Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT4G29400

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0031116: positive regulation of microtubule polymerization0.00E+00
2GO:0006428: isoleucyl-tRNA aminoacylation0.00E+00
3GO:0042821: pyridoxal biosynthetic process0.00E+00
4GO:0042407: cristae formation0.00E+00
5GO:0042820: vitamin B6 catabolic process0.00E+00
6GO:0035970: peptidyl-threonine dephosphorylation0.00E+00
7GO:0042817: pyridoxal metabolic process0.00E+00
8GO:0009106: lipoate metabolic process0.00E+00
9GO:0090042: tubulin deacetylation0.00E+00
10GO:0006114: glycerol biosynthetic process0.00E+00
11GO:0018023: peptidyl-lysine trimethylation0.00E+00
12GO:0071474: cellular hyperosmotic response0.00E+00
13GO:0006429: leucyl-tRNA aminoacylation0.00E+00
14GO:0009249: protein lipoylation0.00E+00
15GO:0019685: photosynthesis, dark reaction0.00E+00
16GO:2000505: regulation of energy homeostasis0.00E+00
17GO:0002184: cytoplasmic translational termination0.00E+00
18GO:0017038: protein import0.00E+00
19GO:0070681: glutaminyl-tRNAGln biosynthesis via transamidation0.00E+00
20GO:0046460: neutral lipid biosynthetic process0.00E+00
21GO:0090470: shoot organ boundary specification0.00E+00
22GO:0090279: regulation of calcium ion import0.00E+00
23GO:0046838: phosphorylated carbohydrate dephosphorylation0.00E+00
24GO:0071482: cellular response to light stimulus8.42E-07
25GO:0032544: plastid translation4.11E-05
26GO:2001141: regulation of RNA biosynthetic process8.23E-05
27GO:0006352: DNA-templated transcription, initiation1.17E-04
28GO:0009658: chloroplast organization1.27E-04
29GO:0010207: photosystem II assembly2.08E-04
30GO:0032543: mitochondrial translation2.19E-04
31GO:0045038: protein import into chloroplast thylakoid membrane2.19E-04
32GO:0015995: chlorophyll biosynthetic process3.08E-04
33GO:0010190: cytochrome b6f complex assembly3.08E-04
34GO:0030488: tRNA methylation4.12E-04
35GO:1901259: chloroplast rRNA processing4.12E-04
36GO:0015671: oxygen transport5.09E-04
37GO:0042547: cell wall modification involved in multidimensional cell growth5.09E-04
38GO:0019478: D-amino acid catabolic process5.09E-04
39GO:1902458: positive regulation of stomatal opening5.09E-04
40GO:0048363: mucilage pectin metabolic process5.09E-04
41GO:0006747: FAD biosynthetic process5.09E-04
42GO:0010729: positive regulation of hydrogen peroxide biosynthetic process5.09E-04
43GO:0000476: maturation of 4.5S rRNA5.09E-04
44GO:0046901: tetrahydrofolylpolyglutamate biosynthetic process5.09E-04
45GO:0009443: pyridoxal 5'-phosphate salvage5.09E-04
46GO:0000967: rRNA 5'-end processing5.09E-04
47GO:0000105: histidine biosynthetic process6.59E-04
48GO:0019432: triglyceride biosynthetic process9.59E-04
49GO:0006432: phenylalanyl-tRNA aminoacylation1.10E-03
50GO:0018026: peptidyl-lysine monomethylation1.10E-03
51GO:0000256: allantoin catabolic process1.10E-03
52GO:0090342: regulation of cell aging1.10E-03
53GO:0034755: iron ion transmembrane transport1.10E-03
54GO:0006423: cysteinyl-tRNA aminoacylation1.10E-03
55GO:0006435: threonyl-tRNA aminoacylation1.10E-03
56GO:0071668: plant-type cell wall assembly1.10E-03
57GO:0080183: response to photooxidative stress1.10E-03
58GO:0001682: tRNA 5'-leader removal1.10E-03
59GO:1903426: regulation of reactive oxygen species biosynthetic process1.10E-03
60GO:0051262: protein tetramerization1.10E-03
61GO:0034470: ncRNA processing1.10E-03
62GO:0010198: synergid death1.10E-03
63GO:0006739: NADP metabolic process1.10E-03
64GO:1900871: chloroplast mRNA modification1.10E-03
65GO:0006782: protoporphyrinogen IX biosynthetic process1.32E-03
66GO:0006415: translational termination1.52E-03
67GO:0009089: lysine biosynthetic process via diaminopimelate1.52E-03
68GO:0010027: thylakoid membrane organization1.67E-03
69GO:0010136: ureide catabolic process1.79E-03
70GO:0015940: pantothenate biosynthetic process1.79E-03
71GO:0001578: microtubule bundle formation1.79E-03
72GO:0006617: SRP-dependent cotranslational protein targeting to membrane, signal sequence recognition1.79E-03
73GO:0045493: xylan catabolic process1.79E-03
74GO:0006954: inflammatory response1.79E-03
75GO:0009627: systemic acquired resistance1.93E-03
76GO:0090351: seedling development2.51E-03
77GO:0006145: purine nucleobase catabolic process2.60E-03
78GO:0043572: plastid fission2.60E-03
79GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly2.60E-03
80GO:0010371: regulation of gibberellin biosynthetic process2.60E-03
81GO:0009102: biotin biosynthetic process2.60E-03
82GO:0010239: chloroplast mRNA processing2.60E-03
83GO:0008615: pyridoxine biosynthetic process2.60E-03
84GO:0006424: glutamyl-tRNA aminoacylation2.60E-03
85GO:0043433: negative regulation of sequence-specific DNA binding transcription factor activity2.60E-03
86GO:0006418: tRNA aminoacylation for protein translation3.43E-03
87GO:0007020: microtubule nucleation3.50E-03
88GO:0071483: cellular response to blue light3.50E-03
89GO:0006734: NADH metabolic process3.50E-03
90GO:0010109: regulation of photosynthesis3.50E-03
91GO:0051322: anaphase3.50E-03
92GO:0009765: photosynthesis, light harvesting3.50E-03
93GO:0022622: root system development3.50E-03
94GO:0006730: one-carbon metabolic process4.13E-03
95GO:0015979: photosynthesis4.48E-03
96GO:0046907: intracellular transport4.49E-03
97GO:0016120: carotene biosynthetic process4.49E-03
98GO:0009107: lipoate biosynthetic process4.49E-03
99GO:0016123: xanthophyll biosynthetic process4.49E-03
100GO:0080110: sporopollenin biosynthetic process4.49E-03
101GO:0046785: microtubule polymerization4.49E-03
102GO:0032973: amino acid export5.56E-03
103GO:0042549: photosystem II stabilization5.56E-03
104GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway5.56E-03
105GO:0006655: phosphatidylglycerol biosynthetic process5.56E-03
106GO:0016554: cytidine to uridine editing5.56E-03
107GO:0034389: lipid particle organization6.71E-03
108GO:0009648: photoperiodism6.71E-03
109GO:0010310: regulation of hydrogen peroxide metabolic process6.71E-03
110GO:0009955: adaxial/abaxial pattern specification6.71E-03
111GO:0032880: regulation of protein localization7.95E-03
112GO:0048528: post-embryonic root development7.95E-03
113GO:0043090: amino acid import7.95E-03
114GO:0006614: SRP-dependent cotranslational protein targeting to membrane7.95E-03
115GO:0010196: nonphotochemical quenching7.95E-03
116GO:0006605: protein targeting9.25E-03
117GO:0006353: DNA-templated transcription, termination9.25E-03
118GO:2000070: regulation of response to water deprivation9.25E-03
119GO:0009231: riboflavin biosynthetic process9.25E-03
120GO:0052543: callose deposition in cell wall9.25E-03
121GO:0048564: photosystem I assembly9.25E-03
122GO:0009793: embryo development ending in seed dormancy9.73E-03
123GO:0009657: plastid organization1.06E-02
124GO:0017004: cytochrome complex assembly1.06E-02
125GO:0022900: electron transport chain1.06E-02
126GO:0006783: heme biosynthetic process1.21E-02
127GO:0009821: alkaloid biosynthetic process1.21E-02
128GO:0010206: photosystem II repair1.21E-02
129GO:0080144: amino acid homeostasis1.21E-02
130GO:0048354: mucilage biosynthetic process involved in seed coat development1.36E-02
131GO:0005982: starch metabolic process1.36E-02
132GO:0043067: regulation of programmed cell death1.36E-02
133GO:0006779: porphyrin-containing compound biosynthetic process1.36E-02
134GO:1900865: chloroplast RNA modification1.36E-02
135GO:0009817: defense response to fungus, incompatible interaction1.46E-02
136GO:0006949: syncytium formation1.52E-02
137GO:0010629: negative regulation of gene expression1.52E-02
138GO:0008285: negative regulation of cell proliferation1.68E-02
139GO:0006879: cellular iron ion homeostasis1.68E-02
140GO:0009684: indoleacetic acid biosynthetic process1.68E-02
141GO:0019684: photosynthesis, light reaction1.68E-02
142GO:0009773: photosynthetic electron transport in photosystem I1.68E-02
143GO:0007568: aging1.69E-02
144GO:0016024: CDP-diacylglycerol biosynthetic process1.85E-02
145GO:0045037: protein import into chloroplast stroma1.85E-02
146GO:0045087: innate immune response1.85E-02
147GO:0005983: starch catabolic process1.85E-02
148GO:0006413: translational initiation1.87E-02
149GO:0009725: response to hormone2.03E-02
150GO:2000012: regulation of auxin polar transport2.03E-02
151GO:0006631: fatty acid metabolic process2.20E-02
152GO:0010020: chloroplast fission2.21E-02
153GO:0016042: lipid catabolic process2.26E-02
154GO:0071732: cellular response to nitric oxide2.40E-02
155GO:0006071: glycerol metabolic process2.59E-02
156GO:0000162: tryptophan biosynthetic process2.59E-02
157GO:0007010: cytoskeleton organization2.79E-02
158GO:0006855: drug transmembrane transport2.79E-02
159GO:0043622: cortical microtubule organization2.99E-02
160GO:0007017: microtubule-based process2.99E-02
161GO:0010073: meristem maintenance2.99E-02
162GO:0016575: histone deacetylation2.99E-02
163GO:0048511: rhythmic process3.20E-02
164GO:0061077: chaperone-mediated protein folding3.20E-02
165GO:0006364: rRNA processing3.23E-02
166GO:0035428: hexose transmembrane transport3.42E-02
167GO:0031348: negative regulation of defense response3.42E-02
168GO:0019748: secondary metabolic process3.42E-02
169GO:0009814: defense response, incompatible interaction3.42E-02
170GO:0071369: cellular response to ethylene stimulus3.64E-02
171GO:0010227: floral organ abscission3.64E-02
172GO:0009831: plant-type cell wall modification involved in multidimensional cell growth3.64E-02
173GO:0015031: protein transport3.78E-02
174GO:0009306: protein secretion3.86E-02
175GO:0010584: pollen exine formation3.86E-02
176GO:0016117: carotenoid biosynthetic process4.08E-02
177GO:0009789: positive regulation of abscisic acid-activated signaling pathway4.08E-02
178GO:0051028: mRNA transport4.08E-02
179GO:0008284: positive regulation of cell proliferation4.08E-02
180GO:0000271: polysaccharide biosynthetic process4.32E-02
181GO:0042335: cuticle development4.32E-02
182GO:0008033: tRNA processing4.32E-02
183GO:0000413: protein peptidyl-prolyl isomerization4.32E-02
184GO:0010197: polar nucleus fusion4.55E-02
185GO:0046323: glucose import4.55E-02
186GO:0009958: positive gravitropism4.55E-02
187GO:0045489: pectin biosynthetic process4.55E-02
188GO:0006396: RNA processing4.71E-02
189GO:0009735: response to cytokinin4.77E-02
190GO:0042752: regulation of circadian rhythm4.79E-02
191GO:0009646: response to absence of light4.79E-02
RankGO TermAdjusted P value
1GO:0071522: ureidoglycine aminohydrolase activity0.00E+00
2GO:0051721: protein phosphatase 2A binding0.00E+00
3GO:0043014: alpha-tubulin binding0.00E+00
4GO:0080176: xyloglucan 1,6-alpha-xylosidase activity0.00E+00
5GO:0047538: 2-carboxy-D-arabinitol-1-phosphatase activity0.00E+00
6GO:0050518: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase activity0.00E+00
7GO:0042903: tubulin deacetylase activity0.00E+00
8GO:0045435: lycopene epsilon cyclase activity0.00E+00
9GO:0004823: leucine-tRNA ligase activity0.00E+00
10GO:0003858: 3-hydroxybutyrate dehydrogenase activity0.00E+00
11GO:0004822: isoleucine-tRNA ligase activity0.00E+00
12GO:0004636: phosphoribosyl-ATP diphosphatase activity0.00E+00
13GO:0015267: channel activity0.00E+00
14GO:0003949: 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide isomerase activity0.00E+00
15GO:0033819: lipoyl(octanoyl) transferase activity0.00E+00
16GO:0005048: signal sequence binding0.00E+00
17GO:0004076: biotin synthase activity0.00E+00
18GO:0043136: glycerol-3-phosphatase activity0.00E+00
19GO:0000121: glycerol-1-phosphatase activity0.00E+00
20GO:0047450: crotonoyl-[acyl-carrier-protein] hydratase activity0.00E+00
21GO:0019144: ADP-sugar diphosphatase activity0.00E+00
22GO:0061634: alpha-D-xyloside xylohydrolase0.00E+00
23GO:0050567: glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity0.00E+00
24GO:0043864: indoleacetamide hydrolase activity0.00E+00
25GO:0050236: pyridoxine:NADP 4-dehydrogenase activity0.00E+00
26GO:0004635: phosphoribosyl-AMP cyclohydrolase activity0.00E+00
27GO:0050613: delta14-sterol reductase activity0.00E+00
28GO:0016851: magnesium chelatase activity6.14E-07
29GO:0003755: peptidyl-prolyl cis-trans isomerase activity1.22E-06
30GO:0001053: plastid sigma factor activity1.76E-06
31GO:0016987: sigma factor activity1.76E-06
32GO:0008839: 4-hydroxy-tetrahydrodipicolinate reductase1.14E-05
33GO:0004326: tetrahydrofolylpolyglutamate synthase activity1.14E-05
34GO:0005528: FK506 binding2.07E-05
35GO:0002161: aminoacyl-tRNA editing activity3.85E-05
36GO:0030267: glyoxylate reductase (NADP) activity3.85E-05
37GO:0070402: NADPH binding3.85E-05
38GO:0016149: translation release factor activity, codon specific8.23E-05
39GO:0004040: amidase activity2.19E-04
40GO:2001070: starch binding3.08E-04
41GO:0004616: phosphogluconate dehydrogenase (decarboxylating) activity4.12E-04
42GO:0019203: carbohydrate phosphatase activity5.09E-04
43GO:0005080: protein kinase C binding5.09E-04
44GO:0004853: uroporphyrinogen decarboxylase activity5.09E-04
45GO:0030785: [ribulose-bisphosphate carboxylase]-lysine N-methyltransferase activity5.09E-04
46GO:0052857: NADPHX epimerase activity5.09E-04
47GO:0052856: NADHX epimerase activity5.09E-04
48GO:0016784: 3-mercaptopyruvate sulfurtransferase activity5.09E-04
49GO:0005344: oxygen transporter activity5.09E-04
50GO:0042286: glutamate-1-semialdehyde 2,1-aminomutase activity5.09E-04
51GO:0005227: calcium activated cation channel activity5.09E-04
52GO:0004733: pyridoxamine-phosphate oxidase activity5.09E-04
53GO:0003864: 3-methyl-2-oxobutanoate hydroxymethyltransferase activity5.09E-04
54GO:0004856: xylulokinase activity5.09E-04
55GO:0009496: plastoquinol--plastocyanin reductase activity5.09E-04
56GO:0080042: ADP-glucose pyrophosphohydrolase activity5.09E-04
57GO:0050308: sugar-phosphatase activity5.09E-04
58GO:0016788: hydrolase activity, acting on ester bonds6.24E-04
59GO:0003747: translation release factor activity9.59E-04
60GO:0004826: phenylalanine-tRNA ligase activity1.10E-03
61GO:0017118: lipoyltransferase activity1.10E-03
62GO:0080041: ADP-ribose pyrophosphohydrolase activity1.10E-03
63GO:0009977: proton motive force dependent protein transmembrane transporter activity1.10E-03
64GO:0016415: octanoyltransferase activity1.10E-03
65GO:0004817: cysteine-tRNA ligase activity1.10E-03
66GO:0003919: FMN adenylyltransferase activity1.10E-03
67GO:0047158: sinapoylglucose-sinapoylglucose O-sinapoyltransferase activity1.10E-03
68GO:0004829: threonine-tRNA ligase activity1.10E-03
69GO:0019171: 3-hydroxyacyl-[acyl-carrier-protein] dehydratase activity1.10E-03
70GO:0008237: metallopeptidase activity1.44E-03
71GO:0000049: tRNA binding1.74E-03
72GO:0003955: NAD(P)H dehydrogenase (quinone) activity1.79E-03
73GO:0015462: ATPase-coupled protein transmembrane transporter activity1.79E-03
74GO:0004180: carboxypeptidase activity1.79E-03
75GO:0005504: fatty acid binding1.79E-03
76GO:0003913: DNA photolyase activity1.79E-03
77GO:0048487: beta-tubulin binding2.60E-03
78GO:0004792: thiosulfate sulfurtransferase activity2.60E-03
79GO:0016628: oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor2.60E-03
80GO:0043023: ribosomal large subunit binding2.60E-03
81GO:0001872: (1->3)-beta-D-glucan binding2.60E-03
82GO:0046556: alpha-L-arabinofuranosidase activity3.50E-03
83GO:0016279: protein-lysine N-methyltransferase activity3.50E-03
84GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor3.50E-03
85GO:0004045: aminoacyl-tRNA hydrolase activity3.50E-03
86GO:0016810: hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds3.50E-03
87GO:0045430: chalcone isomerase activity3.50E-03
88GO:0009044: xylan 1,4-beta-xylosidase activity3.50E-03
89GO:0004176: ATP-dependent peptidase activity3.77E-03
90GO:0016773: phosphotransferase activity, alcohol group as acceptor4.49E-03
91GO:0045300: acyl-[acyl-carrier-protein] desaturase activity4.49E-03
92GO:0030570: pectate lyase activity4.51E-03
93GO:0004812: aminoacyl-tRNA ligase activity5.32E-03
94GO:0004366: glycerol-3-phosphate O-acyltransferase activity5.56E-03
95GO:0042578: phosphoric ester hydrolase activity5.56E-03
96GO:0004526: ribonuclease P activity5.56E-03
97GO:0005525: GTP binding5.81E-03
98GO:0003899: DNA-directed 5'-3' RNA polymerase activity6.46E-03
99GO:0004144: diacylglycerol O-acyltransferase activity6.71E-03
100GO:0005261: cation channel activity6.71E-03
101GO:0004723: calcium-dependent protein serine/threonine phosphatase activity6.71E-03
102GO:0051920: peroxiredoxin activity6.71E-03
103GO:0004017: adenylate kinase activity6.71E-03
104GO:0048038: quinone binding7.67E-03
105GO:0009881: photoreceptor activity7.95E-03
106GO:0016787: hydrolase activity8.03E-03
107GO:0043022: ribosome binding9.25E-03
108GO:0004033: aldo-keto reductase (NADP) activity9.25E-03
109GO:0005337: nucleoside transmembrane transporter activity9.25E-03
110GO:0016209: antioxidant activity9.25E-03
111GO:0008312: 7S RNA binding9.25E-03
112GO:0008173: RNA methyltransferase activity1.06E-02
113GO:0032041: NAD-dependent histone deacetylase activity (H3-K14 specific)1.06E-02
114GO:0008138: protein tyrosine/serine/threonine phosphatase activity1.21E-02
115GO:0019843: rRNA binding1.35E-02
116GO:0016844: strictosidine synthase activity1.36E-02
117GO:0005381: iron ion transmembrane transporter activity1.36E-02
118GO:0008236: serine-type peptidase activity1.39E-02
119GO:0016887: ATPase activity1.51E-02
120GO:0052689: carboxylic ester hydrolase activity1.53E-02
121GO:0004222: metalloendopeptidase activity1.61E-02
122GO:0016491: oxidoreductase activity1.63E-02
123GO:0047372: acylglycerol lipase activity1.68E-02
124GO:0004022: alcohol dehydrogenase (NAD) activity2.03E-02
125GO:0031072: heat shock protein binding2.03E-02
126GO:0042973: glucan endo-1,3-beta-D-glucosidase activity2.21E-02
127GO:0008266: poly(U) RNA binding2.21E-02
128GO:0008083: growth factor activity2.21E-02
129GO:0003924: GTPase activity2.36E-02
130GO:0003743: translation initiation factor activity2.48E-02
131GO:0003723: RNA binding2.48E-02
132GO:0051537: 2 iron, 2 sulfur cluster binding2.59E-02
133GO:0043621: protein self-association2.59E-02
134GO:0051536: iron-sulfur cluster binding2.79E-02
135GO:0004857: enzyme inhibitor activity2.79E-02
136GO:0004407: histone deacetylase activity2.79E-02
137GO:0051087: chaperone binding2.99E-02
138GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds3.03E-02
139GO:0047262: polygalacturonate 4-alpha-galacturonosyltransferase activity3.42E-02
140GO:0022891: substrate-specific transmembrane transporter activity3.64E-02
141GO:0003756: protein disulfide isomerase activity3.86E-02
142GO:0008080: N-acetyltransferase activity4.55E-02
143GO:0010181: FMN binding4.79E-02
144GO:0005355: glucose transmembrane transporter activity4.79E-02
145GO:0050662: coenzyme binding4.79E-02
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Gene type



Gene DE type