co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT4G28490

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:2001253: regulation of histone H3-K36 trimethylation	0.00E+00
2	GO:0010793: regulation of mRNA export from nucleus	0.00E+00
3	GO:0010499: proteasomal ubiquitin-independent protein catabolic process	0.00E+00
4	GO:0006489: dolichyl diphosphate biosynthetic process	0.00E+00
5	GO:0001881: receptor recycling	0.00E+00
6	GO:0006903: vesicle targeting	0.00E+00
7	GO:0006511: ubiquitin-dependent protein catabolic process	6.55E-12
8	GO:0045454: cell redox homeostasis	1.92E-05
9	GO:0042176: regulation of protein catabolic process	1.01E-04
10	GO:0045899: positive regulation of RNA polymerase II transcriptional preinitiation complex assembly	1.01E-04
11	GO:0030433: ubiquitin-dependent ERAD pathway	1.15E-04
12	GO:0046686: response to cadmium ion	2.11E-04
13	GO:0006623: protein targeting to vacuole	2.51E-04
14	GO:0042964: thioredoxin reduction	2.51E-04
15	GO:0006680: glucosylceramide catabolic process	2.51E-04
16	GO:0035266: meristem growth	2.51E-04
17	GO:0007292: female gamete generation	2.51E-04
18	GO:0097502: mannosylation	2.51E-04
19	GO:0030163: protein catabolic process	3.29E-04
20	GO:0050684: regulation of mRNA processing	5.53E-04
21	GO:0006212: uracil catabolic process	5.53E-04
22	GO:0051788: response to misfolded protein	5.53E-04
23	GO:0019483: beta-alanine biosynthetic process	5.53E-04
24	GO:0015865: purine nucleotide transport	5.53E-04
25	GO:0018345: protein palmitoylation	5.53E-04
26	GO:0048209: regulation of vesicle targeting, to, from or within Golgi	5.53E-04
27	GO:0051252: regulation of RNA metabolic process	5.53E-04
28	GO:0043132: NAD transport	5.53E-04
29	GO:0080183: response to photooxidative stress	5.53E-04
30	GO:0010540: basipetal auxin transport	8.08E-04
31	GO:0060968: regulation of gene silencing	8.99E-04
32	GO:0008333: endosome to lysosome transport	8.99E-04
33	GO:0032784: regulation of DNA-templated transcription, elongation	8.99E-04
34	GO:0055074: calcium ion homeostasis	8.99E-04
35	GO:0010253: UDP-rhamnose biosynthetic process	8.99E-04
36	GO:0044375: regulation of peroxisome size	8.99E-04
37	GO:0045836: positive regulation of meiotic nuclear division	8.99E-04
38	GO:0018342: protein prenylation	8.99E-04
39	GO:0006874: cellular calcium ion homeostasis	1.22E-03
40	GO:0046902: regulation of mitochondrial membrane permeability	1.28E-03
41	GO:0006612: protein targeting to membrane	1.28E-03
42	GO:0006893: Golgi to plasma membrane transport	1.28E-03
43	GO:0048577: negative regulation of short-day photoperiodism, flowering	1.28E-03
44	GO:0015858: nucleoside transport	1.28E-03
45	GO:0000187: activation of MAPK activity	1.28E-03
46	GO:0009311: oligosaccharide metabolic process	1.28E-03
47	GO:0006536: glutamate metabolic process	1.71E-03
48	GO:0000919: cell plate assembly	1.71E-03
49	GO:1990937: xylan acetylation	1.71E-03
50	GO:0051603: proteolysis involved in cellular protein catabolic process	1.77E-03
51	GO:0042147: retrograde transport, endosome to Golgi	1.87E-03
52	GO:0032957: inositol trisphosphate metabolic process	2.19E-03
53	GO:0045927: positive regulation of growth	2.19E-03
54	GO:0046283: anthocyanin-containing compound metabolic process	2.19E-03
55	GO:0097428: protein maturation by iron-sulfur cluster transfer	2.19E-03
56	GO:0006891: intra-Golgi vesicle-mediated transport	2.68E-03
57	GO:0048232: male gamete generation	2.70E-03
58	GO:0043248: proteasome assembly	2.70E-03
59	GO:0010315: auxin efflux	2.70E-03
60	GO:0060918: auxin transport	2.70E-03
61	GO:0003006: developmental process involved in reproduction	2.70E-03
62	GO:0006121: mitochondrial electron transport, succinate to ubiquinone	2.70E-03
63	GO:0048827: phyllome development	2.70E-03
64	GO:0010264: myo-inositol hexakisphosphate biosynthetic process	2.70E-03
65	GO:0052033: pathogen-associated molecular pattern dependent induction by symbiont of host innate immune response	3.24E-03
66	GO:0048280: vesicle fusion with Golgi apparatus	3.24E-03
67	GO:0006120: mitochondrial electron transport, NADH to ubiquinone	3.24E-03
68	GO:0009554: megasporogenesis	3.24E-03
69	GO:0016579: protein deubiquitination	3.65E-03
70	GO:1900056: negative regulation of leaf senescence	3.82E-03
71	GO:0015937: coenzyme A biosynthetic process	3.82E-03
72	GO:0080027: response to herbivore	3.82E-03
73	GO:0048528: post-embryonic root development	3.82E-03
74	GO:0010078: maintenance of root meristem identity	4.44E-03
75	GO:0006102: isocitrate metabolic process	4.44E-03
76	GO:0055085: transmembrane transport	4.55E-03
77	GO:0006888: ER to Golgi vesicle-mediated transport	4.55E-03
78	GO:0060321: acceptance of pollen	5.08E-03
79	GO:0019430: removal of superoxide radicals	5.08E-03
80	GO:0007186: G-protein coupled receptor signaling pathway	5.08E-03
81	GO:0009657: plastid organization	5.08E-03
82	GO:0010204: defense response signaling pathway, resistance gene-independent	5.08E-03
83	GO:0043562: cellular response to nitrogen levels	5.08E-03
84	GO:0006499: N-terminal protein myristoylation	5.56E-03
85	GO:0009407: toxin catabolic process	5.56E-03
86	GO:0046685: response to arsenic-containing substance	5.75E-03
87	GO:0048354: mucilage biosynthetic process involved in seed coat development	6.46E-03
88	GO:0006099: tricarboxylic acid cycle	6.68E-03
89	GO:0051555: flavonol biosynthetic process	7.20E-03
90	GO:0006896: Golgi to vacuole transport	7.20E-03
91	GO:0048829: root cap development	7.20E-03
92	GO:0072593: reactive oxygen species metabolic process	7.96E-03
93	GO:0043085: positive regulation of catalytic activity	7.96E-03
94	GO:0010015: root morphogenesis	7.96E-03
95	GO:0006790: sulfur compound metabolic process	8.75E-03
96	GO:0008361: regulation of cell size	8.75E-03
97	GO:0055046: microgametogenesis	9.57E-03
98	GO:0000165: MAPK cascade	9.99E-03
99	GO:0042742: defense response to bacterium	1.03E-02
100	GO:0006541: glutamine metabolic process	1.04E-02
101	GO:0009933: meristem structural organization	1.04E-02
102	GO:0007034: vacuolar transport	1.04E-02
103	GO:0009266: response to temperature stimulus	1.04E-02
104	GO:0009846: pollen germination	1.04E-02
105	GO:0006813: potassium ion transport	1.11E-02
106	GO:0009225: nucleotide-sugar metabolic process	1.13E-02
107	GO:0007031: peroxisome organization	1.13E-02
108	GO:0010039: response to iron ion	1.13E-02
109	GO:0090351: seedling development	1.13E-02
110	GO:0046854: phosphatidylinositol phosphorylation	1.13E-02
111	GO:0034976: response to endoplasmic reticulum stress	1.22E-02
112	GO:0006487: protein N-linked glycosylation	1.31E-02
113	GO:0048316: seed development	1.36E-02
114	GO:0006468: protein phosphorylation	1.36E-02
115	GO:0051321: meiotic cell cycle	1.50E-02
116	GO:0016998: cell wall macromolecule catabolic process	1.50E-02
117	GO:0009624: response to nematode	1.59E-02
118	GO:0009814: defense response, incompatible interaction	1.60E-02
119	GO:0080092: regulation of pollen tube growth	1.60E-02
120	GO:0071456: cellular response to hypoxia	1.60E-02
121	GO:0010227: floral organ abscission	1.71E-02
122	GO:0006012: galactose metabolic process	1.71E-02
123	GO:0042127: regulation of cell proliferation	1.81E-02
124	GO:0016117: carotenoid biosynthetic process	1.92E-02
125	GO:0008284: positive regulation of cell proliferation	1.92E-02
126	GO:0010051: xylem and phloem pattern formation	2.02E-02
127	GO:0010118: stomatal movement	2.02E-02
128	GO:0048364: root development	2.10E-02
129	GO:0006885: regulation of pH	2.14E-02
130	GO:0006662: glycerol ether metabolic process	2.14E-02
131	GO:0048868: pollen tube development	2.14E-02
132	GO:0048544: recognition of pollen	2.25E-02
133	GO:0010183: pollen tube guidance	2.36E-02
134	GO:0055072: iron ion homeostasis	2.36E-02
135	GO:0019761: glucosinolate biosynthetic process	2.60E-02
136	GO:0009630: gravitropism	2.60E-02
137	GO:0009567: double fertilization forming a zygote and endosperm	2.85E-02
138	GO:0006904: vesicle docking involved in exocytosis	2.97E-02
139	GO:0071805: potassium ion transmembrane transport	2.97E-02
140	GO:0007166: cell surface receptor signaling pathway	3.14E-02
141	GO:0009651: response to salt stress	3.17E-02
142	GO:0009615: response to virus	3.23E-02
143	GO:0006906: vesicle fusion	3.49E-02
144	GO:0009627: systemic acquired resistance	3.49E-02
145	GO:0016049: cell growth	3.76E-02
146	GO:0009817: defense response to fungus, incompatible interaction	3.90E-02
147	GO:0010311: lateral root formation	4.04E-02
148	GO:0048767: root hair elongation	4.04E-02
149	GO:0009416: response to light stimulus	4.07E-02
150	GO:0009834: plant-type secondary cell wall biogenesis	4.18E-02
151	GO:0006811: ion transport	4.18E-02
152	GO:0048527: lateral root development	4.32E-02
153	GO:0009631: cold acclimation	4.32E-02
154	GO:0010043: response to zinc ion	4.32E-02
155	GO:0009910: negative regulation of flower development	4.32E-02
156	GO:0009860: pollen tube growth	4.56E-02
157	GO:0045087: innate immune response	4.61E-02
158	GO:0034599: cellular response to oxidative stress	4.76E-02

Rank	GO Term	Adjusted P value
1	GO:0051670: inulinase activity	0.00E+00
2	GO:0052925: dol-P-Man:Man(5)GlcNAc(2)-PP-Dol alpha-1,3-mannosyltransferase activity	0.00E+00
3	GO:0000033: alpha-1,3-mannosyltransferase activity	0.00E+00
4	GO:0070577: lysine-acetylated histone binding	0.00E+00
5	GO:0044610: FMN transmembrane transporter activity	0.00E+00
6	GO:0004157: dihydropyrimidinase activity	0.00E+00
7	GO:0004573: mannosyl-oligosaccharide glucosidase activity	0.00E+00
8	GO:0016504: peptidase activator activity	0.00E+00
9	GO:0004298: threonine-type endopeptidase activity	3.50E-06
10	GO:0036402: proteasome-activating ATPase activity	1.01E-04
11	GO:0004791: thioredoxin-disulfide reductase activity	2.28E-04
12	GO:0016853: isomerase activity	2.28E-04
13	GO:0003975: UDP-N-acetylglucosamine-dolichyl-phosphate N-acetylglucosaminephosphotransferase activity	2.51E-04
14	GO:0051669: fructan beta-fructosidase activity	2.51E-04
15	GO:0004558: alpha-1,4-glucosidase activity	2.51E-04
16	GO:0048037: cofactor binding	2.51E-04
17	GO:0000386: second spliceosomal transesterification activity	2.51E-04
18	GO:0004348: glucosylceramidase activity	2.51E-04
19	GO:0004633: phosphopantothenoylcysteine decarboxylase activity	2.51E-04
20	GO:0052917: dol-P-Man:Man(7)GlcNAc(2)-PP-Dol alpha-1,6-mannosyltransferase activity	2.51E-04
21	GO:0015230: FAD transmembrane transporter activity	2.51E-04
22	GO:0031219: levanase activity	2.51E-04
23	GO:2001147: camalexin binding	2.51E-04
24	GO:2001227: quercitrin binding	2.51E-04
25	GO:0030234: enzyme regulator activity	4.80E-04
26	GO:0008233: peptidase activity	5.36E-04
27	GO:0051724: NAD transporter activity	5.53E-04
28	GO:0004775: succinate-CoA ligase (ADP-forming) activity	5.53E-04
29	GO:0008428: ribonuclease inhibitor activity	5.53E-04
30	GO:1990585: hydroxyproline O-arabinosyltransferase activity	5.53E-04
31	GO:0050377: UDP-glucose 4,6-dehydratase activity	5.53E-04
32	GO:0051980: iron-nicotianamine transmembrane transporter activity	5.53E-04
33	GO:0008517: folic acid transporter activity	5.53E-04
34	GO:0047443: 4-hydroxy-4-methyl-2-oxoglutarate aldolase activity	5.53E-04
35	GO:0004776: succinate-CoA ligase (GDP-forming) activity	5.53E-04
36	GO:0008963: phospho-N-acetylmuramoyl-pentapeptide-transferase activity	5.53E-04
37	GO:0004566: beta-glucuronidase activity	5.53E-04
38	GO:0015228: coenzyme A transmembrane transporter activity	5.53E-04
39	GO:0008460: dTDP-glucose 4,6-dehydratase activity	5.53E-04
40	GO:0010280: UDP-L-rhamnose synthase activity	5.53E-04
41	GO:0008559: xenobiotic-transporting ATPase activity	5.54E-04
42	GO:0004441: inositol-1,4-bisphosphate 1-phosphatase activity	8.99E-04
43	GO:0052726: inositol-1,3,4-trisphosphate 5-kinase activity	8.99E-04
44	GO:0047325: inositol tetrakisphosphate 1-kinase activity	8.99E-04
45	GO:0017025: TBP-class protein binding	9.03E-04
46	GO:0004970: ionotropic glutamate receptor activity	9.03E-04
47	GO:0005217: intracellular ligand-gated ion channel activity	9.03E-04
48	GO:0004449: isocitrate dehydrogenase (NAD+) activity	1.28E-03
49	GO:0052725: inositol-1,3,4-trisphosphate 6-kinase activity	1.28E-03
50	GO:0004351: glutamate decarboxylase activity	1.28E-03
51	GO:0070628: proteasome binding	1.71E-03
52	GO:0016004: phospholipase activator activity	1.71E-03
53	GO:0009916: alternative oxidase activity	1.71E-03
54	GO:0004301: epoxide hydrolase activity	1.71E-03
55	GO:0047134: protein-disulfide reductase activity	1.87E-03
56	GO:0008948: oxaloacetate decarboxylase activity	2.19E-03
57	GO:0080122: AMP transmembrane transporter activity	2.19E-03
58	GO:0000104: succinate dehydrogenase activity	2.19E-03
59	GO:0005471: ATP:ADP antiporter activity	2.19E-03
60	GO:0004843: thiol-dependent ubiquitin-specific protease activity	2.68E-03
61	GO:1990538: xylan O-acetyltransferase activity	2.70E-03
62	GO:0015035: protein disulfide oxidoreductase activity	2.75E-03
63	GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity	3.24E-03
64	GO:0005347: ATP transmembrane transporter activity	3.24E-03
65	GO:0015217: ADP transmembrane transporter activity	3.24E-03
66	GO:0003824: catalytic activity	3.70E-03
67	GO:0043295: glutathione binding	3.82E-03
68	GO:0004034: aldose 1-epimerase activity	4.44E-03
69	GO:0004708: MAP kinase kinase activity	4.44E-03
70	GO:0030247: polysaccharide binding	4.55E-03
71	GO:0070290: N-acylphosphatidylethanolamine-specific phospholipase D activity	5.08E-03
72	GO:0004630: phospholipase D activity	5.08E-03
73	GO:0000149: SNARE binding	6.98E-03
74	GO:0008047: enzyme activator activity	7.20E-03
75	GO:0004364: glutathione transferase activity	7.91E-03
76	GO:0005089: Rho guanyl-nucleotide exchange factor activity	7.96E-03
77	GO:0008794: arsenate reductase (glutaredoxin) activity	7.96E-03
78	GO:0008327: methyl-CpG binding	7.96E-03
79	GO:0005484: SNAP receptor activity	8.24E-03
80	GO:0015198: oligopeptide transporter activity	8.75E-03
81	GO:0035091: phosphatidylinositol binding	8.92E-03
82	GO:0000287: magnesium ion binding	9.03E-03
83	GO:0004565: beta-galactosidase activity	9.57E-03
84	GO:0015662: ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism	9.57E-03
85	GO:0008061: chitin binding	1.13E-02
86	GO:0004497: monooxygenase activity	1.22E-02
87	GO:0005524: ATP binding	1.36E-02
88	GO:0015079: potassium ion transmembrane transporter activity	1.41E-02
89	GO:0036459: thiol-dependent ubiquitinyl hydrolase activity	1.50E-02
90	GO:0004540: ribonuclease activity	1.50E-02
91	GO:0016874: ligase activity	1.50E-02
92	GO:0003756: protein disulfide isomerase activity	1.81E-02
93	GO:0004499: N,N-dimethylaniline monooxygenase activity	1.81E-02
94	GO:0003727: single-stranded RNA binding	1.81E-02
95	GO:0005451: monovalent cation:proton antiporter activity	2.02E-02
96	GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	2.05E-02
97	GO:0001085: RNA polymerase II transcription factor binding	2.14E-02
98	GO:0005199: structural constituent of cell wall	2.14E-02
99	GO:0009055: electron carrier activity	2.18E-02
100	GO:0015299: solute:proton antiporter activity	2.25E-02
101	GO:0010181: FMN binding	2.25E-02
102	GO:0000977: RNA polymerase II regulatory region sequence-specific DNA binding	2.27E-02
103	GO:0004872: receptor activity	2.36E-02
104	GO:0048038: quinone binding	2.48E-02
105	GO:0008137: NADH dehydrogenase (ubiquinone) activity	2.48E-02
106	GO:0015385: sodium:proton antiporter activity	2.72E-02
107	GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor	2.72E-02
108	GO:0004674: protein serine/threonine kinase activity	2.74E-02
109	GO:0004702: signal transducer, downstream of receptor, with serine/threonine kinase activity	2.97E-02
110	GO:0008237: metallopeptidase activity	2.97E-02
111	GO:0016887: ATPase activity	3.44E-02
112	GO:0042626: ATPase activity, coupled to transmembrane movement of substances	3.49E-02
113	GO:0004683: calmodulin-dependent protein kinase activity	3.62E-02
114	GO:0005096: GTPase activator activity	4.04E-02
115	GO:0016301: kinase activity	4.23E-02
116	GO:0004601: peroxidase activity	4.24E-02
117	GO:0001228: transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding	4.32E-02