co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT4G28180

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0044774: mitotic DNA integrity checkpoint	0.00E+00
2	GO:0090322: regulation of superoxide metabolic process	0.00E+00
3	GO:1901528: hydrogen peroxide mediated signaling pathway involved in stomatal movement	0.00E+00
4	GO:0080127: fruit septum development	0.00E+00
5	GO:0046486: glycerolipid metabolic process	0.00E+00
6	GO:0019988: charged-tRNA amino acid modification	0.00E+00
7	GO:0090615: mitochondrial mRNA processing	0.00E+00
8	GO:0000492: box C/D snoRNP assembly	0.00E+00
9	GO:0010323: negative regulation of isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway	0.00E+00
10	GO:0045014: negative regulation of transcription by glucose	0.00E+00
11	GO:0000819: sister chromatid segregation	0.00E+00
12	GO:0000491: small nucleolar ribonucleoprotein complex assembly	0.00E+00
13	GO:0006518: peptide metabolic process	1.24E-05
14	GO:0006364: rRNA processing	2.99E-05
15	GO:0042127: regulation of cell proliferation	1.78E-04
16	GO:0006401: RNA catabolic process	2.10E-04
17	GO:0006353: DNA-templated transcription, termination	2.66E-04
18	GO:1905039: carboxylic acid transmembrane transport	2.75E-04
19	GO:1905200: gibberellic acid transmembrane transport	2.75E-04
20	GO:0033206: meiotic cytokinesis	2.75E-04
21	GO:0080112: seed growth	2.75E-04
22	GO:1900865: chloroplast RNA modification	4.67E-04
23	GO:0009658: chloroplast organization	4.78E-04
24	GO:0048829: root cap development	5.46E-04
25	GO:0016441: posttranscriptional gene silencing	5.46E-04
26	GO:0048731: system development	6.04E-04
27	GO:0006650: glycerophospholipid metabolic process	6.04E-04
28	GO:2000071: regulation of defense response by callose deposition	6.04E-04
29	GO:1901529: positive regulation of anion channel activity	6.04E-04
30	GO:0010569: regulation of double-strand break repair via homologous recombination	6.04E-04
31	GO:0010588: cotyledon vascular tissue pattern formation	8.15E-04
32	GO:0009793: embryo development ending in seed dormancy	8.97E-04
33	GO:1901527: abscisic acid-activated signaling pathway involved in stomatal movement	9.79E-04
34	GO:0046168: glycerol-3-phosphate catabolic process	9.79E-04
35	GO:0040008: regulation of growth	1.12E-03
36	GO:0045017: glycerolipid biosynthetic process	1.40E-03
37	GO:0010371: regulation of gibberellin biosynthetic process	1.40E-03
38	GO:0009102: biotin biosynthetic process	1.40E-03
39	GO:0007276: gamete generation	1.40E-03
40	GO:0043481: anthocyanin accumulation in tissues in response to UV light	1.40E-03
41	GO:0006072: glycerol-3-phosphate metabolic process	1.40E-03
42	GO:0003333: amino acid transmembrane transport	1.52E-03
43	GO:2000022: regulation of jasmonic acid mediated signaling pathway	1.66E-03
44	GO:0006808: regulation of nitrogen utilization	1.87E-03
45	GO:1900864: mitochondrial RNA modification	1.87E-03
46	GO:0006221: pyrimidine nucleotide biosynthetic process	1.87E-03
47	GO:0008033: tRNA processing	2.30E-03
48	GO:0010501: RNA secondary structure unwinding	2.30E-03
49	GO:0016120: carotene biosynthetic process	2.39E-03
50	GO:0080110: sporopollenin biosynthetic process	2.39E-03
51	GO:0016558: protein import into peroxisome matrix	2.39E-03
52	GO:0016123: xanthophyll biosynthetic process	2.39E-03
53	GO:0009734: auxin-activated signaling pathway	2.52E-03
54	GO:0048316: seed development	2.58E-03
55	GO:0060918: auxin transport	2.95E-03
56	GO:0042793: transcription from plastid promoter	2.95E-03
57	GO:0003006: developmental process involved in reproduction	2.95E-03
58	GO:0009643: photosynthetic acclimation	2.95E-03
59	GO:0016554: cytidine to uridine editing	2.95E-03
60	GO:0080156: mitochondrial mRNA modification	3.06E-03
61	GO:0010583: response to cyclopentenone	3.26E-03
62	GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway	3.40E-03
63	GO:2000033: regulation of seed dormancy process	3.55E-03
64	GO:0009942: longitudinal axis specification	3.55E-03
65	GO:0000079: regulation of cyclin-dependent protein serine/threonine kinase activity	3.55E-03
66	GO:0010310: regulation of hydrogen peroxide metabolic process	3.55E-03
67	GO:0000082: G1/S transition of mitotic cell cycle	4.19E-03
68	GO:0010098: suspensor development	4.19E-03
69	GO:0010444: guard mother cell differentiation	4.19E-03
70	GO:0000712: resolution of meiotic recombination intermediates	4.19E-03
71	GO:0010374: stomatal complex development	4.19E-03
72	GO:1900056: negative regulation of leaf senescence	4.19E-03
73	GO:0042255: ribosome assembly	4.86E-03
74	GO:0046620: regulation of organ growth	4.86E-03
75	GO:0009938: negative regulation of gibberellic acid mediated signaling pathway	4.86E-03
76	GO:0006402: mRNA catabolic process	4.86E-03
77	GO:0010492: maintenance of shoot apical meristem identity	4.86E-03
78	GO:0052543: callose deposition in cell wall	4.86E-03
79	GO:0009787: regulation of abscisic acid-activated signaling pathway	4.86E-03
80	GO:0009642: response to light intensity	4.86E-03
81	GO:0009733: response to auxin	5.04E-03
82	GO:0010233: phloem transport	5.57E-03
83	GO:0010497: plasmodesmata-mediated intercellular transport	5.57E-03
84	GO:0019430: removal of superoxide radicals	5.57E-03
85	GO:0010052: guard cell differentiation	5.57E-03
86	GO:0032544: plastid translation	5.57E-03
87	GO:0007389: pattern specification process	5.57E-03
88	GO:0009827: plant-type cell wall modification	5.57E-03
89	GO:0048507: meristem development	6.31E-03
90	GO:0000373: Group II intron splicing	6.31E-03
91	GO:0048589: developmental growth	6.31E-03
92	GO:0010218: response to far red light	6.35E-03
93	GO:0006865: amino acid transport	6.98E-03
94	GO:0031425: chloroplast RNA processing	7.09E-03
95	GO:0009867: jasmonic acid mediated signaling pathway	7.30E-03
96	GO:0006535: cysteine biosynthetic process from serine	7.90E-03
97	GO:0009641: shade avoidance	7.90E-03
98	GO:0006949: syncytium formation	7.90E-03
99	GO:0006259: DNA metabolic process	7.90E-03
100	GO:0015770: sucrose transport	8.74E-03
101	GO:0006265: DNA topological change	8.74E-03
102	GO:1903507: negative regulation of nucleic acid-templated transcription	8.74E-03
103	GO:0009750: response to fructose	8.74E-03
104	GO:0048765: root hair cell differentiation	8.74E-03
105	GO:0009682: induced systemic resistance	8.74E-03
106	GO:0009744: response to sucrose	9.42E-03
107	GO:0010582: floral meristem determinacy	9.61E-03
108	GO:0010152: pollen maturation	9.61E-03
109	GO:0006312: mitotic recombination	9.61E-03
110	GO:0012501: programmed cell death	9.61E-03
111	GO:0010102: lateral root morphogenesis	1.05E-02
112	GO:0010020: chloroplast fission	1.14E-02
113	GO:0009887: animal organ morphogenesis	1.14E-02
114	GO:0048768: root hair cell tip growth	1.14E-02
115	GO:0048467: gynoecium development	1.14E-02
116	GO:0031347: regulation of defense response	1.14E-02
117	GO:0009901: anther dehiscence	1.24E-02
118	GO:0080188: RNA-directed DNA methylation	1.24E-02
119	GO:0006636: unsaturated fatty acid biosynthetic process	1.34E-02
120	GO:0009863: salicylic acid mediated signaling pathway	1.44E-02
121	GO:0010187: negative regulation of seed germination	1.44E-02
122	GO:2000377: regulation of reactive oxygen species metabolic process	1.44E-02
123	GO:0019344: cysteine biosynthetic process	1.44E-02
124	GO:0048367: shoot system development	1.56E-02
125	GO:0051301: cell division	1.59E-02
126	GO:0010431: seed maturation	1.65E-02
127	GO:0009740: gibberellic acid mediated signaling pathway	1.71E-02
128	GO:0030245: cellulose catabolic process	1.76E-02
129	GO:0009624: response to nematode	1.82E-02
130	GO:0009831: plant-type cell wall modification involved in multidimensional cell growth	1.88E-02
131	GO:0051726: regulation of cell cycle	1.93E-02
132	GO:0010584: pollen exine formation	1.99E-02
133	GO:0048443: stamen development	1.99E-02
134	GO:0042335: cuticle development	2.23E-02
135	GO:0080022: primary root development	2.23E-02
136	GO:0010087: phloem or xylem histogenesis	2.23E-02
137	GO:0010118: stomatal movement	2.23E-02
138	GO:0010305: leaf vascular tissue pattern formation	2.35E-02
139	GO:0009741: response to brassinosteroid	2.35E-02
140	GO:0007059: chromosome segregation	2.47E-02
141	GO:0006397: mRNA processing	2.49E-02
142	GO:0009749: response to glucose	2.60E-02
143	GO:0008654: phospholipid biosynthetic process	2.60E-02
144	GO:0002229: defense response to oomycetes	2.73E-02
145	GO:0006635: fatty acid beta-oxidation	2.73E-02
146	GO:0006351: transcription, DNA-templated	2.83E-02
147	GO:0031047: gene silencing by RNA	2.86E-02
148	GO:0032502: developmental process	2.86E-02
149	GO:0030163: protein catabolic process	2.99E-02
150	GO:0006464: cellular protein modification process	3.13E-02
151	GO:0009828: plant-type cell wall loosening	3.13E-02
152	GO:0019760: glucosinolate metabolic process	3.13E-02
153	GO:0045490: pectin catabolic process	3.14E-02
154	GO:0009451: RNA modification	3.22E-02
155	GO:0009739: response to gibberellin	3.51E-02
156	GO:0010029: regulation of seed germination	3.69E-02
157	GO:0009627: systemic acquired resistance	3.84E-02
158	GO:0015995: chlorophyll biosynthetic process	3.99E-02
159	GO:0006355: regulation of transcription, DNA-templated	4.05E-02
160	GO:0006468: protein phosphorylation	4.13E-02
161	GO:0016311: dephosphorylation	4.14E-02
162	GO:0006811: ion transport	4.59E-02
163	GO:0009555: pollen development	4.79E-02

Rank	GO Term	Adjusted P value
1	GO:0004835: tubulin-tyrosine ligase activity	0.00E+00
2	GO:0004015: adenosylmethionine-8-amino-7-oxononanoate transaminase activity	0.00E+00
3	GO:0043399: tRNA A64-2'-O-ribosylphosphate transferase activity	0.00E+00
4	GO:0016763: transferase activity, transferring pentosyl groups	0.00E+00
5	GO:0008859: exoribonuclease II activity	0.00E+00
6	GO:0004141: dethiobiotin synthase activity	0.00E+00
7	GO:0003723: RNA binding	2.07E-05
8	GO:0016901: oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor	2.75E-04
9	GO:0004654: polyribonucleotide nucleotidyltransferase activity	2.75E-04
10	GO:1905201: gibberellin transmembrane transporter activity	2.75E-04
11	GO:0042389: omega-3 fatty acid desaturase activity	6.04E-04
12	GO:0004809: tRNA (guanine-N2-)-methyltransferase activity	6.04E-04
13	GO:0000175: 3'-5'-exoribonuclease activity	8.15E-04
14	GO:0004367: glycerol-3-phosphate dehydrogenase [NAD+] activity	9.79E-04
15	GO:0009041: uridylate kinase activity	1.40E-03
16	GO:0003916: DNA topoisomerase activity	1.40E-03
17	GO:0004519: endonuclease activity	1.60E-03
18	GO:0030570: pectate lyase activity	1.81E-03
19	GO:0010011: auxin binding	1.87E-03
20	GO:0010328: auxin influx transmembrane transporter activity	1.87E-03
21	GO:0004784: superoxide dismutase activity	2.95E-03
22	GO:0003968: RNA-directed 5'-3' RNA polymerase activity	2.95E-03
23	GO:0008026: ATP-dependent helicase activity	3.37E-03
24	GO:0004124: cysteine synthase activity	3.55E-03
25	GO:0030515: snoRNA binding	4.19E-03
26	GO:0004714: transmembrane receptor protein tyrosine kinase activity	4.86E-03
27	GO:0004004: ATP-dependent RNA helicase activity	5.20E-03
28	GO:0016717: oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water	5.57E-03
29	GO:0003918: DNA topoisomerase type II (ATP-hydrolyzing) activity	5.57E-03
30	GO:0003724: RNA helicase activity	5.57E-03
31	GO:0000989: transcription factor activity, transcription factor binding	6.31E-03
32	GO:0004222: metalloendopeptidase activity	6.35E-03
33	GO:0003700: transcription factor activity, sequence-specific DNA binding	7.96E-03
34	GO:0008515: sucrose transmembrane transporter activity	8.74E-03
35	GO:0003725: double-stranded RNA binding	1.05E-02
36	GO:0015293: symporter activity	1.06E-02
37	GO:0051119: sugar transmembrane transporter activity	1.24E-02
38	GO:0003712: transcription cofactor activity	1.24E-02
39	GO:0004190: aspartic-type endopeptidase activity	1.24E-02
40	GO:0015171: amino acid transmembrane transporter activity	1.41E-02
41	GO:0003714: transcription corepressor activity	1.44E-02
42	GO:0008094: DNA-dependent ATPase activity	1.65E-02
43	GO:0004540: ribonuclease activity	1.65E-02
44	GO:0043565: sequence-specific DNA binding	1.66E-02
45	GO:0016874: ligase activity	1.71E-02
46	GO:0003779: actin binding	1.76E-02
47	GO:0008810: cellulase activity	1.88E-02
48	GO:0042803: protein homodimerization activity	1.92E-02
49	GO:0003727: single-stranded RNA binding	1.99E-02
50	GO:0005102: receptor binding	2.11E-02
51	GO:0019843: rRNA binding	2.28E-02
52	GO:0005524: ATP binding	2.33E-02
53	GO:0016538: cyclin-dependent protein serine/threonine kinase regulator activity	2.35E-02
54	GO:0050662: coenzyme binding	2.47E-02
55	GO:0004672: protein kinase activity	2.49E-02
56	GO:0003676: nucleic acid binding	2.50E-02
57	GO:0030170: pyridoxal phosphate binding	2.53E-02
58	GO:0000977: RNA polymerase II regulatory region sequence-specific DNA binding	2.59E-02
59	GO:0019901: protein kinase binding	2.60E-02
60	GO:0048038: quinone binding	2.73E-02
61	GO:0016791: phosphatase activity	3.13E-02
62	GO:0005200: structural constituent of cytoskeleton	3.27E-02
63	GO:0008289: lipid binding	3.56E-02
64	GO:0016887: ATPase activity	4.06E-02
65	GO:0008757: S-adenosylmethionine-dependent methyltransferase activity	4.14E-02
66	GO:0003677: DNA binding	4.35E-02
67	GO:0005096: GTPase activator activity	4.44E-02
68	GO:0005215: transporter activity	4.56E-02
69	GO:0004693: cyclin-dependent protein serine/threonine kinase activity	4.59E-02
70	GO:0008168: methyltransferase activity	4.66E-02