GO Enrichment Analysis of Co-expressed Genes with
AT4G28070
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0019988: charged-tRNA amino acid modification | 0.00E+00 |
| 2 | GO:0070829: heterochromatin maintenance | 0.00E+00 |
| 3 | GO:0090615: mitochondrial mRNA processing | 0.00E+00 |
| 4 | GO:0071360: cellular response to exogenous dsRNA | 0.00E+00 |
| 5 | GO:1900370: positive regulation of RNA interference | 0.00E+00 |
| 6 | GO:0010323: negative regulation of isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway | 0.00E+00 |
| 7 | GO:0045014: negative regulation of transcription by glucose | 0.00E+00 |
| 8 | GO:0071951: conversion of methionyl-tRNA to N-formyl-methionyl-tRNA | 0.00E+00 |
| 9 | GO:0035563: positive regulation of chromatin binding | 0.00E+00 |
| 10 | GO:0090627: plant epidermal cell differentiation | 0.00E+00 |
| 11 | GO:0090322: regulation of superoxide metabolic process | 0.00E+00 |
| 12 | GO:1901528: hydrogen peroxide mediated signaling pathway involved in stomatal movement | 0.00E+00 |
| 13 | GO:0080127: fruit septum development | 0.00E+00 |
| 14 | GO:0060966: regulation of gene silencing by RNA | 0.00E+00 |
| 15 | GO:0009102: biotin biosynthetic process | 2.08E-05 |
| 16 | GO:0040008: regulation of growth | 1.16E-04 |
| 17 | GO:0006401: RNA catabolic process | 1.62E-04 |
| 18 | GO:0010305: leaf vascular tissue pattern formation | 1.76E-04 |
| 19 | GO:0046620: regulation of organ growth | 2.06E-04 |
| 20 | GO:0006430: lysyl-tRNA aminoacylation | 2.32E-04 |
| 21 | GO:1900368: regulation of RNA interference | 2.32E-04 |
| 22 | GO:0080156: mitochondrial mRNA modification | 2.37E-04 |
| 23 | GO:0009658: chloroplast organization | 3.03E-04 |
| 24 | GO:1900865: chloroplast RNA modification | 3.67E-04 |
| 25 | GO:0009734: auxin-activated signaling pathway | 3.80E-04 |
| 26 | GO:0009793: embryo development ending in seed dormancy | 4.64E-04 |
| 27 | GO:1900111: positive regulation of histone H3-K9 dimethylation | 5.15E-04 |
| 28 | GO:1901529: positive regulation of anion channel activity | 5.15E-04 |
| 29 | GO:2000071: regulation of defense response by callose deposition | 5.15E-04 |
| 30 | GO:0010541: acropetal auxin transport | 5.15E-04 |
| 31 | GO:0010540: basipetal auxin transport | 7.26E-04 |
| 32 | GO:0030029: actin filament-based process | 8.37E-04 |
| 33 | GO:0032776: DNA methylation on cytosine | 8.37E-04 |
| 34 | GO:1901527: abscisic acid-activated signaling pathway involved in stomatal movement | 8.37E-04 |
| 35 | GO:0060968: regulation of gene silencing | 8.37E-04 |
| 36 | GO:0006518: peptide metabolic process | 8.37E-04 |
| 37 | GO:0009733: response to auxin | 8.99E-04 |
| 38 | GO:0060964: regulation of gene silencing by miRNA | 1.19E-03 |
| 39 | GO:0010371: regulation of gibberellin biosynthetic process | 1.19E-03 |
| 40 | GO:0009152: purine ribonucleotide biosynthetic process | 1.19E-03 |
| 41 | GO:0043481: anthocyanin accumulation in tissues in response to UV light | 1.19E-03 |
| 42 | GO:0006364: rRNA processing | 1.47E-03 |
| 43 | GO:0006479: protein methylation | 1.59E-03 |
| 44 | GO:1900864: mitochondrial RNA modification | 1.59E-03 |
| 45 | GO:0006221: pyrimidine nucleotide biosynthetic process | 1.59E-03 |
| 46 | GO:0009956: radial pattern formation | 1.59E-03 |
| 47 | GO:0008033: tRNA processing | 1.81E-03 |
| 48 | GO:0016123: xanthophyll biosynthetic process | 2.03E-03 |
| 49 | GO:0016120: carotene biosynthetic process | 2.03E-03 |
| 50 | GO:0080110: sporopollenin biosynthetic process | 2.03E-03 |
| 51 | GO:0016131: brassinosteroid metabolic process | 2.03E-03 |
| 52 | GO:0016558: protein import into peroxisome matrix | 2.03E-03 |
| 53 | GO:0009959: negative gravitropism | 2.50E-03 |
| 54 | GO:0016554: cytidine to uridine editing | 2.50E-03 |
| 55 | GO:0009913: epidermal cell differentiation | 2.50E-03 |
| 56 | GO:0060918: auxin transport | 2.50E-03 |
| 57 | GO:0042793: transcription from plastid promoter | 2.50E-03 |
| 58 | GO:0003006: developmental process involved in reproduction | 2.50E-03 |
| 59 | GO:0009643: photosynthetic acclimation | 2.50E-03 |
| 60 | GO:0006014: D-ribose metabolic process | 2.50E-03 |
| 61 | GO:0000079: regulation of cyclin-dependent protein serine/threonine kinase activity | 3.00E-03 |
| 62 | GO:0010310: regulation of hydrogen peroxide metabolic process | 3.00E-03 |
| 63 | GO:0009942: longitudinal axis specification | 3.00E-03 |
| 64 | GO:0009058: biosynthetic process | 3.26E-03 |
| 65 | GO:1900056: negative regulation of leaf senescence | 3.54E-03 |
| 66 | GO:0010098: suspensor development | 3.54E-03 |
| 67 | GO:0009787: regulation of abscisic acid-activated signaling pathway | 4.10E-03 |
| 68 | GO:0009642: response to light intensity | 4.10E-03 |
| 69 | GO:0042255: ribosome assembly | 4.10E-03 |
| 70 | GO:0006353: DNA-templated transcription, termination | 4.10E-03 |
| 71 | GO:0006402: mRNA catabolic process | 4.10E-03 |
| 72 | GO:0009827: plant-type cell wall modification | 4.70E-03 |
| 73 | GO:0019430: removal of superoxide radicals | 4.70E-03 |
| 74 | GO:0007389: pattern specification process | 4.70E-03 |
| 75 | GO:0048507: meristem development | 5.32E-03 |
| 76 | GO:0048589: developmental growth | 5.32E-03 |
| 77 | GO:0031425: chloroplast RNA processing | 5.97E-03 |
| 78 | GO:0016571: histone methylation | 5.97E-03 |
| 79 | GO:0016573: histone acetylation | 5.97E-03 |
| 80 | GO:0048829: root cap development | 6.65E-03 |
| 81 | GO:0009641: shade avoidance | 6.65E-03 |
| 82 | GO:0006949: syncytium formation | 6.65E-03 |
| 83 | GO:0006535: cysteine biosynthetic process from serine | 6.65E-03 |
| 84 | GO:0030422: production of siRNA involved in RNA interference | 6.65E-03 |
| 85 | GO:0048765: root hair cell differentiation | 7.35E-03 |
| 86 | GO:0046856: phosphatidylinositol dephosphorylation | 7.35E-03 |
| 87 | GO:0009682: induced systemic resistance | 7.35E-03 |
| 88 | GO:0009750: response to fructose | 7.35E-03 |
| 89 | GO:0009926: auxin polar transport | 7.36E-03 |
| 90 | GO:0012501: programmed cell death | 8.08E-03 |
| 91 | GO:0010582: floral meristem determinacy | 8.08E-03 |
| 92 | GO:0010152: pollen maturation | 8.08E-03 |
| 93 | GO:0010588: cotyledon vascular tissue pattern formation | 8.84E-03 |
| 94 | GO:0010102: lateral root morphogenesis | 8.84E-03 |
| 95 | GO:0009266: response to temperature stimulus | 9.62E-03 |
| 96 | GO:0048768: root hair cell tip growth | 9.62E-03 |
| 97 | GO:0048467: gynoecium development | 9.62E-03 |
| 98 | GO:0010020: chloroplast fission | 9.62E-03 |
| 99 | GO:0009933: meristem structural organization | 9.62E-03 |
| 100 | GO:0009825: multidimensional cell growth | 1.04E-02 |
| 101 | GO:0080188: RNA-directed DNA methylation | 1.04E-02 |
| 102 | GO:0006636: unsaturated fatty acid biosynthetic process | 1.13E-02 |
| 103 | GO:0048367: shoot system development | 1.21E-02 |
| 104 | GO:0019344: cysteine biosynthetic process | 1.21E-02 |
| 105 | GO:0006338: chromatin remodeling | 1.21E-02 |
| 106 | GO:0048316: seed development | 1.21E-02 |
| 107 | GO:0080147: root hair cell development | 1.21E-02 |
| 108 | GO:2000377: regulation of reactive oxygen species metabolic process | 1.21E-02 |
| 109 | GO:0006418: tRNA aminoacylation for protein translation | 1.30E-02 |
| 110 | GO:0016569: covalent chromatin modification | 1.33E-02 |
| 111 | GO:0010431: seed maturation | 1.39E-02 |
| 112 | GO:0006306: DNA methylation | 1.39E-02 |
| 113 | GO:0003333: amino acid transmembrane transport | 1.39E-02 |
| 114 | GO:0030245: cellulose catabolic process | 1.48E-02 |
| 115 | GO:2000022: regulation of jasmonic acid mediated signaling pathway | 1.48E-02 |
| 116 | GO:0009831: plant-type cell wall modification involved in multidimensional cell growth | 1.57E-02 |
| 117 | GO:0006355: regulation of transcription, DNA-templated | 1.58E-02 |
| 118 | GO:0010584: pollen exine formation | 1.67E-02 |
| 119 | GO:0048443: stamen development | 1.67E-02 |
| 120 | GO:0006284: base-excision repair | 1.67E-02 |
| 121 | GO:0006397: mRNA processing | 1.82E-02 |
| 122 | GO:0010087: phloem or xylem histogenesis | 1.87E-02 |
| 123 | GO:0010118: stomatal movement | 1.87E-02 |
| 124 | GO:0042335: cuticle development | 1.87E-02 |
| 125 | GO:0080022: primary root development | 1.87E-02 |
| 126 | GO:0010501: RNA secondary structure unwinding | 1.87E-02 |
| 127 | GO:0009845: seed germination | 1.92E-02 |
| 128 | GO:0009741: response to brassinosteroid | 1.97E-02 |
| 129 | GO:0010268: brassinosteroid homeostasis | 1.97E-02 |
| 130 | GO:0071472: cellular response to salt stress | 1.97E-02 |
| 131 | GO:0048825: cotyledon development | 2.18E-02 |
| 132 | GO:0009749: response to glucose | 2.18E-02 |
| 133 | GO:0019252: starch biosynthetic process | 2.18E-02 |
| 134 | GO:0002229: defense response to oomycetes | 2.29E-02 |
| 135 | GO:0006635: fatty acid beta-oxidation | 2.29E-02 |
| 136 | GO:0032502: developmental process | 2.40E-02 |
| 137 | GO:0010583: response to cyclopentenone | 2.40E-02 |
| 138 | GO:0030163: protein catabolic process | 2.51E-02 |
| 139 | GO:0009639: response to red or far red light | 2.62E-02 |
| 140 | GO:0009828: plant-type cell wall loosening | 2.62E-02 |
| 141 | GO:0015995: chlorophyll biosynthetic process | 3.34E-02 |
| 142 | GO:0016311: dephosphorylation | 3.47E-02 |
| 143 | GO:0009416: response to light stimulus | 3.54E-02 |
| 144 | GO:0048481: plant ovule development | 3.59E-02 |
| 145 | GO:0006351: transcription, DNA-templated | 3.80E-02 |
| 146 | GO:0010218: response to far red light | 3.85E-02 |
| 147 | GO:0009910: negative regulation of flower development | 3.98E-02 |
| 148 | GO:0006865: amino acid transport | 4.12E-02 |
| 149 | GO:0045893: positive regulation of transcription, DNA-templated | 4.19E-02 |
| 150 | GO:0009867: jasmonic acid mediated signaling pathway | 4.25E-02 |
| 151 | GO:0030001: metal ion transport | 4.67E-02 |
| 152 | GO:0080167: response to karrikin | 4.69E-02 |
| 153 | GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway | 4.85E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0043399: tRNA A64-2'-O-ribosylphosphate transferase activity | 0.00E+00 |
| 2 | GO:0016763: transferase activity, transferring pentosyl groups | 0.00E+00 |
| 3 | GO:0008859: exoribonuclease II activity | 0.00E+00 |
| 4 | GO:0004141: dethiobiotin synthase activity | 0.00E+00 |
| 5 | GO:0004479: methionyl-tRNA formyltransferase activity | 0.00E+00 |
| 6 | GO:0008710: 8-amino-7-oxononanoate synthase activity | 0.00E+00 |
| 7 | GO:0004015: adenosylmethionine-8-amino-7-oxononanoate transaminase activity | 0.00E+00 |
| 8 | GO:0003723: RNA binding | 7.77E-05 |
| 9 | GO:0016901: oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor | 2.32E-04 |
| 10 | GO:0004654: polyribonucleotide nucleotidyltransferase activity | 2.32E-04 |
| 11 | GO:0004016: adenylate cyclase activity | 2.32E-04 |
| 12 | GO:0004824: lysine-tRNA ligase activity | 2.32E-04 |
| 13 | GO:0016274: protein-arginine N-methyltransferase activity | 2.32E-04 |
| 14 | GO:0008395: steroid hydroxylase activity | 2.32E-04 |
| 15 | GO:0042389: omega-3 fatty acid desaturase activity | 5.15E-04 |
| 16 | GO:0004809: tRNA (guanine-N2-)-methyltransferase activity | 5.15E-04 |
| 17 | GO:0000175: 3'-5'-exoribonuclease activity | 6.45E-04 |
| 18 | GO:0016742: hydroxymethyl-, formyl- and related transferase activity | 8.37E-04 |
| 19 | GO:0008864: formyltetrahydrofolate deformylase activity | 8.37E-04 |
| 20 | GO:0004519: endonuclease activity | 1.04E-03 |
| 21 | GO:0009041: uridylate kinase activity | 1.19E-03 |
| 22 | GO:0010011: auxin binding | 1.59E-03 |
| 23 | GO:0010328: auxin influx transmembrane transporter activity | 1.59E-03 |
| 24 | GO:0008725: DNA-3-methyladenine glycosylase activity | 2.03E-03 |
| 25 | GO:0004784: superoxide dismutase activity | 2.50E-03 |
| 26 | GO:0034485: phosphatidylinositol-3,4,5-trisphosphate 5-phosphatase activity | 2.50E-03 |
| 27 | GO:0004124: cysteine synthase activity | 3.00E-03 |
| 28 | GO:0004747: ribokinase activity | 3.00E-03 |
| 29 | GO:0005200: structural constituent of cytoskeleton | 3.08E-03 |
| 30 | GO:0030170: pyridoxal phosphate binding | 3.48E-03 |
| 31 | GO:0008865: fructokinase activity | 4.10E-03 |
| 32 | GO:0016717: oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water | 4.70E-03 |
| 33 | GO:0003677: DNA binding | 5.30E-03 |
| 34 | GO:0004439: phosphatidylinositol-4,5-bisphosphate 5-phosphatase activity | 8.08E-03 |
| 35 | GO:0003725: double-stranded RNA binding | 8.84E-03 |
| 36 | GO:0008266: poly(U) RNA binding | 9.62E-03 |
| 37 | GO:0004190: aspartic-type endopeptidase activity | 1.04E-02 |
| 38 | GO:0003712: transcription cofactor activity | 1.04E-02 |
| 39 | GO:0003779: actin binding | 1.38E-02 |
| 40 | GO:0004540: ribonuclease activity | 1.39E-02 |
| 41 | GO:0042803: protein homodimerization activity | 1.40E-02 |
| 42 | GO:0003676: nucleic acid binding | 1.49E-02 |
| 43 | GO:0008810: cellulase activity | 1.57E-02 |
| 44 | GO:0003727: single-stranded RNA binding | 1.67E-02 |
| 45 | GO:0004812: aminoacyl-tRNA ligase activity | 1.77E-02 |
| 46 | GO:0003700: transcription factor activity, sequence-specific DNA binding | 1.95E-02 |
| 47 | GO:0000977: RNA polymerase II regulatory region sequence-specific DNA binding | 2.02E-02 |
| 48 | GO:0050662: coenzyme binding | 2.07E-02 |
| 49 | GO:0019901: protein kinase binding | 2.18E-02 |
| 50 | GO:0048038: quinone binding | 2.29E-02 |
| 51 | GO:0008289: lipid binding | 2.62E-02 |
| 52 | GO:0016791: phosphatase activity | 2.62E-02 |
| 53 | GO:0008483: transaminase activity | 2.74E-02 |
| 54 | GO:0004004: ATP-dependent RNA helicase activity | 3.34E-02 |
| 55 | GO:0008168: methyltransferase activity | 3.65E-02 |
| 56 | GO:0004222: metalloendopeptidase activity | 3.85E-02 |
| 57 | GO:0004693: cyclin-dependent protein serine/threonine kinase activity | 3.85E-02 |
| 58 | GO:0003697: single-stranded DNA binding | 4.25E-02 |
| 59 | GO:0003993: acid phosphatase activity | 4.39E-02 |