Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT4G27240

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0070979: protein K11-linked ubiquitination0.00E+00
2GO:0071260: cellular response to mechanical stimulus0.00E+00
3GO:0043488: regulation of mRNA stability0.00E+00
4GO:0061157: mRNA destabilization0.00E+00
5GO:0019379: sulfate assimilation, phosphoadenylyl sulfate reduction by phosphoadenylyl-sulfate reductase (thioredoxin)0.00E+00
6GO:0090706: specification of plant organ position0.00E+00
7GO:0010068: protoderm histogenesis0.00E+00
8GO:0009157: deoxyribonucleoside monophosphate biosynthetic process0.00E+00
9GO:0006003: fructose 2,6-bisphosphate metabolic process0.00E+00
10GO:0007638: mechanosensory behavior0.00E+00
11GO:0015739: sialic acid transport0.00E+00
12GO:2001294: malonyl-CoA catabolic process0.00E+00
13GO:0010412: mannan metabolic process0.00E+00
14GO:0071311: cellular response to acetate0.00E+00
15GO:0015843: methylammonium transport0.00E+00
16GO:0031222: arabinan catabolic process0.00E+00
17GO:0009733: response to auxin7.25E-10
18GO:0046620: regulation of organ growth1.94E-08
19GO:0009734: auxin-activated signaling pathway3.28E-06
20GO:0040008: regulation of growth1.98E-05
21GO:0009903: chloroplast avoidance movement2.82E-05
22GO:0031022: nuclear migration along microfilament6.86E-05
23GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway1.94E-04
24GO:0010158: abaxial cell fate specification3.62E-04
25GO:0009904: chloroplast accumulation movement3.62E-04
26GO:1902183: regulation of shoot apical meristem development3.62E-04
27GO:0090351: seedling development4.67E-04
28GO:0006177: GMP biosynthetic process7.03E-04
29GO:0010450: inflorescence meristem growth7.03E-04
30GO:0051171: regulation of nitrogen compound metabolic process7.03E-04
31GO:0071028: nuclear mRNA surveillance7.03E-04
32GO:0043266: regulation of potassium ion transport7.03E-04
33GO:1902265: abscisic acid homeostasis7.03E-04
34GO:0010480: microsporocyte differentiation7.03E-04
35GO:0046520: sphingoid biosynthetic process7.03E-04
36GO:2000021: regulation of ion homeostasis7.03E-04
37GO:0006264: mitochondrial DNA replication7.03E-04
38GO:0043609: regulation of carbon utilization7.03E-04
39GO:0033259: plastid DNA replication7.03E-04
40GO:0000066: mitochondrial ornithine transport7.03E-04
41GO:0009787: regulation of abscisic acid-activated signaling pathway1.06E-03
42GO:0042255: ribosome assembly1.06E-03
43GO:0006468: protein phosphorylation1.08E-03
44GO:0006002: fructose 6-phosphate metabolic process1.28E-03
45GO:0071051: polyadenylation-dependent snoRNA 3'-end processing1.52E-03
46GO:1900871: chloroplast mRNA modification1.52E-03
47GO:0034475: U4 snRNA 3'-end processing1.52E-03
48GO:0080064: 4,4-dimethyl-9beta,19-cyclopropylsterol oxidation1.52E-03
49GO:0071497: cellular response to freezing1.52E-03
50GO:0080175: phragmoplast microtubule organization1.52E-03
51GO:0006423: cysteinyl-tRNA aminoacylation1.52E-03
52GO:0009786: regulation of asymmetric cell division1.52E-03
53GO:0031648: protein destabilization1.52E-03
54GO:0031125: rRNA 3'-end processing1.52E-03
55GO:2000024: regulation of leaf development1.54E-03
56GO:0000373: Group II intron splicing1.54E-03
57GO:0009658: chloroplast organization1.60E-03
58GO:0009926: auxin polar transport1.65E-03
59GO:0007275: multicellular organism development1.81E-03
60GO:0009638: phototropism1.83E-03
61GO:0030154: cell differentiation1.99E-03
62GO:0032502: developmental process2.13E-03
63GO:0006816: calcium ion transport2.47E-03
64GO:0016075: rRNA catabolic process2.50E-03
65GO:0034427: nuclear-transcribed mRNA catabolic process, exonucleolytic, 3'-5'2.50E-03
66GO:0051127: positive regulation of actin nucleation2.50E-03
67GO:0019419: sulfate reduction2.50E-03
68GO:0071230: cellular response to amino acid stimulus2.50E-03
69GO:0031145: anaphase-promoting complex-dependent catabolic process2.50E-03
70GO:0006000: fructose metabolic process2.50E-03
71GO:0070475: rRNA base methylation2.50E-03
72GO:0051604: protein maturation2.50E-03
73GO:0006753: nucleoside phosphate metabolic process2.50E-03
74GO:0016050: vesicle organization2.50E-03
75GO:0045165: cell fate commitment2.50E-03
76GO:2000012: regulation of auxin polar transport3.23E-03
77GO:0009767: photosynthetic electron transport chain3.23E-03
78GO:0007166: cell surface receptor signaling pathway3.40E-03
79GO:0030071: regulation of mitotic metaphase/anaphase transition3.64E-03
80GO:0051639: actin filament network formation3.64E-03
81GO:0048645: animal organ formation3.64E-03
82GO:0010255: glucose mediated signaling pathway3.64E-03
83GO:0015696: ammonium transport3.64E-03
84GO:0044211: CTP salvage3.64E-03
85GO:0046739: transport of virus in multicellular host3.64E-03
86GO:0032981: mitochondrial respiratory chain complex I assembly3.64E-03
87GO:2000904: regulation of starch metabolic process3.64E-03
88GO:0006164: purine nucleotide biosynthetic process3.64E-03
89GO:0043572: plastid fission3.64E-03
90GO:0046836: glycolipid transport3.64E-03
91GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly3.64E-03
92GO:0009067: aspartate family amino acid biosynthetic process3.64E-03
93GO:0051513: regulation of monopolar cell growth3.64E-03
94GO:0007231: osmosensory signaling pathway3.64E-03
95GO:0009740: gibberellic acid mediated signaling pathway4.10E-03
96GO:0051764: actin crosslink formation4.92E-03
97GO:0033500: carbohydrate homeostasis4.92E-03
98GO:0046355: mannan catabolic process4.92E-03
99GO:0072488: ammonium transmembrane transport4.92E-03
100GO:0022622: root system development4.92E-03
101GO:0044205: 'de novo' UMP biosynthetic process4.92E-03
102GO:0009902: chloroplast relocation4.92E-03
103GO:0044206: UMP salvage4.92E-03
104GO:0009165: nucleotide biosynthetic process4.92E-03
105GO:1901141: regulation of lignin biosynthetic process4.92E-03
106GO:0019344: cysteine biosynthetic process5.08E-03
107GO:0009944: polarity specification of adaxial/abaxial axis5.08E-03
108GO:0010187: negative regulation of seed germination5.08E-03
109GO:0051225: spindle assembly6.33E-03
110GO:0010438: cellular response to sulfur starvation6.33E-03
111GO:0032876: negative regulation of DNA endoreduplication6.33E-03
112GO:0006544: glycine metabolic process6.33E-03
113GO:0016123: xanthophyll biosynthetic process6.33E-03
114GO:2000022: regulation of jasmonic acid mediated signaling pathway6.77E-03
115GO:0006839: mitochondrial transport7.09E-03
116GO:0009959: negative gravitropism7.86E-03
117GO:0006655: phosphatidylglycerol biosynthetic process7.86E-03
118GO:0006139: nucleobase-containing compound metabolic process7.86E-03
119GO:0045962: positive regulation of development, heterochronic7.86E-03
120GO:0009117: nucleotide metabolic process7.86E-03
121GO:0009635: response to herbicide7.86E-03
122GO:0006206: pyrimidine nucleobase metabolic process7.86E-03
123GO:0018258: protein O-linked glycosylation via hydroxyproline7.86E-03
124GO:0006563: L-serine metabolic process7.86E-03
125GO:0000741: karyogamy7.86E-03
126GO:0010405: arabinogalactan protein metabolic process7.86E-03
127GO:0016310: phosphorylation8.08E-03
128GO:0010087: phloem or xylem histogenesis9.46E-03
129GO:0042372: phylloquinone biosynthetic process9.51E-03
130GO:0009082: branched-chain amino acid biosynthetic process9.51E-03
131GO:0009099: valine biosynthetic process9.51E-03
132GO:0030488: tRNA methylation9.51E-03
133GO:2000033: regulation of seed dormancy process9.51E-03
134GO:0009088: threonine biosynthetic process9.51E-03
135GO:0080086: stamen filament development9.51E-03
136GO:0009648: photoperiodism9.51E-03
137GO:0009958: positive gravitropism1.02E-02
138GO:0010182: sugar mediated signaling pathway1.02E-02
139GO:0015937: coenzyme A biosynthetic process1.13E-02
140GO:0010050: vegetative phase change1.13E-02
141GO:0048437: floral organ development1.13E-02
142GO:0030307: positive regulation of cell growth1.13E-02
143GO:0032880: regulation of protein localization1.13E-02
144GO:0010161: red light signaling pathway1.13E-02
145GO:0009610: response to symbiotic fungus1.13E-02
146GO:0048510: regulation of timing of transition from vegetative to reproductive phase1.27E-02
147GO:0010439: regulation of glucosinolate biosynthetic process1.32E-02
148GO:0009850: auxin metabolic process1.32E-02
149GO:0009690: cytokinin metabolic process1.32E-02
150GO:0010078: maintenance of root meristem identity1.32E-02
151GO:0009704: de-etiolation1.32E-02
152GO:0032875: regulation of DNA endoreduplication1.32E-02
153GO:0006353: DNA-templated transcription, termination1.32E-02
154GO:0010099: regulation of photomorphogenesis1.51E-02
155GO:0009827: plant-type cell wall modification1.51E-02
156GO:0009097: isoleucine biosynthetic process1.51E-02
157GO:0010100: negative regulation of photomorphogenesis1.51E-02
158GO:0006997: nucleus organization1.51E-02
159GO:0006526: arginine biosynthetic process1.51E-02
160GO:0010497: plasmodesmata-mediated intercellular transport1.51E-02
161GO:0043562: cellular response to nitrogen levels1.51E-02
162GO:0010093: specification of floral organ identity1.51E-02
163GO:0048367: shoot system development1.57E-02
164GO:0009416: response to light stimulus1.63E-02
165GO:0051865: protein autoubiquitination1.72E-02
166GO:0009051: pentose-phosphate shunt, oxidative branch1.72E-02
167GO:0006783: heme biosynthetic process1.72E-02
168GO:0006189: 'de novo' IMP biosynthetic process1.72E-02
169GO:0000902: cell morphogenesis1.72E-02
170GO:0015780: nucleotide-sugar transport1.72E-02
171GO:0042761: very long-chain fatty acid biosynthetic process1.94E-02
172GO:0035999: tetrahydrofolate interconversion1.94E-02
173GO:1900865: chloroplast RNA modification1.94E-02
174GO:0010380: regulation of chlorophyll biosynthetic process1.94E-02
175GO:0031425: chloroplast RNA processing1.94E-02
176GO:0010029: regulation of seed germination1.95E-02
177GO:0009742: brassinosteroid mediated signaling pathway2.06E-02
178GO:0009299: mRNA transcription2.16E-02
179GO:0010162: seed dormancy process2.16E-02
180GO:0006535: cysteine biosynthetic process from serine2.16E-02
181GO:0000103: sulfate assimilation2.16E-02
182GO:0048829: root cap development2.16E-02
183GO:0045036: protein targeting to chloroplast2.16E-02
184GO:0010411: xyloglucan metabolic process2.17E-02
185GO:0010015: root morphogenesis2.40E-02
186GO:0009089: lysine biosynthetic process via diaminopimelate2.40E-02
187GO:0009773: photosynthetic electron transport in photosystem I2.40E-02
188GO:1903507: negative regulation of nucleic acid-templated transcription2.40E-02
189GO:0009682: induced systemic resistance2.40E-02
190GO:0048229: gametophyte development2.40E-02
191GO:0006415: translational termination2.40E-02
192GO:0009684: indoleacetic acid biosynthetic process2.40E-02
193GO:0030244: cellulose biosynthetic process2.41E-02
194GO:0009723: response to ethylene2.50E-02
195GO:0000160: phosphorelay signal transduction system2.53E-02
196GO:0071555: cell wall organization2.59E-02
197GO:0016024: CDP-diacylglycerol biosynthetic process2.64E-02
198GO:0045037: protein import into chloroplast stroma2.64E-02
199GO:0010582: floral meristem determinacy2.64E-02
200GO:0048527: lateral root development2.78E-02
201GO:0030048: actin filament-based movement2.90E-02
202GO:0010588: cotyledon vascular tissue pattern formation2.90E-02
203GO:0010628: positive regulation of gene expression2.90E-02
204GO:0006006: glucose metabolic process2.90E-02
205GO:0009785: blue light signaling pathway2.90E-02
206GO:0030036: actin cytoskeleton organization2.90E-02
207GO:0010075: regulation of meristem growth2.90E-02
208GO:0009725: response to hormone2.90E-02
209GO:0009637: response to blue light3.05E-02
210GO:0048467: gynoecium development3.16E-02
211GO:0010020: chloroplast fission3.16E-02
212GO:0009933: meristem structural organization3.16E-02
213GO:0009934: regulation of meristem structural organization3.16E-02
214GO:0010030: positive regulation of seed germination3.43E-02
215GO:0070588: calcium ion transmembrane transport3.43E-02
216GO:0006631: fatty acid metabolic process3.63E-02
217GO:0006897: endocytosis3.63E-02
218GO:0010025: wax biosynthetic process3.70E-02
219GO:0009833: plant-type primary cell wall biogenesis3.70E-02
220GO:0006071: glycerol metabolic process3.70E-02
221GO:0007623: circadian rhythm3.79E-02
222GO:0009640: photomorphogenesis3.93E-02
223GO:0051017: actin filament bundle assembly3.98E-02
224GO:0007010: cytoskeleton organization3.98E-02
225GO:0005992: trehalose biosynthetic process3.98E-02
226GO:0042546: cell wall biogenesis4.09E-02
227GO:0009738: abscisic acid-activated signaling pathway4.12E-02
228GO:0008643: carbohydrate transport4.25E-02
229GO:0006418: tRNA aminoacylation for protein translation4.27E-02
230GO:0006874: cellular calcium ion homeostasis4.27E-02
231GO:0006825: copper ion transport4.27E-02
232GO:0006355: regulation of transcription, DNA-templated4.29E-02
233GO:0009739: response to gibberellin4.35E-02
234GO:0016998: cell wall macromolecule catabolic process4.57E-02
235GO:0006855: drug transmembrane transport4.58E-02
236GO:0008380: RNA splicing4.71E-02
237GO:0031347: regulation of defense response4.75E-02
238GO:0009751: response to salicylic acid4.77E-02
239GO:0035428: hexose transmembrane transport4.87E-02
240GO:0006730: one-carbon metabolic process4.87E-02
241GO:0031348: negative regulation of defense response4.87E-02
242GO:0042538: hyperosmotic salinity response4.92E-02
RankGO TermAdjusted P value
1GO:0019136: deoxynucleoside kinase activity0.00E+00
2GO:0005456: CMP-N-acetylneuraminate transmembrane transporter activity0.00E+00
3GO:0004331: fructose-2,6-bisphosphate 2-phosphatase activity0.00E+00
4GO:0003873: 6-phosphofructo-2-kinase activity0.00E+00
5GO:0015136: sialic acid transmembrane transporter activity0.00E+00
6GO:0008756: o-succinylbenzoate-CoA ligase activity0.00E+00
7GO:0015276: ligand-gated ion channel activity0.00E+00
8GO:0004639: phosphoribosylaminoimidazolesuccinocarboxamide synthase activity0.00E+00
9GO:0004056: argininosuccinate lyase activity0.00E+00
10GO:0033818: beta-ketoacyl-acyl-carrier-protein synthase III activity0.00E+00
11GO:0052907: 23S rRNA (adenine(1618)-N(6))-methyltransferase activity0.00E+00
12GO:1990534: thermospermine oxidase activity0.00E+00
13GO:0004675: transmembrane receptor protein serine/threonine kinase activity5.83E-04
14GO:0000170: sphingosine hydroxylase activity7.03E-04
15GO:0050139: nicotinate-N-glucosyltransferase activity7.03E-04
16GO:0010945: CoA pyrophosphatase activity7.03E-04
17GO:0004088: carbamoyl-phosphate synthase (glutamine-hydrolyzing) activity7.03E-04
18GO:0003984: acetolactate synthase activity7.03E-04
19GO:0052906: tRNA (guanine(37)-N(1))-methyltransferase activity7.03E-04
20GO:0008066: glutamate receptor activity7.03E-04
21GO:0005290: L-histidine transmembrane transporter activity7.03E-04
22GO:0004008: copper-exporting ATPase activity7.03E-04
23GO:0030785: [ribulose-bisphosphate carboxylase]-lysine N-methyltransferase activity7.03E-04
24GO:0033946: xyloglucan-specific endo-beta-1,4-glucanase activity7.03E-04
25GO:0010313: phytochrome binding7.03E-04
26GO:0003727: single-stranded RNA binding1.10E-03
27GO:0003938: IMP dehydrogenase activity1.52E-03
28GO:0009973: adenylyl-sulfate reductase activity1.52E-03
29GO:0080097: L-tryptophan:pyruvate aminotransferase activity1.52E-03
30GO:0004817: cysteine-tRNA ligase activity1.52E-03
31GO:0000095: S-adenosyl-L-methionine transmembrane transporter activity1.52E-03
32GO:0004604: phosphoadenylyl-sulfate reductase (thioredoxin) activity1.52E-03
33GO:0042284: sphingolipid delta-4 desaturase activity1.52E-03
34GO:0000064: L-ornithine transmembrane transporter activity1.52E-03
35GO:0050017: L-3-cyanoalanine synthase activity1.52E-03
36GO:0017118: lipoyltransferase activity1.52E-03
37GO:0043425: bHLH transcription factor binding1.52E-03
38GO:0050362: L-tryptophan:2-oxoglutarate aminotransferase activity1.52E-03
39GO:0033741: adenylyl-sulfate reductase (glutathione) activity1.52E-03
40GO:0004672: protein kinase activity1.83E-03
41GO:0043621: protein self-association1.86E-03
42GO:0016301: kinase activity2.39E-03
43GO:0005089: Rho guanyl-nucleotide exchange factor activity2.47E-03
44GO:0070330: aromatase activity2.50E-03
45GO:0004315: 3-oxoacyl-[acyl-carrier-protein] synthase activity2.50E-03
46GO:0005262: calcium channel activity3.23E-03
47GO:0004674: protein serine/threonine kinase activity3.42E-03
48GO:0015189: L-lysine transmembrane transporter activity3.64E-03
49GO:0017089: glycolipid transporter activity3.64E-03
50GO:0035529: NADH pyrophosphatase activity3.64E-03
51GO:0004072: aspartate kinase activity3.64E-03
52GO:0000254: C-4 methylsterol oxidase activity3.64E-03
53GO:0008893: guanosine-3',5'-bis(diphosphate) 3'-diphosphatase activity3.64E-03
54GO:0017172: cysteine dioxygenase activity3.64E-03
55GO:0015181: arginine transmembrane transporter activity3.64E-03
56GO:0004737: pyruvate decarboxylase activity4.92E-03
57GO:0004345: glucose-6-phosphate dehydrogenase activity4.92E-03
58GO:0008409: 5'-3' exonuclease activity4.92E-03
59GO:0051861: glycolipid binding4.92E-03
60GO:0016985: mannan endo-1,4-beta-mannosidase activity4.92E-03
61GO:0080032: methyl jasmonate esterase activity4.92E-03
62GO:0019199: transmembrane receptor protein kinase activity4.92E-03
63GO:0046556: alpha-L-arabinofuranosidase activity4.92E-03
64GO:0004845: uracil phosphoribosyltransferase activity4.92E-03
65GO:0004372: glycine hydroxymethyltransferase activity6.33E-03
66GO:0016846: carbon-sulfur lyase activity6.33E-03
67GO:0018685: alkane 1-monooxygenase activity6.33E-03
68GO:0016773: phosphotransferase activity, alcohol group as acceptor6.33E-03
69GO:0030570: pectate lyase activity7.40E-03
70GO:0004605: phosphatidate cytidylyltransferase activity7.86E-03
71GO:1990714: hydroxyproline O-galactosyltransferase activity7.86E-03
72GO:0004709: MAP kinase kinase kinase activity7.86E-03
73GO:0000210: NAD+ diphosphatase activity7.86E-03
74GO:0016208: AMP binding7.86E-03
75GO:0016462: pyrophosphatase activity7.86E-03
76GO:0008519: ammonium transmembrane transporter activity7.86E-03
77GO:0030976: thiamine pyrophosphate binding7.86E-03
78GO:2001070: starch binding7.86E-03
79GO:0005524: ATP binding8.08E-03
80GO:0004124: cysteine synthase activity9.51E-03
81GO:0008195: phosphatidate phosphatase activity9.51E-03
82GO:0004849: uridine kinase activity9.51E-03
83GO:0045156: electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity9.51E-03
84GO:0003730: mRNA 3'-UTR binding9.51E-03
85GO:0008536: Ran GTPase binding1.02E-02
86GO:0001085: RNA polymerase II transcription factor binding1.02E-02
87GO:0005338: nucleotide-sugar transmembrane transporter activity1.13E-02
88GO:0019899: enzyme binding1.13E-02
89GO:0003872: 6-phosphofructokinase activity1.13E-02
90GO:0004871: signal transducer activity1.26E-02
91GO:0016762: xyloglucan:xyloglucosyl transferase activity1.27E-02
92GO:0000156: phosphorelay response regulator activity1.44E-02
93GO:0051015: actin filament binding1.44E-02
94GO:0008173: RNA methyltransferase activity1.51E-02
95GO:0005375: copper ion transmembrane transporter activity1.51E-02
96GO:0016759: cellulose synthase activity1.54E-02
97GO:0008889: glycerophosphodiester phosphodiesterase activity1.72E-02
98GO:0003747: translation release factor activity1.72E-02
99GO:0004713: protein tyrosine kinase activity2.16E-02
100GO:0004805: trehalose-phosphatase activity2.16E-02
101GO:0016798: hydrolase activity, acting on glycosyl bonds2.17E-02
102GO:0008327: methyl-CpG binding2.40E-02
103GO:0008794: arsenate reductase (glutaredoxin) activity2.40E-02
104GO:0015238: drug transmembrane transporter activity2.53E-02
105GO:0000976: transcription regulatory region sequence-specific DNA binding2.64E-02
106GO:0001228: transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding2.78E-02
107GO:0016829: lyase activity2.80E-02
108GO:0000175: 3'-5'-exoribonuclease activity2.90E-02
109GO:0015662: ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism2.90E-02
110GO:0004089: carbonate dehydratase activity2.90E-02
111GO:0008083: growth factor activity3.16E-02
112GO:0008131: primary amine oxidase activity3.16E-02
113GO:0042973: glucan endo-1,3-beta-D-glucosidase activity3.16E-02
114GO:0004712: protein serine/threonine/tyrosine kinase activity3.33E-02
115GO:0004970: ionotropic glutamate receptor activity3.43E-02
116GO:0005217: intracellular ligand-gated ion channel activity3.43E-02
117GO:0005351: sugar:proton symporter activity3.68E-02
118GO:0003887: DNA-directed DNA polymerase activity3.70E-02
119GO:0005528: FK506 binding3.98E-02
120GO:0003714: transcription corepressor activity3.98E-02
121GO:0008017: microtubule binding4.01E-02
122GO:0051537: 2 iron, 2 sulfur cluster binding4.25E-02
123GO:0005345: purine nucleobase transmembrane transporter activity4.27E-02
124GO:0004176: ATP-dependent peptidase activity4.57E-02
125GO:0033612: receptor serine/threonine kinase binding4.57E-02
126GO:0019706: protein-cysteine S-palmitoyltransferase activity4.57E-02
127GO:0008408: 3'-5' exonuclease activity4.57E-02
128GO:0047262: polygalacturonate 4-alpha-galacturonosyltransferase activity4.87E-02
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Gene type



Gene DE type