GO Enrichment Analysis of Co-expressed Genes with
AT4G29720
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0015739: sialic acid transport | 0.00E+00 |
| 2 | GO:0010412: mannan metabolic process | 0.00E+00 |
| 3 | GO:0071311: cellular response to acetate | 0.00E+00 |
| 4 | GO:0071260: cellular response to mechanical stimulus | 0.00E+00 |
| 5 | GO:0061157: mRNA destabilization | 0.00E+00 |
| 6 | GO:0090706: specification of plant organ position | 0.00E+00 |
| 7 | GO:2000121: regulation of removal of superoxide radicals | 0.00E+00 |
| 8 | GO:0045176: apical protein localization | 0.00E+00 |
| 9 | GO:2001294: malonyl-CoA catabolic process | 0.00E+00 |
| 10 | GO:0006168: adenine salvage | 2.67E-05 |
| 11 | GO:0006166: purine ribonucleoside salvage | 2.67E-05 |
| 12 | GO:0006021: inositol biosynthetic process | 4.83E-05 |
| 13 | GO:1902183: regulation of shoot apical meristem development | 7.68E-05 |
| 14 | GO:0044209: AMP salvage | 7.68E-05 |
| 15 | GO:0010158: abaxial cell fate specification | 7.68E-05 |
| 16 | GO:0007155: cell adhesion | 2.55E-04 |
| 17 | GO:0071028: nuclear mRNA surveillance | 2.68E-04 |
| 18 | GO:0006659: phosphatidylserine biosynthetic process | 2.68E-04 |
| 19 | GO:0006177: GMP biosynthetic process | 2.68E-04 |
| 20 | GO:0010450: inflorescence meristem growth | 2.68E-04 |
| 21 | GO:0051171: regulation of nitrogen compound metabolic process | 2.68E-04 |
| 22 | GO:2000024: regulation of leaf development | 3.80E-04 |
| 23 | GO:0007154: cell communication | 5.89E-04 |
| 24 | GO:0080064: 4,4-dimethyl-9beta,19-cyclopropylsterol oxidation | 5.89E-04 |
| 25 | GO:0031648: protein destabilization | 5.89E-04 |
| 26 | GO:0031125: rRNA 3'-end processing | 5.89E-04 |
| 27 | GO:0071051: polyadenylation-dependent snoRNA 3'-end processing | 5.89E-04 |
| 28 | GO:0034475: U4 snRNA 3'-end processing | 5.89E-04 |
| 29 | GO:0010115: regulation of abscisic acid biosynthetic process | 5.89E-04 |
| 30 | GO:1900871: chloroplast mRNA modification | 5.89E-04 |
| 31 | GO:0045165: cell fate commitment | 9.55E-04 |
| 32 | GO:0016075: rRNA catabolic process | 9.55E-04 |
| 33 | GO:0034427: nuclear-transcribed mRNA catabolic process, exonucleolytic, 3'-5' | 9.55E-04 |
| 34 | GO:0051127: positive regulation of actin nucleation | 9.55E-04 |
| 35 | GO:0009405: pathogenesis | 9.55E-04 |
| 36 | GO:0006753: nucleoside phosphate metabolic process | 9.55E-04 |
| 37 | GO:0071230: cellular response to amino acid stimulus | 9.55E-04 |
| 38 | GO:0009944: polarity specification of adaxial/abaxial axis | 1.21E-03 |
| 39 | GO:0010187: negative regulation of seed germination | 1.21E-03 |
| 40 | GO:0006164: purine nucleotide biosynthetic process | 1.36E-03 |
| 41 | GO:0010255: glucose mediated signaling pathway | 1.36E-03 |
| 42 | GO:2000022: regulation of jasmonic acid mediated signaling pathway | 1.60E-03 |
| 43 | GO:0009902: chloroplast relocation | 1.83E-03 |
| 44 | GO:0048442: sepal development | 1.83E-03 |
| 45 | GO:0051322: anaphase | 1.83E-03 |
| 46 | GO:0046355: mannan catabolic process | 1.83E-03 |
| 47 | GO:0045038: protein import into chloroplast thylakoid membrane | 2.33E-03 |
| 48 | GO:0034052: positive regulation of plant-type hypersensitive response | 2.33E-03 |
| 49 | GO:0006544: glycine metabolic process | 2.33E-03 |
| 50 | GO:0010182: sugar mediated signaling pathway | 2.39E-03 |
| 51 | GO:0010154: fruit development | 2.39E-03 |
| 52 | GO:0008654: phospholipid biosynthetic process | 2.75E-03 |
| 53 | GO:0048825: cotyledon development | 2.75E-03 |
| 54 | GO:0009740: gibberellic acid mediated signaling pathway | 2.76E-03 |
| 55 | GO:0009117: nucleotide metabolic process | 2.88E-03 |
| 56 | GO:0006561: proline biosynthetic process | 2.88E-03 |
| 57 | GO:0006563: L-serine metabolic process | 2.88E-03 |
| 58 | GO:0048827: phyllome development | 2.88E-03 |
| 59 | GO:0010264: myo-inositol hexakisphosphate biosynthetic process | 2.88E-03 |
| 60 | GO:0009959: negative gravitropism | 2.88E-03 |
| 61 | GO:0000741: karyogamy | 2.88E-03 |
| 62 | GO:0046855: inositol phosphate dephosphorylation | 2.88E-03 |
| 63 | GO:0010583: response to cyclopentenone | 3.14E-03 |
| 64 | GO:0048280: vesicle fusion with Golgi apparatus | 3.46E-03 |
| 65 | GO:0009099: valine biosynthetic process | 3.46E-03 |
| 66 | GO:0010189: vitamin E biosynthetic process | 3.46E-03 |
| 67 | GO:0009088: threonine biosynthetic process | 3.46E-03 |
| 68 | GO:0000079: regulation of cyclin-dependent protein serine/threonine kinase activity | 3.46E-03 |
| 69 | GO:0042372: phylloquinone biosynthetic process | 3.46E-03 |
| 70 | GO:0010076: maintenance of floral meristem identity | 3.46E-03 |
| 71 | GO:0009082: branched-chain amino acid biosynthetic process | 3.46E-03 |
| 72 | GO:0010161: red light signaling pathway | 4.08E-03 |
| 73 | GO:0015937: coenzyme A biosynthetic process | 4.08E-03 |
| 74 | GO:0010078: maintenance of root meristem identity | 4.73E-03 |
| 75 | GO:0043068: positive regulation of programmed cell death | 4.73E-03 |
| 76 | GO:0009097: isoleucine biosynthetic process | 5.42E-03 |
| 77 | GO:0010100: negative regulation of photomorphogenesis | 5.42E-03 |
| 78 | GO:0006997: nucleus organization | 5.42E-03 |
| 79 | GO:0043562: cellular response to nitrogen levels | 5.42E-03 |
| 80 | GO:0010093: specification of floral organ identity | 5.42E-03 |
| 81 | GO:0010099: regulation of photomorphogenesis | 5.42E-03 |
| 82 | GO:0006783: heme biosynthetic process | 6.14E-03 |
| 83 | GO:0006189: 'de novo' IMP biosynthetic process | 6.14E-03 |
| 84 | GO:0015780: nucleotide-sugar transport | 6.14E-03 |
| 85 | GO:0051865: protein autoubiquitination | 6.14E-03 |
| 86 | GO:0009638: phototropism | 6.90E-03 |
| 87 | GO:0009098: leucine biosynthetic process | 6.90E-03 |
| 88 | GO:0010018: far-red light signaling pathway | 6.90E-03 |
| 89 | GO:1900865: chloroplast RNA modification | 6.90E-03 |
| 90 | GO:0048354: mucilage biosynthetic process involved in seed coat development | 6.90E-03 |
| 91 | GO:0010380: regulation of chlorophyll biosynthetic process | 6.90E-03 |
| 92 | GO:0009688: abscisic acid biosynthetic process | 7.68E-03 |
| 93 | GO:0010192: mucilage biosynthetic process | 7.68E-03 |
| 94 | GO:0006896: Golgi to vacuole transport | 7.68E-03 |
| 95 | GO:0009299: mRNA transcription | 7.68E-03 |
| 96 | GO:0048441: petal development | 7.68E-03 |
| 97 | GO:0006535: cysteine biosynthetic process from serine | 7.68E-03 |
| 98 | GO:1903507: negative regulation of nucleic acid-templated transcription | 8.50E-03 |
| 99 | GO:0009750: response to fructose | 8.50E-03 |
| 100 | GO:0009684: indoleacetic acid biosynthetic process | 8.50E-03 |
| 101 | GO:0006816: calcium ion transport | 8.50E-03 |
| 102 | GO:0006790: sulfur compound metabolic process | 9.35E-03 |
| 103 | GO:0010229: inflorescence development | 1.02E-02 |
| 104 | GO:0030036: actin cytoskeleton organization | 1.02E-02 |
| 105 | GO:0009725: response to hormone | 1.02E-02 |
| 106 | GO:0010588: cotyledon vascular tissue pattern formation | 1.02E-02 |
| 107 | GO:0010540: basipetal auxin transport | 1.11E-02 |
| 108 | GO:0006302: double-strand break repair | 1.11E-02 |
| 109 | GO:0048467: gynoecium development | 1.11E-02 |
| 110 | GO:0048440: carpel development | 1.11E-02 |
| 111 | GO:0009933: meristem structural organization | 1.11E-02 |
| 112 | GO:0090351: seedling development | 1.21E-02 |
| 113 | GO:0010030: positive regulation of seed germination | 1.21E-02 |
| 114 | GO:0046854: phosphatidylinositol phosphorylation | 1.21E-02 |
| 115 | GO:0009825: multidimensional cell growth | 1.21E-02 |
| 116 | GO:0019853: L-ascorbic acid biosynthetic process | 1.21E-02 |
| 117 | GO:0009585: red, far-red light phototransduction | 1.22E-02 |
| 118 | GO:0042753: positive regulation of circadian rhythm | 1.30E-02 |
| 119 | GO:0009416: response to light stimulus | 1.31E-02 |
| 120 | GO:0005992: trehalose biosynthetic process | 1.40E-02 |
| 121 | GO:0019344: cysteine biosynthetic process | 1.40E-02 |
| 122 | GO:0000027: ribosomal large subunit assembly | 1.40E-02 |
| 123 | GO:0007010: cytoskeleton organization | 1.40E-02 |
| 124 | GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway | 1.43E-02 |
| 125 | GO:0048367: shoot system development | 1.50E-02 |
| 126 | GO:0006874: cellular calcium ion homeostasis | 1.50E-02 |
| 127 | GO:0007017: microtubule-based process | 1.50E-02 |
| 128 | GO:0051321: meiotic cell cycle | 1.61E-02 |
| 129 | GO:0009814: defense response, incompatible interaction | 1.71E-02 |
| 130 | GO:0035428: hexose transmembrane transport | 1.71E-02 |
| 131 | GO:0009686: gibberellin biosynthetic process | 1.82E-02 |
| 132 | GO:0009742: brassinosteroid mediated signaling pathway | 1.85E-02 |
| 133 | GO:0048443: stamen development | 1.94E-02 |
| 134 | GO:0019722: calcium-mediated signaling | 1.94E-02 |
| 135 | GO:0009789: positive regulation of abscisic acid-activated signaling pathway | 2.05E-02 |
| 136 | GO:0042147: retrograde transport, endosome to Golgi | 2.05E-02 |
| 137 | GO:0070417: cellular response to cold | 2.05E-02 |
| 138 | GO:0080022: primary root development | 2.17E-02 |
| 139 | GO:0034220: ion transmembrane transport | 2.17E-02 |
| 140 | GO:0010087: phloem or xylem histogenesis | 2.17E-02 |
| 141 | GO:0042631: cellular response to water deprivation | 2.17E-02 |
| 142 | GO:0010197: polar nucleus fusion | 2.29E-02 |
| 143 | GO:0046323: glucose import | 2.29E-02 |
| 144 | GO:0009958: positive gravitropism | 2.29E-02 |
| 145 | GO:0007018: microtubule-based movement | 2.41E-02 |
| 146 | GO:0009851: auxin biosynthetic process | 2.53E-02 |
| 147 | GO:0006623: protein targeting to vacuole | 2.53E-02 |
| 148 | GO:0009791: post-embryonic development | 2.53E-02 |
| 149 | GO:0006891: intra-Golgi vesicle-mediated transport | 2.65E-02 |
| 150 | GO:0071554: cell wall organization or biogenesis | 2.65E-02 |
| 151 | GO:1901657: glycosyl compound metabolic process | 2.91E-02 |
| 152 | GO:0045490: pectin catabolic process | 3.02E-02 |
| 153 | GO:0007623: circadian rhythm | 3.02E-02 |
| 154 | GO:0009639: response to red or far red light | 3.04E-02 |
| 155 | GO:0006464: cellular protein modification process | 3.04E-02 |
| 156 | GO:0000910: cytokinesis | 3.31E-02 |
| 157 | GO:0016126: sterol biosynthetic process | 3.45E-02 |
| 158 | GO:0009911: positive regulation of flower development | 3.45E-02 |
| 159 | GO:0010029: regulation of seed germination | 3.59E-02 |
| 160 | GO:0048573: photoperiodism, flowering | 3.88E-02 |
| 161 | GO:0015995: chlorophyll biosynthetic process | 3.88E-02 |
| 162 | GO:0006888: ER to Golgi vesicle-mediated transport | 3.88E-02 |
| 163 | GO:0009735: response to cytokinin | 4.09E-02 |
| 164 | GO:0030244: cellulose biosynthetic process | 4.17E-02 |
| 165 | GO:0000160: phosphorelay signal transduction system | 4.32E-02 |
| 166 | GO:0009733: response to auxin | 4.41E-02 |
| 167 | GO:0009826: unidimensional cell growth | 4.49E-02 |
| 168 | GO:0009910: negative regulation of flower development | 4.62E-02 |
| 169 | GO:0048527: lateral root development | 4.62E-02 |
| 170 | GO:0035556: intracellular signal transduction | 4.88E-02 |
| 171 | GO:0009853: photorespiration | 4.93E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0008756: o-succinylbenzoate-CoA ligase activity | 0.00E+00 |
| 2 | GO:0015276: ligand-gated ion channel activity | 0.00E+00 |
| 3 | GO:0005456: CMP-N-acetylneuraminate transmembrane transporter activity | 0.00E+00 |
| 4 | GO:0010301: xanthoxin dehydrogenase activity | 0.00E+00 |
| 5 | GO:0004639: phosphoribosylaminoimidazolesuccinocarboxamide synthase activity | 0.00E+00 |
| 6 | GO:0015136: sialic acid transmembrane transporter activity | 0.00E+00 |
| 7 | GO:0010276: phytol kinase activity | 0.00E+00 |
| 8 | GO:0003999: adenine phosphoribosyltransferase activity | 2.67E-05 |
| 9 | GO:0005338: nucleotide-sugar transmembrane transporter activity | 2.02E-04 |
| 10 | GO:0010347: L-galactose-1-phosphate phosphatase activity | 2.68E-04 |
| 11 | GO:0050139: nicotinate-N-glucosyltransferase activity | 2.68E-04 |
| 12 | GO:0008066: glutamate receptor activity | 2.68E-04 |
| 13 | GO:0010945: CoA pyrophosphatase activity | 2.68E-04 |
| 14 | GO:0004795: threonine synthase activity | 2.68E-04 |
| 15 | GO:0010313: phytochrome binding | 2.68E-04 |
| 16 | GO:0050017: L-3-cyanoalanine synthase activity | 5.89E-04 |
| 17 | GO:0017118: lipoyltransferase activity | 5.89E-04 |
| 18 | GO:0043425: bHLH transcription factor binding | 5.89E-04 |
| 19 | GO:0050362: L-tryptophan:2-oxoglutarate aminotransferase activity | 5.89E-04 |
| 20 | GO:0003938: IMP dehydrogenase activity | 5.89E-04 |
| 21 | GO:0052832: inositol monophosphate 3-phosphatase activity | 5.89E-04 |
| 22 | GO:0008934: inositol monophosphate 1-phosphatase activity | 5.89E-04 |
| 23 | GO:0052833: inositol monophosphate 4-phosphatase activity | 5.89E-04 |
| 24 | GO:0015929: hexosaminidase activity | 5.89E-04 |
| 25 | GO:0004563: beta-N-acetylhexosaminidase activity | 5.89E-04 |
| 26 | GO:0080097: L-tryptophan:pyruvate aminotransferase activity | 5.89E-04 |
| 27 | GO:0004512: inositol-3-phosphate synthase activity | 5.89E-04 |
| 28 | GO:0003913: DNA photolyase activity | 9.55E-04 |
| 29 | GO:0090729: toxin activity | 9.55E-04 |
| 30 | GO:0008017: microtubule binding | 1.21E-03 |
| 31 | GO:0052656: L-isoleucine transaminase activity | 1.36E-03 |
| 32 | GO:0052654: L-leucine transaminase activity | 1.36E-03 |
| 33 | GO:0052655: L-valine transaminase activity | 1.36E-03 |
| 34 | GO:0000254: C-4 methylsterol oxidase activity | 1.36E-03 |
| 35 | GO:0035529: NADH pyrophosphatase activity | 1.36E-03 |
| 36 | GO:0008893: guanosine-3',5'-bis(diphosphate) 3'-diphosphatase activity | 1.36E-03 |
| 37 | GO:0008408: 3'-5' exonuclease activity | 1.46E-03 |
| 38 | GO:0030570: pectate lyase activity | 1.74E-03 |
| 39 | GO:0016985: mannan endo-1,4-beta-mannosidase activity | 1.83E-03 |
| 40 | GO:0080032: methyl jasmonate esterase activity | 1.83E-03 |
| 41 | GO:0004084: branched-chain-amino-acid transaminase activity | 1.83E-03 |
| 42 | GO:0003777: microtubule motor activity | 2.17E-03 |
| 43 | GO:0016846: carbon-sulfur lyase activity | 2.33E-03 |
| 44 | GO:0004372: glycine hydroxymethyltransferase activity | 2.33E-03 |
| 45 | GO:0004605: phosphatidate cytidylyltransferase activity | 2.88E-03 |
| 46 | GO:0004709: MAP kinase kinase kinase activity | 2.88E-03 |
| 47 | GO:0000210: NAD+ diphosphatase activity | 2.88E-03 |
| 48 | GO:0016208: AMP binding | 2.88E-03 |
| 49 | GO:0016462: pyrophosphatase activity | 2.88E-03 |
| 50 | GO:0004124: cysteine synthase activity | 3.46E-03 |
| 51 | GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity | 3.46E-03 |
| 52 | GO:0004871: signal transducer activity | 4.30E-03 |
| 53 | GO:0030247: polysaccharide binding | 5.00E-03 |
| 54 | GO:0047196: long-chain-alcohol O-fatty-acyltransferase activity | 5.42E-03 |
| 55 | GO:0103095: wax ester synthase activity | 5.42E-03 |
| 56 | GO:0004805: trehalose-phosphatase activity | 7.68E-03 |
| 57 | GO:0004864: protein phosphatase inhibitor activity | 7.68E-03 |
| 58 | GO:0047372: acylglycerol lipase activity | 8.50E-03 |
| 59 | GO:0008794: arsenate reductase (glutaredoxin) activity | 8.50E-03 |
| 60 | GO:0005262: calcium channel activity | 1.02E-02 |
| 61 | GO:0000175: 3'-5'-exoribonuclease activity | 1.02E-02 |
| 62 | GO:0004022: alcohol dehydrogenase (NAD) activity | 1.02E-02 |
| 63 | GO:0042973: glucan endo-1,3-beta-D-glucosidase activity | 1.11E-02 |
| 64 | GO:0004970: ionotropic glutamate receptor activity | 1.21E-02 |
| 65 | GO:0008146: sulfotransferase activity | 1.21E-02 |
| 66 | GO:0005217: intracellular ligand-gated ion channel activity | 1.21E-02 |
| 67 | GO:0005528: FK506 binding | 1.40E-02 |
| 68 | GO:0003714: transcription corepressor activity | 1.40E-02 |
| 69 | GO:0019706: protein-cysteine S-palmitoyltransferase activity | 1.61E-02 |
| 70 | GO:0016746: transferase activity, transferring acyl groups | 1.80E-02 |
| 71 | GO:0003727: single-stranded RNA binding | 1.94E-02 |
| 72 | GO:0046872: metal ion binding | 1.95E-02 |
| 73 | GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen | 2.25E-02 |
| 74 | GO:0001085: RNA polymerase II transcription factor binding | 2.29E-02 |
| 75 | GO:0016829: lyase activity | 2.37E-02 |
| 76 | GO:0005355: glucose transmembrane transporter activity | 2.41E-02 |
| 77 | GO:0010181: FMN binding | 2.41E-02 |
| 78 | GO:0000977: RNA polymerase II regulatory region sequence-specific DNA binding | 2.49E-02 |
| 79 | GO:0019901: protein kinase binding | 2.53E-02 |
| 80 | GO:0004872: receptor activity | 2.53E-02 |
| 81 | GO:0000156: phosphorelay response regulator activity | 2.91E-02 |
| 82 | GO:0005351: sugar:proton symporter activity | 2.95E-02 |
| 83 | GO:0016722: oxidoreductase activity, oxidizing metal ions | 3.18E-02 |
| 84 | GO:0016413: O-acetyltransferase activity | 3.31E-02 |
| 85 | GO:0005515: protein binding | 3.58E-02 |
| 86 | GO:0005506: iron ion binding | 3.65E-02 |
| 87 | GO:0042802: identical protein binding | 3.83E-02 |
| 88 | GO:0102483: scopolin beta-glucosidase activity | 3.88E-02 |
| 89 | GO:0004721: phosphoprotein phosphatase activity | 3.88E-02 |
| 90 | GO:0003700: transcription factor activity, sequence-specific DNA binding | 3.94E-02 |
| 91 | GO:0003824: catalytic activity | 4.27E-02 |
| 92 | GO:0004693: cyclin-dependent protein serine/threonine kinase activity | 4.47E-02 |
| 93 | GO:0030145: manganese ion binding | 4.62E-02 |
| 94 | GO:0001228: transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding | 4.62E-02 |
| 95 | GO:0050897: cobalt ion binding | 4.62E-02 |