Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT4G27595

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0002103: endonucleolytic cleavage of tetracistronic rRNA transcript (SSU-rRNA, LSU-rRNA, 4.5S-rRNA, 5S-rRNA)0.00E+00
2GO:0046486: glycerolipid metabolic process0.00E+00
3GO:0019988: charged-tRNA amino acid modification0.00E+00
4GO:0090615: mitochondrial mRNA processing0.00E+00
5GO:0000492: box C/D snoRNP assembly0.00E+00
6GO:0042794: rRNA transcription from plastid promoter0.00E+00
7GO:0010323: negative regulation of isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway0.00E+00
8GO:0045014: negative regulation of transcription by glucose0.00E+00
9GO:0000491: small nucleolar ribonucleoprotein complex assembly0.00E+00
10GO:0010059: positive regulation of atrichoblast fate specification0.00E+00
11GO:0090627: plant epidermal cell differentiation0.00E+00
12GO:0002949: tRNA threonylcarbamoyladenosine modification0.00E+00
13GO:0009606: tropism0.00E+00
14GO:0090322: regulation of superoxide metabolic process0.00E+00
15GO:1901528: hydrogen peroxide mediated signaling pathway involved in stomatal movement0.00E+00
16GO:0080127: fruit septum development0.00E+00
17GO:0042793: transcription from plastid promoter1.06E-05
18GO:0009658: chloroplast organization3.98E-05
19GO:0042255: ribosome assembly4.10E-05
20GO:0046620: regulation of organ growth4.10E-05
21GO:0006353: DNA-templated transcription, termination4.10E-05
22GO:0006518: peptide metabolic process4.97E-05
23GO:0040008: regulation of growth6.03E-05
24GO:0010305: leaf vascular tissue pattern formation1.22E-04
25GO:0009734: auxin-activated signaling pathway1.56E-04
26GO:0048497: maintenance of floral organ identity2.73E-04
27GO:0006364: rRNA processing3.26E-04
28GO:0009733: response to auxin3.50E-04
29GO:0009913: epidermal cell differentiation3.83E-04
30GO:0010063: positive regulation of trichoblast fate specification5.87E-04
31GO:0033206: meiotic cytokinesis5.87E-04
32GO:0034757: negative regulation of iron ion transport5.87E-04
33GO:0019294: keto-3-deoxy-D-manno-octulosonic acid biosynthetic process5.87E-04
34GO:0072684: mitochondrial tRNA 3'-trailer cleavage, endonucleolytic5.87E-04
35GO:0080112: seed growth5.87E-04
36GO:1905039: carboxylic acid transmembrane transport5.87E-04
37GO:1905200: gibberellic acid transmembrane transport5.87E-04
38GO:1903866: palisade mesophyll development5.87E-04
39GO:0006401: RNA catabolic process6.51E-04
40GO:0042127: regulation of cell proliferation7.84E-04
41GO:0008033: tRNA processing9.57E-04
42GO:0007389: pattern specification process9.85E-04
43GO:0009926: auxin polar transport1.08E-03
44GO:0009662: etioplast organization1.26E-03
45GO:1900033: negative regulation of trichome patterning1.26E-03
46GO:0080009: mRNA methylation1.26E-03
47GO:2000123: positive regulation of stomatal complex development1.26E-03
48GO:1901529: positive regulation of anion channel activity1.26E-03
49GO:0009967: positive regulation of signal transduction1.26E-03
50GO:0019374: galactolipid metabolic process1.26E-03
51GO:0010569: regulation of double-strand break repair via homologous recombination1.26E-03
52GO:0048731: system development1.26E-03
53GO:0006650: glycerophospholipid metabolic process1.26E-03
54GO:0010271: regulation of chlorophyll catabolic process1.26E-03
55GO:2000071: regulation of defense response by callose deposition1.26E-03
56GO:0010541: acropetal auxin transport1.26E-03
57GO:0080156: mitochondrial mRNA modification1.37E-03
58GO:1900865: chloroplast RNA modification1.39E-03
59GO:0032502: developmental process1.49E-03
60GO:0048829: root cap development1.62E-03
61GO:0006949: syncytium formation1.62E-03
62GO:0009828: plant-type cell wall loosening1.76E-03
63GO:0042780: tRNA 3'-end processing2.07E-03
64GO:0034414: tRNA 3'-trailer cleavage, endonucleolytic2.07E-03
65GO:1901527: abscisic acid-activated signaling pathway involved in stomatal movement2.07E-03
66GO:0046168: glycerol-3-phosphate catabolic process2.07E-03
67GO:0080117: secondary growth2.07E-03
68GO:0090391: granum assembly2.07E-03
69GO:0045037: protein import into chloroplast stroma2.16E-03
70GO:0048367: shoot system development2.32E-03
71GO:0010588: cotyledon vascular tissue pattern formation2.45E-03
72GO:0010540: basipetal auxin transport2.77E-03
73GO:0045017: glycerolipid biosynthetic process3.01E-03
74GO:0010371: regulation of gibberellin biosynthetic process3.01E-03
75GO:0010071: root meristem specification3.01E-03
76GO:0009102: biotin biosynthetic process3.01E-03
77GO:0010239: chloroplast mRNA processing3.01E-03
78GO:0007276: gamete generation3.01E-03
79GO:0043481: anthocyanin accumulation in tissues in response to UV light3.01E-03
80GO:0006072: glycerol-3-phosphate metabolic process3.01E-03
81GO:0010306: rhamnogalacturonan II biosynthetic process3.01E-03
82GO:0009793: embryo development ending in seed dormancy3.04E-03
83GO:0080188: RNA-directed DNA methylation3.11E-03
84GO:2000377: regulation of reactive oxygen species metabolic process3.85E-03
85GO:0080147: root hair cell development3.85E-03
86GO:0009956: radial pattern formation4.06E-03
87GO:0006808: regulation of nitrogen utilization4.06E-03
88GO:0006479: protein methylation4.06E-03
89GO:0048629: trichome patterning4.06E-03
90GO:1900864: mitochondrial RNA modification4.06E-03
91GO:0006221: pyrimidine nucleotide biosynthetic process4.06E-03
92GO:2000038: regulation of stomatal complex development4.06E-03
93GO:0003333: amino acid transmembrane transport4.68E-03
94GO:2000022: regulation of jasmonic acid mediated signaling pathway5.12E-03
95GO:0016123: xanthophyll biosynthetic process5.21E-03
96GO:0010375: stomatal complex patterning5.21E-03
97GO:0009247: glycolipid biosynthetic process5.21E-03
98GO:0080110: sporopollenin biosynthetic process5.21E-03
99GO:0016131: brassinosteroid metabolic process5.21E-03
100GO:0016120: carotene biosynthetic process5.21E-03
101GO:0009831: plant-type cell wall modification involved in multidimensional cell growth5.60E-03
102GO:0071215: cellular response to abscisic acid stimulus5.60E-03
103GO:0009643: photosynthetic acclimation6.46E-03
104GO:0006014: D-ribose metabolic process6.46E-03
105GO:0009959: negative gravitropism6.46E-03
106GO:0016554: cytidine to uridine editing6.46E-03
107GO:0060918: auxin transport6.46E-03
108GO:0010315: auxin efflux6.46E-03
109GO:1902456: regulation of stomatal opening6.46E-03
110GO:0048831: regulation of shoot system development6.46E-03
111GO:0003006: developmental process involved in reproduction6.46E-03
112GO:0009451: RNA modification7.04E-03
113GO:0010087: phloem or xylem histogenesis7.14E-03
114GO:0010118: stomatal movement7.14E-03
115GO:0006351: transcription, DNA-templated7.62E-03
116GO:0009664: plant-type cell wall organization7.79E-03
117GO:0048509: regulation of meristem development7.81E-03
118GO:0000079: regulation of cyclin-dependent protein serine/threonine kinase activity7.81E-03
119GO:0010310: regulation of hydrogen peroxide metabolic process7.81E-03
120GO:0009955: adaxial/abaxial pattern specification7.81E-03
121GO:0000462: maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)7.81E-03
122GO:2000033: regulation of seed dormancy process7.81E-03
123GO:0009942: longitudinal axis specification7.81E-03
124GO:0008380: RNA splicing8.90E-03
125GO:0048825: cotyledon development8.91E-03
126GO:0010103: stomatal complex morphogenesis9.25E-03
127GO:0006955: immune response9.25E-03
128GO:1900056: negative regulation of leaf senescence9.25E-03
129GO:0048437: floral organ development9.25E-03
130GO:0032259: methylation9.52E-03
131GO:0009416: response to light stimulus9.52E-03
132GO:0010583: response to cyclopentenone1.02E-02
133GO:0010492: maintenance of shoot apical meristem identity1.08E-02
134GO:0052543: callose deposition in cell wall1.08E-02
135GO:0009938: negative regulation of gibberellic acid mediated signaling pathway1.08E-02
136GO:0009787: regulation of abscisic acid-activated signaling pathway1.08E-02
137GO:0006402: mRNA catabolic process1.08E-02
138GO:0009642: response to light intensity1.08E-02
139GO:0048766: root hair initiation1.08E-02
140GO:0019375: galactolipid biosynthetic process1.08E-02
141GO:0032544: plastid translation1.24E-02
142GO:0009827: plant-type cell wall modification1.24E-02
143GO:0019430: removal of superoxide radicals1.24E-02
144GO:0010233: phloem transport1.24E-02
145GO:0010497: plasmodesmata-mediated intercellular transport1.24E-02
146GO:0009657: plastid organization1.24E-02
147GO:0006396: RNA processing1.39E-02
148GO:0000373: Group II intron splicing1.41E-02
149GO:0048589: developmental growth1.41E-02
150GO:0000902: cell morphogenesis1.41E-02
151GO:0048507: meristem development1.41E-02
152GO:0010029: regulation of seed germination1.47E-02
153GO:0006355: regulation of transcription, DNA-templated1.54E-02
154GO:0042761: very long-chain fatty acid biosynthetic process1.59E-02
155GO:0006349: regulation of gene expression by genetic imprinting1.59E-02
156GO:0031425: chloroplast RNA processing1.59E-02
157GO:0045036: protein targeting to chloroplast1.77E-02
158GO:0009641: shade avoidance1.77E-02
159GO:0016441: posttranscriptional gene silencing1.77E-02
160GO:0010048: vernalization response1.77E-02
161GO:0006535: cysteine biosynthetic process from serine1.77E-02
162GO:0048481: plant ovule development1.82E-02
163GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway1.92E-02
164GO:0009750: response to fructose1.96E-02
165GO:0048765: root hair cell differentiation1.96E-02
166GO:0046856: phosphatidylinositol dephosphorylation1.96E-02
167GO:0009682: induced systemic resistance1.96E-02
168GO:0015770: sucrose transport1.96E-02
169GO:1903507: negative regulation of nucleic acid-templated transcription1.96E-02
170GO:0009845: seed germination1.97E-02
171GO:0010218: response to far red light2.00E-02
172GO:0012501: programmed cell death2.16E-02
173GO:0010152: pollen maturation2.16E-02
174GO:0010582: floral meristem determinacy2.16E-02
175GO:0006865: amino acid transport2.20E-02
176GO:0009867: jasmonic acid mediated signaling pathway2.31E-02
177GO:0010102: lateral root morphogenesis2.37E-02
178GO:0009691: cytokinin biosynthetic process2.37E-02
179GO:0009887: animal organ morphogenesis2.58E-02
180GO:0048768: root hair cell tip growth2.58E-02
181GO:0048467: gynoecium development2.58E-02
182GO:0010020: chloroplast fission2.58E-02
183GO:0009933: meristem structural organization2.58E-02
184GO:0006270: DNA replication initiation2.58E-02
185GO:0030001: metal ion transport2.63E-02
186GO:0009825: multidimensional cell growth2.80E-02
187GO:0009901: anther dehiscence2.80E-02
188GO:0006636: unsaturated fatty acid biosynthetic process3.03E-02
189GO:0009739: response to gibberellin3.08E-02
190GO:0016042: lipid catabolic process3.12E-02
191GO:0019344: cysteine biosynthetic process3.26E-02
192GO:0009863: salicylic acid mediated signaling pathway3.26E-02
193GO:0010187: negative regulation of seed germination3.26E-02
194GO:0006397: mRNA processing3.46E-02
195GO:0048364: root development3.46E-02
196GO:0010073: meristem maintenance3.50E-02
197GO:0019953: sexual reproduction3.50E-02
198GO:0031347: regulation of defense response3.60E-02
199GO:0006260: DNA replication3.60E-02
200GO:0016998: cell wall macromolecule catabolic process3.74E-02
201GO:0010431: seed maturation3.74E-02
202GO:0030245: cellulose catabolic process3.99E-02
203GO:0009736: cytokinin-activated signaling pathway4.00E-02
204GO:0010082: regulation of root meristem growth4.25E-02
205GO:0009826: unidimensional cell growth4.39E-02
206GO:0006468: protein phosphorylation4.41E-02
207GO:0010584: pollen exine formation4.51E-02
208GO:0048443: stamen development4.51E-02
209GO:0010091: trichome branching4.51E-02
210GO:0006284: base-excision repair4.51E-02
211GO:0070417: cellular response to cold4.77E-02
RankGO TermAdjusted P value
1GO:0004015: adenosylmethionine-8-amino-7-oxononanoate transaminase activity0.00E+00
2GO:0043399: tRNA A64-2'-O-ribosylphosphate transferase activity0.00E+00
3GO:0016763: transferase activity, transferring pentosyl groups0.00E+00
4GO:0008859: exoribonuclease II activity0.00E+00
5GO:0004141: dethiobiotin synthase activity0.00E+00
6GO:0071633: dihydroceramidase activity0.00E+00
7GO:0061711: N(6)-L-threonylcarbamoyladenine synthase0.00E+00
8GO:0003723: RNA binding1.74E-05
9GO:0008173: RNA methyltransferase activity5.74E-05
10GO:0003727: single-stranded RNA binding7.88E-05
11GO:0008168: methyltransferase activity2.00E-04
12GO:0004519: endonuclease activity3.01E-04
13GO:0016901: oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor5.87E-04
14GO:0004654: polyribonucleotide nucleotidyltransferase activity5.87E-04
15GO:0004016: adenylate cyclase activity5.87E-04
16GO:1905201: gibberellin transmembrane transporter activity5.87E-04
17GO:0042834: peptidoglycan binding5.87E-04
18GO:0008676: 3-deoxy-8-phosphooctulonate synthase activity5.87E-04
19GO:0016422: mRNA (2'-O-methyladenosine-N6-)-methyltransferase activity5.87E-04
20GO:0016274: protein-arginine N-methyltransferase activity5.87E-04
21GO:0052381: tRNA dimethylallyltransferase activity5.87E-04
22GO:0008395: steroid hydroxylase activity5.87E-04
23GO:0019843: rRNA binding9.29E-04
24GO:0042389: omega-3 fatty acid desaturase activity1.26E-03
25GO:0004809: tRNA (guanine-N2-)-methyltransferase activity1.26E-03
26GO:0046509: 1,2-diacylglycerol 3-beta-galactosyltransferase activity1.26E-03
27GO:0000179: rRNA (adenine-N6,N6-)-dimethyltransferase activity1.26E-03
28GO:0005078: MAP-kinase scaffold activity1.26E-03
29GO:0009884: cytokinin receptor activity1.26E-03
30GO:0016805: dipeptidase activity2.07E-03
31GO:0005034: osmosensor activity2.07E-03
32GO:0004367: glycerol-3-phosphate dehydrogenase [NAD+] activity2.07E-03
33GO:0017150: tRNA dihydrouridine synthase activity2.07E-03
34GO:0042781: 3'-tRNA processing endoribonuclease activity2.07E-03
35GO:0000175: 3'-5'-exoribonuclease activity2.45E-03
36GO:0042973: glucan endo-1,3-beta-D-glucosidase activity2.77E-03
37GO:0001872: (1->3)-beta-D-glucan binding3.01E-03
38GO:0009041: uridylate kinase activity3.01E-03
39GO:0043565: sequence-specific DNA binding3.12E-03
40GO:0004222: metalloendopeptidase activity3.51E-03
41GO:0003700: transcription factor activity, sequence-specific DNA binding4.04E-03
42GO:0010011: auxin binding4.06E-03
43GO:0010328: auxin influx transmembrane transporter activity4.06E-03
44GO:0004930: G-protein coupled receptor activity4.06E-03
45GO:0008725: DNA-3-methyladenine glycosylase activity5.21E-03
46GO:0004888: transmembrane signaling receptor activity5.21E-03
47GO:0030570: pectate lyase activity5.60E-03
48GO:0008289: lipid binding5.91E-03
49GO:0003688: DNA replication origin binding6.46E-03
50GO:0004784: superoxide dismutase activity6.46E-03
51GO:0034485: phosphatidylinositol-3,4,5-trisphosphate 5-phosphatase activity6.46E-03
52GO:0042803: protein homodimerization activity7.73E-03
53GO:0019900: kinase binding7.81E-03
54GO:0004124: cysteine synthase activity7.81E-03
55GO:0004747: ribokinase activity7.81E-03
56GO:0019901: protein kinase binding8.91E-03
57GO:0003690: double-stranded DNA binding8.91E-03
58GO:0030515: snoRNA binding9.25E-03
59GO:0008865: fructokinase activity1.08E-02
60GO:0003724: RNA helicase activity1.24E-02
61GO:0016717: oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water1.24E-02
62GO:0016788: hydrolase activity, acting on ester bonds1.36E-02
63GO:0000989: transcription factor activity, transcription factor binding1.41E-02
64GO:0009672: auxin:proton symporter activity1.59E-02
65GO:0004673: protein histidine kinase activity1.77E-02
66GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen1.85E-02
67GO:0008515: sucrose transmembrane transporter activity1.96E-02
68GO:0000977: RNA polymerase II regulatory region sequence-specific DNA binding2.10E-02
69GO:0052689: carboxylic ester hydrolase activity2.12E-02
70GO:0004439: phosphatidylinositol-4,5-bisphosphate 5-phosphatase activity2.16E-02
71GO:0003677: DNA binding2.28E-02
72GO:0003697: single-stranded DNA binding2.31E-02
73GO:0031072: heat shock protein binding2.37E-02
74GO:0000155: phosphorelay sensor kinase activity2.37E-02
75GO:0003725: double-stranded RNA binding2.37E-02
76GO:0010329: auxin efflux transmembrane transporter activity2.37E-02
77GO:0004871: signal transducer activity2.56E-02
78GO:0004190: aspartic-type endopeptidase activity2.80E-02
79GO:0003712: transcription cofactor activity2.80E-02
80GO:0051119: sugar transmembrane transporter activity2.80E-02
81GO:0003714: transcription corepressor activity3.26E-02
82GO:0015293: symporter activity3.34E-02
83GO:0043424: protein histidine kinase binding3.50E-02
84GO:0004540: ribonuclease activity3.74E-02
85GO:0008810: cellulase activity4.25E-02
86GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds4.33E-02
87GO:0003777: microtubule motor activity4.43E-02
88GO:0015171: amino acid transmembrane transporter activity4.43E-02
89GO:0005102: receptor binding4.77E-02
90GO:0018024: histone-lysine N-methyltransferase activity4.77E-02
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Gene type



Gene DE type