Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT4G28460

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0046865: terpenoid transport0.00E+00
2GO:0036503: ERAD pathway0.00E+00
3GO:0072722: response to amitrole0.00E+00
4GO:0010055: atrichoblast differentiation0.00E+00
5GO:0006654: phosphatidic acid biosynthetic process0.00E+00
6GO:0090480: purine nucleotide-sugar transmembrane transport0.00E+00
7GO:0006216: cytidine catabolic process0.00E+00
8GO:0009312: oligosaccharide biosynthetic process0.00E+00
9GO:0043620: regulation of DNA-templated transcription in response to stress0.00E+00
10GO:0051707: response to other organism6.17E-06
11GO:0006623: protein targeting to vacuole7.46E-05
12GO:0052033: pathogen-associated molecular pattern dependent induction by symbiont of host innate immune response3.37E-04
13GO:0009814: defense response, incompatible interaction3.69E-04
14GO:0071446: cellular response to salicylic acid stimulus4.34E-04
15GO:0042759: long-chain fatty acid biosynthetic process4.45E-04
16GO:0019673: GDP-mannose metabolic process4.45E-04
17GO:0042868: antisense RNA metabolic process4.45E-04
18GO:0032107: regulation of response to nutrient levels4.45E-04
19GO:0031123: RNA 3'-end processing4.45E-04
20GO:0099132: ATP hydrolysis coupled cation transmembrane transport4.45E-04
21GO:0098789: pre-mRNA cleavage required for polyadenylation4.45E-04
22GO:0009700: indole phytoalexin biosynthetic process4.45E-04
23GO:1900150: regulation of defense response to fungus5.41E-04
24GO:0015780: nucleotide-sugar transport7.90E-04
25GO:0090332: stomatal closure9.32E-04
26GO:0048268: clathrin coat assembly9.32E-04
27GO:0006996: organelle organization9.61E-04
28GO:0009156: ribonucleoside monophosphate biosynthetic process9.61E-04
29GO:0015709: thiosulfate transport9.61E-04
30GO:0071422: succinate transmembrane transport9.61E-04
31GO:0046939: nucleotide phosphorylation9.61E-04
32GO:0080151: positive regulation of salicylic acid mediated signaling pathway9.61E-04
33GO:1902066: regulation of cell wall pectin metabolic process9.61E-04
34GO:0042853: L-alanine catabolic process9.61E-04
35GO:0010541: acropetal auxin transport9.61E-04
36GO:0019725: cellular homeostasis9.61E-04
37GO:0006790: sulfur compound metabolic process1.43E-03
38GO:0009627: systemic acquired resistance1.49E-03
39GO:1901672: positive regulation of systemic acquired resistance1.57E-03
40GO:0010186: positive regulation of cellular defense response1.57E-03
41GO:0015783: GDP-fucose transport1.57E-03
42GO:0006517: protein deglycosylation1.57E-03
43GO:2001009: regulation of plant-type cell wall cellulose biosynthetic process1.57E-03
44GO:0010272: response to silver ion1.57E-03
45GO:0015692: lead ion transport1.57E-03
46GO:0060968: regulation of gene silencing1.57E-03
47GO:0080168: abscisic acid transport1.57E-03
48GO:0048586: regulation of long-day photoperiodism, flowering1.57E-03
49GO:0032922: circadian regulation of gene expression1.57E-03
50GO:0061158: 3'-UTR-mediated mRNA destabilization1.57E-03
51GO:0017006: protein-tetrapyrrole linkage1.57E-03
52GO:0042351: 'de novo' GDP-L-fucose biosynthetic process1.57E-03
53GO:0006626: protein targeting to mitochondrion1.62E-03
54GO:0042742: defense response to bacterium2.00E-03
55GO:0046854: phosphatidylinositol phosphorylation2.05E-03
56GO:0009225: nucleotide-sugar metabolic process2.05E-03
57GO:0046513: ceramide biosynthetic process2.27E-03
58GO:0006515: misfolded or incompletely synthesized protein catabolic process2.27E-03
59GO:0032877: positive regulation of DNA endoreduplication2.27E-03
60GO:0055089: fatty acid homeostasis2.27E-03
61GO:0000187: activation of MAPK activity2.27E-03
62GO:0015729: oxaloacetate transport2.27E-03
63GO:0009584: detection of visible light2.27E-03
64GO:0072334: UDP-galactose transmembrane transport2.27E-03
65GO:0010731: protein glutathionylation2.27E-03
66GO:0010104: regulation of ethylene-activated signaling pathway2.27E-03
67GO:1902290: positive regulation of defense response to oomycetes2.27E-03
68GO:0006516: glycoprotein catabolic process2.27E-03
69GO:0009165: nucleotide biosynthetic process3.05E-03
70GO:0060548: negative regulation of cell death3.05E-03
71GO:0033320: UDP-D-xylose biosynthetic process3.05E-03
72GO:0033356: UDP-L-arabinose metabolic process3.05E-03
73GO:0010188: response to microbial phytotoxin3.05E-03
74GO:0071456: cellular response to hypoxia3.37E-03
75GO:0010150: leaf senescence3.58E-03
76GO:0071368: cellular response to cytokinin stimulus3.90E-03
77GO:0031365: N-terminal protein amino acid modification3.90E-03
78GO:0009435: NAD biosynthetic process3.90E-03
79GO:0009247: glycolipid biosynthetic process3.90E-03
80GO:0098719: sodium ion import across plasma membrane3.90E-03
81GO:0071423: malate transmembrane transport3.90E-03
82GO:0009617: response to bacterium4.69E-03
83GO:0009751: response to salicylic acid4.80E-03
84GO:0009972: cytidine deamination4.83E-03
85GO:0035435: phosphate ion transmembrane transport4.83E-03
86GO:0048827: phyllome development4.83E-03
87GO:0010264: myo-inositol hexakisphosphate biosynthetic process4.83E-03
88GO:0042732: D-xylose metabolic process4.83E-03
89GO:0045736: negative regulation of cyclin-dependent protein serine/threonine kinase activity4.83E-03
90GO:0060918: auxin transport4.83E-03
91GO:0045040: protein import into mitochondrial outer membrane4.83E-03
92GO:0006139: nucleobase-containing compound metabolic process4.83E-03
93GO:0042176: regulation of protein catabolic process4.83E-03
94GO:0002238: response to molecule of fungal origin4.83E-03
95GO:0080113: regulation of seed growth5.83E-03
96GO:0010183: pollen tube guidance5.84E-03
97GO:0010193: response to ozone6.25E-03
98GO:0045995: regulation of embryonic development6.89E-03
99GO:0046470: phosphatidylcholine metabolic process6.89E-03
100GO:0007050: cell cycle arrest6.89E-03
101GO:1900056: negative regulation of leaf senescence6.89E-03
102GO:0080186: developmental vegetative growth6.89E-03
103GO:0000122: negative regulation of transcription from RNA polymerase II promoter6.89E-03
104GO:2000014: regulation of endosperm development6.89E-03
105GO:0008272: sulfate transport6.89E-03
106GO:0048766: root hair initiation8.02E-03
107GO:0006102: isocitrate metabolic process8.02E-03
108GO:0018401: peptidyl-proline hydroxylation to 4-hydroxy-L-proline8.02E-03
109GO:0009850: auxin metabolic process8.02E-03
110GO:0019375: galactolipid biosynthetic process8.02E-03
111GO:0051607: defense response to virus8.56E-03
112GO:0009615: response to virus9.07E-03
113GO:2000031: regulation of salicylic acid mediated signaling pathway9.21E-03
114GO:0006002: fructose 6-phosphate metabolic process9.21E-03
115GO:0010120: camalexin biosynthetic process9.21E-03
116GO:0009816: defense response to bacterium, incompatible interaction9.60E-03
117GO:0015031: protein transport9.79E-03
118GO:0048589: developmental growth1.05E-02
119GO:0019432: triglyceride biosynthetic process1.05E-02
120GO:0010112: regulation of systemic acquired resistance1.05E-02
121GO:0008202: steroid metabolic process1.18E-02
122GO:0051453: regulation of intracellular pH1.18E-02
123GO:1900426: positive regulation of defense response to bacterium1.18E-02
124GO:0009862: systemic acquired resistance, salicylic acid mediated signaling pathway1.18E-02
125GO:0008219: cell death1.19E-02
126GO:0043069: negative regulation of programmed cell death1.31E-02
127GO:0006499: N-terminal protein myristoylation1.31E-02
128GO:0006032: chitin catabolic process1.31E-02
129GO:0048527: lateral root development1.38E-02
130GO:0009631: cold acclimation1.38E-02
131GO:0000724: double-strand break repair via homologous recombination1.44E-02
132GO:0009089: lysine biosynthetic process via diaminopimelate1.46E-02
133GO:0000272: polysaccharide catabolic process1.46E-02
134GO:0045087: innate immune response1.51E-02
135GO:0016925: protein sumoylation1.60E-02
136GO:0006890: retrograde vesicle-mediated transport, Golgi to ER1.60E-02
137GO:2000028: regulation of photoperiodism, flowering1.75E-02
138GO:0050826: response to freezing1.75E-02
139GO:0032436: positive regulation of proteasomal ubiquitin-dependent protein catabolic process1.75E-02
140GO:0010102: lateral root morphogenesis1.75E-02
141GO:0006897: endocytosis1.80E-02
142GO:0007034: vacuolar transport1.91E-02
143GO:0002237: response to molecule of bacterial origin1.91E-02
144GO:0008152: metabolic process2.02E-02
145GO:0000209: protein polyubiquitination2.03E-02
146GO:0010030: positive regulation of seed germination2.07E-02
147GO:0070588: calcium ion transmembrane transport2.07E-02
148GO:0010053: root epidermal cell differentiation2.07E-02
149GO:0007030: Golgi organization2.07E-02
150GO:0008643: carbohydrate transport2.11E-02
151GO:0009636: response to toxic substance2.19E-02
152GO:0006071: glycerol metabolic process2.24E-02
153GO:0006636: unsaturated fatty acid biosynthetic process2.24E-02
154GO:0006855: drug transmembrane transport2.28E-02
155GO:0000165: MAPK cascade2.36E-02
156GO:0042787: protein ubiquitination involved in ubiquitin-dependent protein catabolic process2.36E-02
157GO:0009116: nucleoside metabolic process2.41E-02
158GO:0006289: nucleotide-excision repair2.41E-02
159GO:0007017: microtubule-based process2.59E-02
160GO:0006508: proteolysis2.71E-02
161GO:0016998: cell wall macromolecule catabolic process2.77E-02
162GO:0006334: nucleosome assembly2.77E-02
163GO:0031408: oxylipin biosynthetic process2.77E-02
164GO:0048278: vesicle docking2.77E-02
165GO:0080092: regulation of pollen tube growth2.95E-02
166GO:0010017: red or far-red light signaling pathway2.95E-02
167GO:2000022: regulation of jasmonic acid mediated signaling pathway2.95E-02
168GO:0009625: response to insect3.14E-02
169GO:0006012: galactose metabolic process3.14E-02
170GO:0010082: regulation of root meristem growth3.14E-02
171GO:0009723: response to ethylene3.27E-02
172GO:0009626: plant-type hypersensitive response3.31E-02
173GO:0009306: protein secretion3.33E-02
174GO:0009620: response to fungus3.42E-02
175GO:0042147: retrograde transport, endosome to Golgi3.53E-02
176GO:0008033: tRNA processing3.73E-02
177GO:0042391: regulation of membrane potential3.73E-02
178GO:0010051: xylem and phloem pattern formation3.73E-02
179GO:0009958: positive gravitropism3.94E-02
180GO:0009960: endosperm development3.94E-02
181GO:0061025: membrane fusion4.14E-02
182GO:0006814: sodium ion transport4.14E-02
183GO:0048544: recognition of pollen4.14E-02
184GO:0048825: cotyledon development4.36E-02
185GO:0009749: response to glucose4.36E-02
186GO:0000302: response to reactive oxygen species4.57E-02
187GO:0006891: intra-Golgi vesicle-mediated transport4.57E-02
188GO:0002229: defense response to oomycetes4.57E-02
189GO:0006886: intracellular protein transport4.62E-02
190GO:0006952: defense response4.78E-02
191GO:0031047: gene silencing by RNA4.79E-02
192GO:0016032: viral process4.79E-02
RankGO TermAdjusted P value
1GO:0034338: short-chain carboxylesterase activity0.00E+00
2GO:0019205: nucleobase-containing compound kinase activity0.00E+00
3GO:0051766: inositol trisphosphate kinase activity0.00E+00
4GO:0044318: L-aspartate:fumarate oxidoreductase activity0.00E+00
5GO:0055105: ubiquitin-protein transferase inhibitor activity0.00E+00
6GO:0008455: alpha-1,6-mannosylglycoprotein 2-beta-N-acetylglucosaminyltransferase activity0.00E+00
7GO:0008734: L-aspartate oxidase activity0.00E+00
8GO:0051670: inulinase activity0.00E+00
9GO:0000224: peptide-N4-(N-acetyl-beta-glucosaminyl)asparagine amidase activity0.00E+00
10GO:0051765: inositol tetrakisphosphate kinase activity0.00E+00
11GO:0016312: inositol bisphosphate phosphatase activity0.00E+00
12GO:0047844: deoxycytidine deaminase activity0.00E+00
13GO:0010298: dihydrocamalexic acid decarboxylase activity0.00E+00
14GO:0004441: inositol-1,4-bisphosphate 1-phosphatase activity3.02E-05
15GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity3.37E-04
16GO:0102425: myricetin 3-O-glucosyltransferase activity4.34E-04
17GO:0102360: daphnetin 3-O-glucosyltransferase activity4.34E-04
18GO:0010285: L,L-diaminopimelate aminotransferase activity4.45E-04
19GO:0008440: inositol-1,4,5-trisphosphate 3-kinase activity4.45E-04
20GO:0000824: inositol tetrakisphosphate 3-kinase activity4.45E-04
21GO:0047326: inositol tetrakisphosphate 5-kinase activity4.45E-04
22GO:0000823: inositol-1,4,5-trisphosphate 6-kinase activity4.45E-04
23GO:0051669: fructan beta-fructosidase activity4.45E-04
24GO:0008446: GDP-mannose 4,6-dehydratase activity4.45E-04
25GO:0031219: levanase activity4.45E-04
26GO:0046481: digalactosyldiacylglycerol synthase activity4.45E-04
27GO:0004708: MAP kinase kinase activity5.41E-04
28GO:0047893: flavonol 3-O-glucosyltransferase activity5.41E-04
29GO:0008194: UDP-glycosyltransferase activity9.58E-04
30GO:0015117: thiosulfate transmembrane transporter activity9.61E-04
31GO:0080045: quercetin 3'-O-glucosyltransferase activity9.61E-04
32GO:0050291: sphingosine N-acyltransferase activity9.61E-04
33GO:0009883: red or far-red light photoreceptor activity9.61E-04
34GO:0004809: tRNA (guanine-N2-)-methyltransferase activity9.61E-04
35GO:0008805: carbon-monoxide oxygenase activity9.61E-04
36GO:0004338: glucan exo-1,3-beta-glucosidase activity9.61E-04
37GO:1901677: phosphate transmembrane transporter activity9.61E-04
38GO:0004568: chitinase activity1.08E-03
39GO:0005545: 1-phosphatidylinositol binding1.08E-03
40GO:0004702: signal transducer, downstream of receptor, with serine/threonine kinase activity1.12E-03
41GO:0005457: GDP-fucose transmembrane transporter activity1.57E-03
42GO:0000030: mannosyltransferase activity1.57E-03
43GO:0042409: caffeoyl-CoA O-methyltransferase activity1.57E-03
44GO:0005310: dicarboxylic acid transmembrane transporter activity1.57E-03
45GO:0015141: succinate transmembrane transporter activity1.57E-03
46GO:0008020: G-protein coupled photoreceptor activity1.57E-03
47GO:0052725: inositol-1,3,4-trisphosphate 6-kinase activity2.27E-03
48GO:0017077: oxidative phosphorylation uncoupler activity2.27E-03
49GO:0004749: ribose phosphate diphosphokinase activity2.27E-03
50GO:0015131: oxaloacetate transmembrane transporter activity2.27E-03
51GO:0035529: NADH pyrophosphatase activity2.27E-03
52GO:0019201: nucleotide kinase activity2.27E-03
53GO:0035250: UDP-galactosyltransferase activity2.27E-03
54GO:0004021: L-alanine:2-oxoglutarate aminotransferase activity2.27E-03
55GO:0010178: IAA-amino acid conjugate hydrolase activity2.27E-03
56GO:0004449: isocitrate dehydrogenase (NAD+) activity2.27E-03
57GO:0001075: transcription factor activity, RNA polymerase II core promoter sequence-specific binding involved in preinitiation complex assembly3.05E-03
58GO:0035251: UDP-glucosyltransferase activity3.08E-03
59GO:0046872: metal ion binding3.10E-03
60GO:0015297: antiporter activity3.33E-03
61GO:0004040: amidase activity3.90E-03
62GO:0031386: protein tag3.90E-03
63GO:0047631: ADP-ribose diphosphatase activity3.90E-03
64GO:0070696: transmembrane receptor protein serine/threonine kinase binding3.90E-03
65GO:0005459: UDP-galactose transmembrane transporter activity3.90E-03
66GO:0045300: acyl-[acyl-carrier-protein] desaturase activity3.90E-03
67GO:0004623: phospholipase A2 activity3.90E-03
68GO:0048040: UDP-glucuronate decarboxylase activity4.83E-03
69GO:0047714: galactolipase activity4.83E-03
70GO:0004861: cyclin-dependent protein serine/threonine kinase inhibitor activity4.83E-03
71GO:0000210: NAD+ diphosphatase activity4.83E-03
72GO:0035252: UDP-xylosyltransferase activity4.83E-03
73GO:0030276: clathrin binding5.06E-03
74GO:0070403: NAD+ binding5.83E-03
75GO:0004017: adenylate kinase activity5.83E-03
76GO:0004126: cytidine deaminase activity5.83E-03
77GO:0003730: mRNA 3'-UTR binding5.83E-03
78GO:0004144: diacylglycerol O-acyltransferase activity5.83E-03
79GO:0004656: procollagen-proline 4-dioxygenase activity5.83E-03
80GO:0005261: cation channel activity5.83E-03
81GO:0004620: phospholipase activity6.89E-03
82GO:0005338: nucleotide-sugar transmembrane transporter activity6.89E-03
83GO:0008235: metalloexopeptidase activity6.89E-03
84GO:0009881: photoreceptor activity6.89E-03
85GO:0003872: 6-phosphofructokinase activity6.89E-03
86GO:0015140: malate transmembrane transporter activity6.89E-03
87GO:0008320: protein transmembrane transporter activity6.89E-03
88GO:0080043: quercetin 3-O-glucosyltransferase activity6.98E-03
89GO:0080044: quercetin 7-O-glucosyltransferase activity6.98E-03
90GO:0022857: transmembrane transporter activity7.25E-03
91GO:0004034: aldose 1-epimerase activity8.02E-03
92GO:0004525: ribonuclease III activity8.02E-03
93GO:0005544: calcium-dependent phospholipid binding8.02E-03
94GO:0008142: oxysterol binding9.21E-03
95GO:0004630: phospholipase D activity9.21E-03
96GO:0008970: phosphatidylcholine 1-acylhydrolase activity9.21E-03
97GO:0070290: N-acylphosphatidylethanolamine-specific phospholipase D activity9.21E-03
98GO:0008375: acetylglucosaminyltransferase activity1.01E-02
99GO:0004806: triglyceride lipase activity1.07E-02
100GO:0031490: chromatin DNA binding1.18E-02
101GO:0030234: enzyme regulator activity1.31E-02
102GO:0008171: O-methyltransferase activity1.31E-02
103GO:0004222: metalloendopeptidase activity1.31E-02
104GO:0004871: signal transducer activity1.36E-02
105GO:0004177: aminopeptidase activity1.46E-02
106GO:0008559: xenobiotic-transporting ATPase activity1.46E-02
107GO:0047372: acylglycerol lipase activity1.46E-02
108GO:0015386: potassium:proton antiporter activity1.46E-02
109GO:0016706: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors1.51E-02
110GO:0015116: sulfate transmembrane transporter activity1.60E-02
111GO:0000049: tRNA binding1.60E-02
112GO:0000155: phosphorelay sensor kinase activity1.75E-02
113GO:0005388: calcium-transporting ATPase activity1.75E-02
114GO:0031624: ubiquitin conjugating enzyme binding1.91E-02
115GO:0042973: glucan endo-1,3-beta-D-glucosidase activity1.91E-02
116GO:0030552: cAMP binding2.07E-02
117GO:0004867: serine-type endopeptidase inhibitor activity2.07E-02
118GO:0030553: cGMP binding2.07E-02
119GO:0008061: chitin binding2.07E-02
120GO:0003712: transcription cofactor activity2.07E-02
121GO:0031418: L-ascorbic acid binding2.41E-02
122GO:0008134: transcription factor binding2.41E-02
123GO:0001046: core promoter sequence-specific DNA binding2.41E-02
124GO:0005216: ion channel activity2.59E-02
125GO:0016298: lipase activity2.72E-02
126GO:0008408: 3'-5' exonuclease activity2.77E-02
127GO:0043531: ADP binding3.06E-02
128GO:0008810: cellulase activity3.14E-02
129GO:0004499: N,N-dimethylaniline monooxygenase activity3.33E-02
130GO:0047134: protein-disulfide reductase activity3.53E-02
131GO:0005102: receptor binding3.53E-02
132GO:0016301: kinase activity3.58E-02
133GO:0004674: protein serine/threonine kinase activity3.65E-02
134GO:0005249: voltage-gated potassium channel activity3.73E-02
135GO:0030551: cyclic nucleotide binding3.73E-02
136GO:0004527: exonuclease activity3.94E-02
137GO:0003713: transcription coactivator activity3.94E-02
138GO:0004791: thioredoxin-disulfide reductase activity4.14E-02
139GO:0016853: isomerase activity4.14E-02
140GO:0010181: FMN binding4.14E-02
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Gene type



Gene DE type