Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT4G28760

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0090355: positive regulation of auxin metabolic process0.00E+00
2GO:0090697: post-embryonic plant organ morphogenesis0.00E+00
3GO:0090358: positive regulation of tryptophan metabolic process0.00E+00
4GO:0042966: biotin carboxyl carrier protein biosynthetic process0.00E+00
5GO:2000469: negative regulation of peroxidase activity0.00E+00
6GO:2000121: regulation of removal of superoxide radicals0.00E+00
7GO:0045176: apical protein localization0.00E+00
8GO:0007155: cell adhesion4.62E-07
9GO:0048657: anther wall tapetum cell differentiation9.50E-05
10GO:1902334: fructose export from vacuole to cytoplasm9.50E-05
11GO:2000082: regulation of L-ascorbic acid biosynthetic process3.73E-04
12GO:0009405: pathogenesis3.73E-04
13GO:0009647: skotomorphogenesis5.37E-04
14GO:0006168: adenine salvage5.37E-04
15GO:0006166: purine ribonucleoside salvage5.37E-04
16GO:0009963: positive regulation of flavonoid biosynthetic process5.37E-04
17GO:0048442: sepal development7.14E-04
18GO:0009649: entrainment of circadian clock7.14E-04
19GO:0046283: anthocyanin-containing compound metabolic process9.02E-04
20GO:0045038: protein import into chloroplast thylakoid membrane9.02E-04
21GO:1902183: regulation of shoot apical meristem development9.02E-04
22GO:0044209: AMP salvage9.02E-04
23GO:0010158: abaxial cell fate specification9.02E-04
24GO:0034052: positive regulation of plant-type hypersensitive response9.02E-04
25GO:0006544: glycine metabolic process9.02E-04
26GO:0009911: positive regulation of flower development1.04E-03
27GO:0006563: L-serine metabolic process1.10E-03
28GO:0006751: glutathione catabolic process1.10E-03
29GO:0048827: phyllome development1.10E-03
30GO:0010315: auxin efflux1.10E-03
31GO:0000741: karyogamy1.10E-03
32GO:0048573: photoperiodism, flowering1.21E-03
33GO:0010076: maintenance of floral meristem identity1.31E-03
34GO:0048280: vesicle fusion with Golgi apparatus1.31E-03
35GO:0010189: vitamin E biosynthetic process1.31E-03
36GO:0009088: threonine biosynthetic process1.31E-03
37GO:0000079: regulation of cyclin-dependent protein serine/threonine kinase activity1.31E-03
38GO:0000122: negative regulation of transcription from RNA polymerase II promoter1.54E-03
39GO:0030307: positive regulation of cell growth1.54E-03
40GO:0043068: positive regulation of programmed cell death1.78E-03
41GO:0006997: nucleus organization2.03E-03
42GO:2000024: regulation of leaf development2.29E-03
43GO:0048354: mucilage biosynthetic process involved in seed coat development2.56E-03
44GO:0009641: shade avoidance2.85E-03
45GO:0010192: mucilage biosynthetic process2.85E-03
46GO:0006896: Golgi to vacuole transport2.85E-03
47GO:0006995: cellular response to nitrogen starvation2.85E-03
48GO:0048441: petal development2.85E-03
49GO:0010224: response to UV-B2.99E-03
50GO:0009750: response to fructose3.14E-03
51GO:0006629: lipid metabolic process3.56E-03
52GO:0010229: inflorescence development3.76E-03
53GO:0010540: basipetal auxin transport4.08E-03
54GO:0048440: carpel development4.08E-03
55GO:0009825: multidimensional cell growth4.41E-03
56GO:0000162: tryptophan biosynthetic process4.75E-03
57GO:0009944: polarity specification of adaxial/abaxial axis5.10E-03
58GO:0007017: microtubule-based process5.46E-03
59GO:0051260: protein homooligomerization5.83E-03
60GO:0019915: lipid storage5.83E-03
61GO:0035428: hexose transmembrane transport6.20E-03
62GO:0009814: defense response, incompatible interaction6.20E-03
63GO:0009294: DNA mediated transformation6.58E-03
64GO:0071369: cellular response to ethylene stimulus6.58E-03
65GO:0010584: pollen exine formation6.98E-03
66GO:0048443: stamen development6.98E-03
67GO:0009416: response to light stimulus7.37E-03
68GO:0042147: retrograde transport, endosome to Golgi7.38E-03
69GO:0010197: polar nucleus fusion8.21E-03
70GO:0046323: glucose import8.21E-03
71GO:0009741: response to brassinosteroid8.21E-03
72GO:0010268: brassinosteroid homeostasis8.21E-03
73GO:0010154: fruit development8.21E-03
74GO:0007018: microtubule-based movement8.63E-03
75GO:0009646: response to absence of light8.63E-03
76GO:0048825: cotyledon development9.06E-03
77GO:0009749: response to glucose9.06E-03
78GO:0008654: phospholipid biosynthetic process9.06E-03
79GO:0009851: auxin biosynthetic process9.06E-03
80GO:0006623: protein targeting to vacuole9.06E-03
81GO:0006891: intra-Golgi vesicle-mediated transport9.51E-03
82GO:0016132: brassinosteroid biosynthetic process9.51E-03
83GO:0048510: regulation of timing of transition from vegetative to reproductive phase9.51E-03
84GO:0071554: cell wall organization or biogenesis9.51E-03
85GO:0010583: response to cyclopentenone9.96E-03
86GO:0009826: unidimensional cell growth1.05E-02
87GO:0006464: cellular protein modification process1.09E-02
88GO:0016125: sterol metabolic process1.09E-02
89GO:0010252: auxin homeostasis1.09E-02
90GO:0006888: ER to Golgi vesicle-mediated transport1.38E-02
91GO:0009834: plant-type secondary cell wall biogenesis1.59E-02
92GO:0010119: regulation of stomatal movement1.65E-02
93GO:0045892: negative regulation of transcription, DNA-templated1.65E-02
94GO:0048527: lateral root development1.65E-02
95GO:0006952: defense response1.86E-02
96GO:0009744: response to sucrose2.10E-02
97GO:0051707: response to other organism2.10E-02
98GO:0009640: photomorphogenesis2.10E-02
99GO:0009644: response to high light intensity2.23E-02
100GO:0008643: carbohydrate transport2.23E-02
101GO:0016567: protein ubiquitination2.25E-02
102GO:0000165: MAPK cascade2.41E-02
103GO:0009585: red, far-red light phototransduction2.60E-02
104GO:0009909: regulation of flower development2.80E-02
105GO:0048367: shoot system development3.00E-02
106GO:0009626: plant-type hypersensitive response3.07E-02
107GO:0051726: regulation of cell cycle3.49E-02
108GO:0009742: brassinosteroid mediated signaling pathway3.49E-02
109GO:0009058: biosynthetic process4.07E-02
110GO:0042744: hydrogen peroxide catabolic process4.30E-02
111GO:0007623: circadian rhythm4.93E-02
112GO:0010150: leaf senescence4.93E-02
113GO:0045490: pectin catabolic process4.93E-02
RankGO TermAdjusted P value
1GO:0010276: phytol kinase activity0.00E+00
2GO:1990534: thermospermine oxidase activity0.00E+00
3GO:0004078: biotin-[methylcrotonoyl-CoA-carboxylase] ligase activity0.00E+00
4GO:0004077: biotin-[acetyl-CoA-carboxylase] ligase activity0.00E+00
5GO:0019210: kinase inhibitor activity9.50E-05
6GO:0047259: glucomannan 4-beta-mannosyltransferase activity9.50E-05
7GO:0004795: threonine synthase activity9.50E-05
8GO:0005353: fructose transmembrane transporter activity2.24E-04
9GO:0003839: gamma-glutamylcyclotransferase activity2.24E-04
10GO:0090729: toxin activity3.73E-04
11GO:0003999: adenine phosphoribosyltransferase activity5.37E-04
12GO:0005355: glucose transmembrane transporter activity6.38E-04
13GO:0004372: glycine hydroxymethyltransferase activity9.02E-04
14GO:0004605: phosphatidate cytidylyltransferase activity1.10E-03
15GO:0051753: mannan synthase activity1.31E-03
16GO:0005338: nucleotide-sugar transmembrane transporter activity1.54E-03
17GO:0008515: sucrose transmembrane transporter activity3.14E-03
18GO:0047372: acylglycerol lipase activity3.14E-03
19GO:0003777: microtubule motor activity3.20E-03
20GO:0000976: transcription regulatory region sequence-specific DNA binding3.44E-03
21GO:0008081: phosphoric diester hydrolase activity3.76E-03
22GO:0008131: primary amine oxidase activity4.08E-03
23GO:0042973: glucan endo-1,3-beta-D-glucosidase activity4.08E-03
24GO:0008146: sulfotransferase activity4.41E-03
25GO:0051119: sugar transmembrane transporter activity4.41E-03
26GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen5.26E-03
27GO:0000977: RNA polymerase II regulatory region sequence-specific DNA binding5.83E-03
28GO:0016779: nucleotidyltransferase activity6.20E-03
29GO:0030570: pectate lyase activity6.58E-03
30GO:0008017: microtubule binding7.39E-03
31GO:0001085: RNA polymerase II transcription factor binding8.21E-03
32GO:0042802: identical protein binding8.97E-03
33GO:0019901: protein kinase binding9.06E-03
34GO:0016722: oxidoreductase activity, oxidizing metal ions1.14E-02
35GO:0016413: O-acetyltransferase activity1.18E-02
36GO:0004497: monooxygenase activity1.36E-02
37GO:0030247: polysaccharide binding1.38E-02
38GO:0004693: cyclin-dependent protein serine/threonine kinase activity1.59E-02
39GO:0050897: cobalt ion binding1.65E-02
40GO:0030145: manganese ion binding1.65E-02
41GO:0001228: transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding1.65E-02
42GO:0000149: SNARE binding1.87E-02
43GO:0005484: SNAP receptor activity2.10E-02
44GO:0035091: phosphatidylinositol binding2.23E-02
45GO:0004842: ubiquitin-protein transferase activity2.71E-02
46GO:0031625: ubiquitin protein ligase binding2.80E-02
47GO:0045735: nutrient reservoir activity2.93E-02
48GO:0020037: heme binding3.19E-02
49GO:0030599: pectinesterase activity3.20E-02
50GO:0022857: transmembrane transporter activity3.20E-02
51GO:0016829: lyase activity4.15E-02
52GO:0015144: carbohydrate transmembrane transporter activity4.46E-02
53GO:0008565: protein transporter activity4.46E-02
54GO:0005351: sugar:proton symporter activity4.85E-02
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Gene type



Gene DE type