GO Enrichment Analysis of Co-expressed Genes with
AT4G28780
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0010323: negative regulation of isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway | 0.00E+00 |
| 2 | GO:0045014: negative regulation of transcription by glucose | 0.00E+00 |
| 3 | GO:0000819: sister chromatid segregation | 0.00E+00 |
| 4 | GO:0000491: small nucleolar ribonucleoprotein complex assembly | 0.00E+00 |
| 5 | GO:0044774: mitotic DNA integrity checkpoint | 0.00E+00 |
| 6 | GO:0090322: regulation of superoxide metabolic process | 0.00E+00 |
| 7 | GO:1901528: hydrogen peroxide mediated signaling pathway involved in stomatal movement | 0.00E+00 |
| 8 | GO:0080127: fruit septum development | 0.00E+00 |
| 9 | GO:0046486: glycerolipid metabolic process | 0.00E+00 |
| 10 | GO:0019988: charged-tRNA amino acid modification | 0.00E+00 |
| 11 | GO:0000492: box C/D snoRNP assembly | 0.00E+00 |
| 12 | GO:0006364: rRNA processing | 8.52E-08 |
| 13 | GO:0009658: chloroplast organization | 8.78E-06 |
| 14 | GO:0009793: embryo development ending in seed dormancy | 8.19E-05 |
| 15 | GO:0042127: regulation of cell proliferation | 1.81E-04 |
| 16 | GO:0006401: RNA catabolic process | 2.13E-04 |
| 17 | GO:0042255: ribosome assembly | 2.69E-04 |
| 18 | GO:0006353: DNA-templated transcription, termination | 2.69E-04 |
| 19 | GO:0000025: maltose catabolic process | 2.77E-04 |
| 20 | GO:0080112: seed growth | 2.77E-04 |
| 21 | GO:1905039: carboxylic acid transmembrane transport | 2.77E-04 |
| 22 | GO:1905200: gibberellic acid transmembrane transport | 2.77E-04 |
| 23 | GO:0033206: meiotic cytokinesis | 2.77E-04 |
| 24 | GO:1900865: chloroplast RNA modification | 4.74E-04 |
| 25 | GO:0048829: root cap development | 5.52E-04 |
| 26 | GO:0016441: posttranscriptional gene silencing | 5.52E-04 |
| 27 | GO:1901529: positive regulation of anion channel activity | 6.09E-04 |
| 28 | GO:0010569: regulation of double-strand break repair via homologous recombination | 6.09E-04 |
| 29 | GO:0048731: system development | 6.09E-04 |
| 30 | GO:0006650: glycerophospholipid metabolic process | 6.09E-04 |
| 31 | GO:2000071: regulation of defense response by callose deposition | 6.09E-04 |
| 32 | GO:0010588: cotyledon vascular tissue pattern formation | 8.26E-04 |
| 33 | GO:0010020: chloroplast fission | 9.28E-04 |
| 34 | GO:1901527: abscisic acid-activated signaling pathway involved in stomatal movement | 9.88E-04 |
| 35 | GO:0046168: glycerol-3-phosphate catabolic process | 9.88E-04 |
| 36 | GO:0006518: peptide metabolic process | 9.88E-04 |
| 37 | GO:2000377: regulation of reactive oxygen species metabolic process | 1.27E-03 |
| 38 | GO:0009102: biotin biosynthetic process | 1.41E-03 |
| 39 | GO:0007276: gamete generation | 1.41E-03 |
| 40 | GO:0043481: anthocyanin accumulation in tissues in response to UV light | 1.41E-03 |
| 41 | GO:0006072: glycerol-3-phosphate metabolic process | 1.41E-03 |
| 42 | GO:0045017: glycerolipid biosynthetic process | 1.41E-03 |
| 43 | GO:0010371: regulation of gibberellin biosynthetic process | 1.41E-03 |
| 44 | GO:0003333: amino acid transmembrane transport | 1.54E-03 |
| 45 | GO:2000022: regulation of jasmonic acid mediated signaling pathway | 1.68E-03 |
| 46 | GO:0006221: pyrimidine nucleotide biosynthetic process | 1.89E-03 |
| 47 | GO:0006808: regulation of nitrogen utilization | 1.89E-03 |
| 48 | GO:1900864: mitochondrial RNA modification | 1.89E-03 |
| 49 | GO:0008033: tRNA processing | 2.33E-03 |
| 50 | GO:0010501: RNA secondary structure unwinding | 2.33E-03 |
| 51 | GO:0016120: carotene biosynthetic process | 2.41E-03 |
| 52 | GO:0016558: protein import into peroxisome matrix | 2.41E-03 |
| 53 | GO:0048497: maintenance of floral organ identity | 2.41E-03 |
| 54 | GO:0016123: xanthophyll biosynthetic process | 2.41E-03 |
| 55 | GO:0010305: leaf vascular tissue pattern formation | 2.51E-03 |
| 56 | GO:0009734: auxin-activated signaling pathway | 2.58E-03 |
| 57 | GO:0016554: cytidine to uridine editing | 2.98E-03 |
| 58 | GO:0060918: auxin transport | 2.98E-03 |
| 59 | GO:0042793: transcription from plastid promoter | 2.98E-03 |
| 60 | GO:0003006: developmental process involved in reproduction | 2.98E-03 |
| 61 | GO:0009643: photosynthetic acclimation | 2.98E-03 |
| 62 | GO:0010583: response to cyclopentenone | 3.31E-03 |
| 63 | GO:0032502: developmental process | 3.31E-03 |
| 64 | GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway | 3.47E-03 |
| 65 | GO:2000033: regulation of seed dormancy process | 3.58E-03 |
| 66 | GO:0000462: maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) | 3.58E-03 |
| 67 | GO:0009942: longitudinal axis specification | 3.58E-03 |
| 68 | GO:0000079: regulation of cyclin-dependent protein serine/threonine kinase activity | 3.58E-03 |
| 69 | GO:0010310: regulation of hydrogen peroxide metabolic process | 3.58E-03 |
| 70 | GO:1900056: negative regulation of leaf senescence | 4.23E-03 |
| 71 | GO:0000082: G1/S transition of mitotic cell cycle | 4.23E-03 |
| 72 | GO:0010098: suspensor development | 4.23E-03 |
| 73 | GO:0010444: guard mother cell differentiation | 4.23E-03 |
| 74 | GO:0000712: resolution of meiotic recombination intermediates | 4.23E-03 |
| 75 | GO:0010374: stomatal complex development | 4.23E-03 |
| 76 | GO:0005978: glycogen biosynthetic process | 4.90E-03 |
| 77 | GO:0009787: regulation of abscisic acid-activated signaling pathway | 4.90E-03 |
| 78 | GO:0009642: response to light intensity | 4.90E-03 |
| 79 | GO:0046620: regulation of organ growth | 4.90E-03 |
| 80 | GO:0009938: negative regulation of gibberellic acid mediated signaling pathway | 4.90E-03 |
| 81 | GO:0006402: mRNA catabolic process | 4.90E-03 |
| 82 | GO:0010492: maintenance of shoot apical meristem identity | 4.90E-03 |
| 83 | GO:0052543: callose deposition in cell wall | 4.90E-03 |
| 84 | GO:0009733: response to auxin | 5.18E-03 |
| 85 | GO:0009827: plant-type cell wall modification | 5.62E-03 |
| 86 | GO:0010233: phloem transport | 5.62E-03 |
| 87 | GO:0010497: plasmodesmata-mediated intercellular transport | 5.62E-03 |
| 88 | GO:0019430: removal of superoxide radicals | 5.62E-03 |
| 89 | GO:0010052: guard cell differentiation | 5.62E-03 |
| 90 | GO:0032544: plastid translation | 5.62E-03 |
| 91 | GO:0007389: pattern specification process | 5.62E-03 |
| 92 | GO:0040008: regulation of growth | 6.02E-03 |
| 93 | GO:0048507: meristem development | 6.37E-03 |
| 94 | GO:0000373: Group II intron splicing | 6.37E-03 |
| 95 | GO:0048589: developmental growth | 6.37E-03 |
| 96 | GO:0010218: response to far red light | 6.43E-03 |
| 97 | GO:0006865: amino acid transport | 7.07E-03 |
| 98 | GO:0031425: chloroplast RNA processing | 7.15E-03 |
| 99 | GO:0009867: jasmonic acid mediated signaling pathway | 7.40E-03 |
| 100 | GO:0006535: cysteine biosynthetic process from serine | 7.97E-03 |
| 101 | GO:0009641: shade avoidance | 7.97E-03 |
| 102 | GO:0006949: syncytium formation | 7.97E-03 |
| 103 | GO:0006259: DNA metabolic process | 7.97E-03 |
| 104 | GO:0046856: phosphatidylinositol dephosphorylation | 8.82E-03 |
| 105 | GO:0009682: induced systemic resistance | 8.82E-03 |
| 106 | GO:0015770: sucrose transport | 8.82E-03 |
| 107 | GO:0006265: DNA topological change | 8.82E-03 |
| 108 | GO:1903507: negative regulation of nucleic acid-templated transcription | 8.82E-03 |
| 109 | GO:0009750: response to fructose | 8.82E-03 |
| 110 | GO:0048765: root hair cell differentiation | 8.82E-03 |
| 111 | GO:0009744: response to sucrose | 9.55E-03 |
| 112 | GO:0006312: mitotic recombination | 9.70E-03 |
| 113 | GO:0012501: programmed cell death | 9.70E-03 |
| 114 | GO:0005983: starch catabolic process | 9.70E-03 |
| 115 | GO:0045037: protein import into chloroplast stroma | 9.70E-03 |
| 116 | GO:0010582: floral meristem determinacy | 9.70E-03 |
| 117 | GO:0010152: pollen maturation | 9.70E-03 |
| 118 | GO:0010102: lateral root morphogenesis | 1.06E-02 |
| 119 | GO:0006006: glucose metabolic process | 1.06E-02 |
| 120 | GO:0048768: root hair cell tip growth | 1.16E-02 |
| 121 | GO:0048467: gynoecium development | 1.16E-02 |
| 122 | GO:0031347: regulation of defense response | 1.16E-02 |
| 123 | GO:0009887: animal organ morphogenesis | 1.16E-02 |
| 124 | GO:0080188: RNA-directed DNA methylation | 1.25E-02 |
| 125 | GO:0009901: anther dehiscence | 1.25E-02 |
| 126 | GO:0006636: unsaturated fatty acid biosynthetic process | 1.35E-02 |
| 127 | GO:0019344: cysteine biosynthetic process | 1.46E-02 |
| 128 | GO:0009863: salicylic acid mediated signaling pathway | 1.46E-02 |
| 129 | GO:0010187: negative regulation of seed germination | 1.46E-02 |
| 130 | GO:0048316: seed development | 1.58E-02 |
| 131 | GO:0048367: shoot system development | 1.58E-02 |
| 132 | GO:0051301: cell division | 1.62E-02 |
| 133 | GO:0010431: seed maturation | 1.67E-02 |
| 134 | GO:0006351: transcription, DNA-templated | 1.68E-02 |
| 135 | GO:0009740: gibberellic acid mediated signaling pathway | 1.73E-02 |
| 136 | GO:0030245: cellulose catabolic process | 1.78E-02 |
| 137 | GO:0009624: response to nematode | 1.84E-02 |
| 138 | GO:0009831: plant-type cell wall modification involved in multidimensional cell growth | 1.89E-02 |
| 139 | GO:0006396: RNA processing | 1.90E-02 |
| 140 | GO:0051726: regulation of cell cycle | 1.95E-02 |
| 141 | GO:0048443: stamen development | 2.01E-02 |
| 142 | GO:0010091: trichome branching | 2.01E-02 |
| 143 | GO:0042335: cuticle development | 2.25E-02 |
| 144 | GO:0080022: primary root development | 2.25E-02 |
| 145 | GO:0010087: phloem or xylem histogenesis | 2.25E-02 |
| 146 | GO:0010118: stomatal movement | 2.25E-02 |
| 147 | GO:0071472: cellular response to salt stress | 2.37E-02 |
| 148 | GO:0009741: response to brassinosteroid | 2.37E-02 |
| 149 | GO:0007059: chromosome segregation | 2.50E-02 |
| 150 | GO:0006397: mRNA processing | 2.53E-02 |
| 151 | GO:0009791: post-embryonic development | 2.63E-02 |
| 152 | GO:0009749: response to glucose | 2.63E-02 |
| 153 | GO:0019252: starch biosynthetic process | 2.63E-02 |
| 154 | GO:0008654: phospholipid biosynthetic process | 2.63E-02 |
| 155 | GO:0080156: mitochondrial mRNA modification | 2.76E-02 |
| 156 | GO:0002229: defense response to oomycetes | 2.76E-02 |
| 157 | GO:0006635: fatty acid beta-oxidation | 2.76E-02 |
| 158 | GO:0031047: gene silencing by RNA | 2.89E-02 |
| 159 | GO:0030163: protein catabolic process | 3.02E-02 |
| 160 | GO:0019760: glucosinolate metabolic process | 3.16E-02 |
| 161 | GO:0006464: cellular protein modification process | 3.16E-02 |
| 162 | GO:0009828: plant-type cell wall loosening | 3.16E-02 |
| 163 | GO:0045490: pectin catabolic process | 3.18E-02 |
| 164 | GO:0009451: RNA modification | 3.26E-02 |
| 165 | GO:0009739: response to gibberellin | 3.56E-02 |
| 166 | GO:0010029: regulation of seed germination | 3.73E-02 |
| 167 | GO:0008380: RNA splicing | 3.79E-02 |
| 168 | GO:0009627: systemic acquired resistance | 3.87E-02 |
| 169 | GO:0015995: chlorophyll biosynthetic process | 4.02E-02 |
| 170 | GO:0016311: dephosphorylation | 4.17E-02 |
| 171 | GO:0042254: ribosome biogenesis | 4.99E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0043399: tRNA A64-2'-O-ribosylphosphate transferase activity | 0.00E+00 |
| 2 | GO:0016763: transferase activity, transferring pentosyl groups | 0.00E+00 |
| 3 | GO:0008859: exoribonuclease II activity | 0.00E+00 |
| 4 | GO:0004141: dethiobiotin synthase activity | 0.00E+00 |
| 5 | GO:0004835: tubulin-tyrosine ligase activity | 0.00E+00 |
| 6 | GO:0004015: adenosylmethionine-8-amino-7-oxononanoate transaminase activity | 0.00E+00 |
| 7 | GO:0003723: RNA binding | 7.85E-05 |
| 8 | GO:1905201: gibberellin transmembrane transporter activity | 2.77E-04 |
| 9 | GO:0004134: 4-alpha-glucanotransferase activity | 2.77E-04 |
| 10 | GO:0016901: oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor | 2.77E-04 |
| 11 | GO:0004654: polyribonucleotide nucleotidyltransferase activity | 2.77E-04 |
| 12 | GO:0008173: RNA methyltransferase activity | 3.32E-04 |
| 13 | GO:0003844: 1,4-alpha-glucan branching enzyme activity | 6.09E-04 |
| 14 | GO:0042389: omega-3 fatty acid desaturase activity | 6.09E-04 |
| 15 | GO:0004809: tRNA (guanine-N2-)-methyltransferase activity | 6.09E-04 |
| 16 | GO:0019843: rRNA binding | 7.53E-04 |
| 17 | GO:0000175: 3'-5'-exoribonuclease activity | 8.26E-04 |
| 18 | GO:0043169: cation binding | 9.88E-04 |
| 19 | GO:0004367: glycerol-3-phosphate dehydrogenase [NAD+] activity | 9.88E-04 |
| 20 | GO:0009041: uridylate kinase activity | 1.41E-03 |
| 21 | GO:0003916: DNA topoisomerase activity | 1.41E-03 |
| 22 | GO:0030570: pectate lyase activity | 1.83E-03 |
| 23 | GO:0010328: auxin influx transmembrane transporter activity | 1.89E-03 |
| 24 | GO:0010011: auxin binding | 1.89E-03 |
| 25 | GO:0003727: single-stranded RNA binding | 1.99E-03 |
| 26 | GO:0043565: sequence-specific DNA binding | 2.80E-03 |
| 27 | GO:0004784: superoxide dismutase activity | 2.98E-03 |
| 28 | GO:0034485: phosphatidylinositol-3,4,5-trisphosphate 5-phosphatase activity | 2.98E-03 |
| 29 | GO:0004556: alpha-amylase activity | 2.98E-03 |
| 30 | GO:0003968: RNA-directed 5'-3' RNA polymerase activity | 2.98E-03 |
| 31 | GO:0004124: cysteine synthase activity | 3.58E-03 |
| 32 | GO:0030515: snoRNA binding | 4.23E-03 |
| 33 | GO:0004714: transmembrane receptor protein tyrosine kinase activity | 4.90E-03 |
| 34 | GO:0004004: ATP-dependent RNA helicase activity | 5.26E-03 |
| 35 | GO:0003724: RNA helicase activity | 5.62E-03 |
| 36 | GO:0016717: oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water | 5.62E-03 |
| 37 | GO:0003918: DNA topoisomerase type II (ATP-hydrolyzing) activity | 5.62E-03 |
| 38 | GO:0000989: transcription factor activity, transcription factor binding | 6.37E-03 |
| 39 | GO:0004519: endonuclease activity | 6.77E-03 |
| 40 | GO:0003700: transcription factor activity, sequence-specific DNA binding | 8.39E-03 |
| 41 | GO:0008515: sucrose transmembrane transporter activity | 8.82E-03 |
| 42 | GO:0004439: phosphatidylinositol-4,5-bisphosphate 5-phosphatase activity | 9.70E-03 |
| 43 | GO:0008289: lipid binding | 9.84E-03 |
| 44 | GO:0003725: double-stranded RNA binding | 1.06E-02 |
| 45 | GO:0015293: symporter activity | 1.07E-02 |
| 46 | GO:0008266: poly(U) RNA binding | 1.16E-02 |
| 47 | GO:0051119: sugar transmembrane transporter activity | 1.25E-02 |
| 48 | GO:0003712: transcription cofactor activity | 1.25E-02 |
| 49 | GO:0004190: aspartic-type endopeptidase activity | 1.25E-02 |
| 50 | GO:0015171: amino acid transmembrane transporter activity | 1.43E-02 |
| 51 | GO:0003714: transcription corepressor activity | 1.46E-02 |
| 52 | GO:0004540: ribonuclease activity | 1.67E-02 |
| 53 | GO:0008094: DNA-dependent ATPase activity | 1.67E-02 |
| 54 | GO:0016874: ligase activity | 1.73E-02 |
| 55 | GO:0003779: actin binding | 1.79E-02 |
| 56 | GO:0008810: cellulase activity | 1.89E-02 |
| 57 | GO:0008026: ATP-dependent helicase activity | 1.95E-02 |
| 58 | GO:0042803: protein homodimerization activity | 1.95E-02 |
| 59 | GO:0005102: receptor binding | 2.13E-02 |
| 60 | GO:0016538: cyclin-dependent protein serine/threonine kinase regulator activity | 2.37E-02 |
| 61 | GO:0030170: pyridoxal phosphate binding | 2.56E-02 |
| 62 | GO:0003676: nucleic acid binding | 2.57E-02 |
| 63 | GO:0019901: protein kinase binding | 2.63E-02 |
| 64 | GO:0005515: protein binding | 2.71E-02 |
| 65 | GO:0048038: quinone binding | 2.76E-02 |
| 66 | GO:0016791: phosphatase activity | 3.16E-02 |
| 67 | GO:0016887: ATPase activity | 4.13E-02 |
| 68 | GO:0008757: S-adenosylmethionine-dependent methyltransferase activity | 4.17E-02 |
| 69 | GO:0004222: metalloendopeptidase activity | 4.64E-02 |
| 70 | GO:0004693: cyclin-dependent protein serine/threonine kinase activity | 4.64E-02 |
| 71 | GO:0008168: methyltransferase activity | 4.72E-02 |