pollen tube guidance	2.80E-02
178	GO:0048825: cotyledon development	2.80E-02
179	GO:0048510: regulation of timing of transition from vegetative to reproductive phase	2.94E-02
180	GO:0006891: intra-Golgi vesicle-mediated transport	2.94E-02
181	GO:0007264: small GTPase mediated signal transduction	3.08E-02
182	GO:0016032: viral process	3.08E-02
183	GO:0006633: fatty acid biosynthetic process	3.17E-02
184	GO:0016125: sterol metabolic process	3.37E-02
185	GO:0010252: auxin homeostasis	3.37E-02
186	GO:0007267: cell-cell signaling	3.51E-02
187	GO:0010027: thylakoid membrane organization	3.82E-02
188	GO:0006906: vesicle fusion	4.13E-02
189	GO:0010468: regulation of gene expression	4.14E-02
190	GO:0009617: response to bacterium	4.14E-02
191	GO:0006888: ER to Golgi vesicle-mediated transport	4.29E-02
192	GO:0048573: photoperiodism, flowering	4.29E-02
193	GO:0016311: dephosphorylation	4.44E-02
194	GO:0030244: cellulose biosynthetic process	4.61E-02
195	GO:0018298: protein-chromophore linkage	4.61E-02
196	GO:0000160: phosphorelay signal transduction system	4.77E-02
197	GO:0010311: lateral root formation	4.77E-02
198	GO:0006499: N-terminal protein myristoylation	4.94E-02
199	GO:0009407: toxin catabolic process	4.94E-02
200	GO:0010218: response to far red light	4.94E-02

Rank	GO Term	Adjusted P value
1	GO:1990534: thermospermine oxidase activity	0.00E+00
2	GO:0036033: mediator complex binding	0.00E+00
3	GO:0004740: pyruvate dehydrogenase (acetyl-transferring) kinase activity	0.00E+00
4	GO:0004059: aralkylamine N-acetyltransferase activity	0.00E+00
5	GO:0036361: racemase activity, acting on amino acids and derivatives	0.00E+00
6	GO:0004639: phosphoribosylaminoimidazolesuccinocarboxamide synthase activity	0.00E+00
7	GO:0016855: racemase and epimerase activity, acting on amino acids and derivatives	0.00E+00
8	GO:0000293: ferric-chelate reductase activity	1.30E-04
9	GO:0010347: L-galactose-1-phosphate phosphatase activity	2.94E-04
10	GO:0047259: glucomannan 4-beta-mannosyltransferase activity	2.94E-04
11	GO:0080132: fatty acid alpha-hydroxylase activity	2.94E-04
12	GO:0010945: CoA pyrophosphatase activity	2.94E-04
13	GO:0031957: very long-chain fatty acid-CoA ligase activity	2.94E-04
14	GO:0004328: formamidase activity	2.94E-04
15	GO:0003839: gamma-glutamylcyclotransferase activity	6.45E-04
16	GO:0050362: L-tryptophan:2-oxoglutarate aminotransferase activity	6.45E-04
17	GO:0004766: spermidine synthase activity	6.45E-04
18	GO:0052832: inositol monophosphate 3-phosphatase activity	6.45E-04
19	GO:0034432: bis(5'-adenosyl)-pentaphosphatase activity	6.45E-04
20	GO:0008934: inositol monophosphate 1-phosphatase activity	6.45E-04
21	GO:0052833: inositol monophosphate 4-phosphatase activity	6.45E-04
22	GO:0080097: L-tryptophan:pyruvate aminotransferase activity	6.45E-04
23	GO:0016630: protochlorophyllide reductase activity	6.45E-04
24	GO:0015929: hexosaminidase activity	6.45E-04
25	GO:0004563: beta-N-acetylhexosaminidase activity	6.45E-04
26	GO:0004081: bis(5'-nucleosyl)-tetraphosphatase (asymmetrical) activity	6.45E-04
27	GO:0004512: inositol-3-phosphate synthase activity	6.45E-04
28	GO:0048531: beta-1,3-galactosyltransferase activity	6.45E-04
29	GO:0008728: GTP diphosphokinase activity	6.45E-04
30	GO:0004049: anthranilate synthase activity	1.04E-03
31	GO:0080054: low-affinity nitrate transmembrane transporter activity	1.04E-03
32	GO:0050734: hydroxycinnamoyltransferase activity	1.04E-03
33	GO:0003913: DNA photolyase activity	1.04E-03
34	GO:0004148: dihydrolipoyl dehydrogenase activity	1.04E-03
35	GO:0004367: glycerol-3-phosphate dehydrogenase [NAD+] activity	1.04E-03
36	GO:0016709: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen	1.31E-03
37	GO:0005506: iron ion binding	1.45E-03
38	GO:0008017: microtubule binding	1.49E-03
39	GO:0035198: miRNA binding	1.50E-03
40	GO:0048027: mRNA 5'-UTR binding	1.50E-03
41	GO:0003999: adenine phosphoribosyltransferase activity	1.50E-03
42	GO:0008893: guanosine-3',5'-bis(diphosphate) 3'-diphosphatase activity	1.50E-03
43	GO:0016811: hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides	1.50E-03
44	GO:0009882: blue light photoreceptor activity	1.50E-03
45	GO:0042802: identical protein binding	2.01E-03
46	GO:0019825: oxygen binding	2.45E-03
47	GO:0016846: carbon-sulfur lyase activity	2.56E-03
48	GO:0070696: transmembrane receptor protein serine/threonine kinase binding	2.56E-03
49	GO:0003777: microtubule motor activity	2.59E-03
50	GO:0000210: NAD+ diphosphatase activity	3.16E-03
51	GO:0004366: glycerol-3-phosphate O-acyltransferase activity	3.16E-03
52	GO:0090447: glycerol-3-phosphate 2-O-acyltransferase activity	3.16E-03
53	GO:0016746: transferase activity, transferring acyl groups	3.70E-03
54	GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity	3.81E-03
55	GO:0102391: decanoate--CoA ligase activity	3.81E-03
56	GO:0051753: mannan synthase activity	3.81E-03
57	GO:0009927: histidine phosphotransfer kinase activity	3.81E-03
58	GO:0020037: heme binding	4.07E-03
59	GO:0016722: oxidoreductase activity, oxidizing metal ions	4.35E-03
60	GO:0004467: long-chain fatty acid-CoA ligase activity	4.49E-03
61	GO:0043022: ribosome binding	5.21E-03
62	GO:0047196: long-chain-alcohol O-fatty-acyltransferase activity	5.98E-03
63	GO:0103095: wax ester synthase activity	5.98E-03
64	GO:0016491: oxidoreductase activity	8.41E-03
65	GO:0003993: acid phosphatase activity	8.45E-03
66	GO:0000149: SNARE binding	8.83E-03
67	GO:0000976: transcription regulatory region sequence-specific DNA binding	1.03E-02
68	GO:0004185: serine-type carboxypeptidase activity	1.04E-02
69	GO:0005484: SNAP receptor activity	1.04E-02
70	GO:0000155: phosphorelay sensor kinase activity	1.13E-02
71	GO:0003725: double-stranded RNA binding	1.13E-02
72	GO:0010329: auxin efflux transmembrane transporter activity	1.13E-02
73	GO:0008081: phosphoric diester hydrolase activity	1.13E-02
74	GO:0003774: motor activity	1.23E-02
75	GO:0008131: primary amine oxidase activity	1.23E-02
76	GO:0008146: sulfotransferase activity	1.33E-02
77	GO:0016747: transferase activity, transferring acyl groups other than amino-acyl groups	1.72E-02
78	GO:0052689: carboxylic ester hydrolase activity	1.86E-02
79	GO:0030570: pectate lyase activity	2.02E-02
80	GO:0008080: N-acetyltransferase activity	2.53E-02
81	GO:0001085: RNA polymerase II transcription factor binding	2.53E-02
82	GO:0005355: glucose transmembrane transporter activity	2.66E-02
83	GO:0010181: FMN binding	2.66E-02
84	GO:0019901: protein kinase binding	2.80E-02
85	GO:0000977: RNA polymerase II regulatory region sequence-specific DNA binding	2.87E-02
86	GO:0016791: phosphatase activity	3.37E-02
87	GO:0005525: GTP binding	3.39E-02
88	GO:0005200: structural constituent of cytoskeleton	3.51E-02
89	GO:0004721: phosphoprotein phosphatase activity	4.29E-02
90	GO:0004693: cyclin-dependent protein serine/threonine kinase activity	4.94E-02