co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT4G27180

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0097275: cellular ammonia homeostasis	0.00E+00
2	GO:0090706: specification of plant organ position	0.00E+00
3	GO:0045176: apical protein localization	0.00E+00
4	GO:2000121: regulation of removal of superoxide radicals	0.00E+00
5	GO:0051924: regulation of calcium ion transport	0.00E+00
6	GO:0007037: vacuolar phosphate transport	0.00E+00
7	GO:0031129: inductive cell-cell signaling	0.00E+00
8	GO:2001294: malonyl-CoA catabolic process	0.00E+00
9	GO:0009647: skotomorphogenesis	4.58E-05
10	GO:0006021: inositol biosynthetic process	8.11E-05
11	GO:1902183: regulation of shoot apical meristem development	1.27E-04
12	GO:0010158: abaxial cell fate specification	1.27E-04
13	GO:0045038: protein import into chloroplast thylakoid membrane	1.27E-04
14	GO:1902458: positive regulation of stomatal opening	3.63E-04
15	GO:0010450: inflorescence meristem growth	3.63E-04
16	GO:0051171: regulation of nitrogen compound metabolic process	3.63E-04
17	GO:0010362: negative regulation of anion channel activity by blue light	3.63E-04
18	GO:0010482: regulation of epidermal cell division	3.63E-04
19	GO:0031426: polycistronic mRNA processing	3.63E-04
20	GO:0071028: nuclear mRNA surveillance	3.63E-04
21	GO:0006659: phosphatidylserine biosynthetic process	3.63E-04
22	GO:0043087: regulation of GTPase activity	3.63E-04
23	GO:0007155: cell adhesion	4.01E-04
24	GO:2000024: regulation of leaf development	5.89E-04
25	GO:1900865: chloroplast RNA modification	6.94E-04
26	GO:0010155: regulation of proton transport	7.89E-04
27	GO:1903426: regulation of reactive oxygen species biosynthetic process	7.89E-04
28	GO:0015804: neutral amino acid transport	7.89E-04
29	GO:0071051: polyadenylation-dependent snoRNA 3'-end processing	7.89E-04
30	GO:0034475: U4 snRNA 3'-end processing	7.89E-04
31	GO:1905011: transmembrane phosphate ion transport from cytosol to vacuole	7.89E-04
32	GO:1900871: chloroplast mRNA modification	7.89E-04
33	GO:2000039: regulation of trichome morphogenesis	7.89E-04
34	GO:0010541: acropetal auxin transport	7.89E-04
35	GO:0007154: cell communication	7.89E-04
36	GO:0080064: 4,4-dimethyl-9beta,19-cyclopropylsterol oxidation	7.89E-04
37	GO:1900033: negative regulation of trichome patterning	7.89E-04
38	GO:0042814: monopolar cell growth	7.89E-04
39	GO:0031125: rRNA 3'-end processing	7.89E-04
40	GO:0045165: cell fate commitment	1.28E-03
41	GO:0016075: rRNA catabolic process	1.28E-03
42	GO:0034427: nuclear-transcribed mRNA catabolic process, exonucleolytic, 3'-5'	1.28E-03
43	GO:0045604: regulation of epidermal cell differentiation	1.28E-03
44	GO:0010160: formation of animal organ boundary	1.28E-03
45	GO:0080055: low-affinity nitrate transport	1.28E-03
46	GO:0006753: nucleoside phosphate metabolic process	1.28E-03
47	GO:0045493: xylan catabolic process	1.28E-03
48	GO:0010540: basipetal auxin transport	1.36E-03
49	GO:0042753: positive regulation of circadian rhythm	1.69E-03
50	GO:0006166: purine ribonucleoside salvage	1.84E-03
51	GO:0010239: chloroplast mRNA processing	1.84E-03
52	GO:0043481: anthocyanin accumulation in tissues in response to UV light	1.84E-03
53	GO:0010255: glucose mediated signaling pathway	1.84E-03
54	GO:0048530: fruit morphogenesis	1.84E-03
55	GO:0006164: purine nucleotide biosynthetic process	1.84E-03
56	GO:0009963: positive regulation of flavonoid biosynthetic process	1.84E-03
57	GO:0006168: adenine salvage	1.84E-03
58	GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly	1.84E-03
59	GO:0009944: polarity specification of adaxial/abaxial axis	1.87E-03
60	GO:0009416: response to light stimulus	2.26E-03
61	GO:0009640: photomorphogenesis	2.30E-03
62	GO:0048629: trichome patterning	2.47E-03
63	GO:0051322: anaphase	2.47E-03
64	GO:0009649: entrainment of circadian clock	2.47E-03
65	GO:0008295: spermidine biosynthetic process	2.47E-03
66	GO:0032366: intracellular sterol transport	2.47E-03
67	GO:0044209: AMP salvage	3.16E-03
68	GO:0034052: positive regulation of plant-type hypersensitive response	3.16E-03
69	GO:0006544: glycine metabolic process	3.16E-03
70	GO:0046283: anthocyanin-containing compound metabolic process	3.16E-03
71	GO:0009904: chloroplast accumulation movement	3.16E-03
72	GO:0009585: red, far-red light phototransduction	3.37E-03
73	GO:0009958: positive gravitropism	3.72E-03
74	GO:0045489: pectin biosynthetic process	3.72E-03
75	GO:0010154: fruit development	3.72E-03
76	GO:0006751: glutathione catabolic process	3.91E-03
77	GO:0048827: phyllome development	3.91E-03
78	GO:0010264: myo-inositol hexakisphosphate biosynthetic process	3.91E-03
79	GO:0060918: auxin transport	3.91E-03
80	GO:0009920: cell plate formation involved in plant-type cell wall biogenesis	3.91E-03
81	GO:0048831: regulation of shoot system development	3.91E-03
82	GO:0000741: karyogamy	3.91E-03
83	GO:0046855: inositol phosphate dephosphorylation	3.91E-03
84	GO:0006563: L-serine metabolic process	3.91E-03
85	GO:0009791: post-embryonic development	4.30E-03
86	GO:0048825: cotyledon development	4.30E-03
87	GO:0008654: phospholipid biosynthetic process	4.30E-03
88	GO:0009648: photoperiodism	4.71E-03
89	GO:0042372: phylloquinone biosynthetic process	4.71E-03
90	GO:0009082: branched-chain amino acid biosynthetic process	4.71E-03
91	GO:0048280: vesicle fusion with Golgi apparatus	4.71E-03
92	GO:0009099: valine biosynthetic process	4.71E-03
93	GO:0009903: chloroplast avoidance movement	4.71E-03
94	GO:0030488: tRNA methylation	4.71E-03
95	GO:0010189: vitamin E biosynthetic process	4.71E-03
96	GO:0009088: threonine biosynthetic process	4.71E-03
97	GO:0048444: floral organ morphogenesis	4.71E-03
98	GO:0009395: phospholipid catabolic process	5.56E-03
99	GO:0010196: nonphotochemical quenching	5.56E-03
100	GO:0015937: coenzyme A biosynthetic process	5.56E-03
101	GO:0009639: response to red or far red light	5.57E-03
102	GO:0043068: positive regulation of programmed cell death	6.46E-03
103	GO:0010078: maintenance of root meristem identity	6.46E-03
104	GO:2000070: regulation of response to water deprivation	6.46E-03
105	GO:0010093: specification of floral organ identity	7.41E-03
106	GO:0015996: chlorophyll catabolic process	7.41E-03
107	GO:0007186: G-protein coupled receptor signaling pathway	7.41E-03
108	GO:0009097: isoleucine biosynthetic process	7.41E-03
109	GO:0006997: nucleus organization	7.41E-03
110	GO:0043562: cellular response to nitrogen levels	7.41E-03
111	GO:0015995: chlorophyll biosynthetic process	7.84E-03
112	GO:0048573: photoperiodism, flowering	7.84E-03
113	GO:0010206: photosystem II repair	8.41E-03
114	GO:0048507: meristem development	8.41E-03
115	GO:0006189: 'de novo' IMP biosynthetic process	8.41E-03
116	GO:0009638: phototropism	9.46E-03
117	GO:0009098: leucine biosynthetic process	9.46E-03
118	GO:0010018: far-red light signaling pathway	9.46E-03
119	GO:0048354: mucilage biosynthetic process involved in seed coat development	9.46E-03
120	GO:0010380: regulation of chlorophyll biosynthetic process	9.46E-03
121	GO:0006811: ion transport	9.60E-03
122	GO:0048527: lateral root development	1.01E-02
123	GO:0010119: regulation of stomatal movement	1.01E-02
124	GO:0009641: shade avoidance	1.05E-02
125	GO:0010192: mucilage biosynthetic process	1.05E-02
126	GO:0006896: Golgi to vacuole transport	1.05E-02
127	GO:0006535: cysteine biosynthetic process from serine	1.05E-02
128	GO:0045036: protein targeting to chloroplast	1.05E-02
129	GO:0045490: pectin catabolic process	1.06E-02
130	GO:0009637: response to blue light	1.10E-02
131	GO:0009684: indoleacetic acid biosynthetic process	1.17E-02
132	GO:1903507: negative regulation of nucleic acid-templated transcription	1.17E-02
133	GO:0000272: polysaccharide catabolic process	1.17E-02
134	GO:0009750: response to fructose	1.17E-02
135	GO:0008361: regulation of cell size	1.29E-02
136	GO:0006790: sulfur compound metabolic process	1.29E-02
137	GO:0016024: CDP-diacylglycerol biosynthetic process	1.29E-02
138	GO:0045037: protein import into chloroplast stroma	1.29E-02
139	GO:0006631: fatty acid metabolic process	1.31E-02
140	GO:0009718: anthocyanin-containing compound biosynthetic process	1.41E-02
141	GO:0009767: photosynthetic electron transport chain	1.41E-02
142	GO:0010588: cotyledon vascular tissue pattern formation	1.41E-02
143	GO:0030048: actin filament-based movement	1.41E-02
144	GO:0009785: blue light signaling pathway	1.41E-02
145	GO:0010229: inflorescence development	1.41E-02
146	GO:0048467: gynoecium development	1.53E-02
147	GO:0010143: cutin biosynthetic process	1.53E-02
148	GO:0006541: glutamine metabolic process	1.53E-02
149	GO:0010207: photosystem II assembly	1.53E-02
150	GO:0009933: meristem structural organization	1.53E-02
151	GO:0009825: multidimensional cell growth	1.66E-02
152	GO:0019853: L-ascorbic acid biosynthetic process	1.66E-02
153	GO:0090351: seedling development	1.66E-02
154	GO:0010030: positive regulation of seed germination	1.66E-02
155	GO:0046854: phosphatidylinositol phosphorylation	1.66E-02
156	GO:0000162: tryptophan biosynthetic process	1.80E-02
157	GO:0019344: cysteine biosynthetic process	1.93E-02
158	GO:0000027: ribosomal large subunit assembly	1.93E-02
159	GO:0080147: root hair cell development	1.93E-02
160	GO:0007010: cytoskeleton organization	1.93E-02
161	GO:0010187: negative regulation of seed germination	1.93E-02
162	GO:0007017: microtubule-based process	2.07E-02
163	GO:0048511: rhythmic process	2.22E-02
164	GO:0009723: response to ethylene	2.22E-02
165	GO:0003333: amino acid transmembrane transport	2.22E-02
166	GO:0048367: shoot system development	2.36E-02
167	GO:0009814: defense response, incompatible interaction	2.37E-02
168	GO:2000022: regulation of jasmonic acid mediated signaling pathway	2.37E-02
169	GO:0035428: hexose transmembrane transport	2.37E-02
170	GO:0048443: stamen development	2.67E-02
171	GO:0010091: trichome branching	2.67E-02
172	GO:0019722: calcium-mediated signaling	2.67E-02
173	GO:0006396: RNA processing	2.83E-02
174	GO:0009789: positive regulation of abscisic acid-activated signaling pathway	2.83E-02
175	GO:0042147: retrograde transport, endosome to Golgi	2.83E-02
176	GO:0015979: photosynthesis	2.86E-02
177	GO:0009742: brassinosteroid mediated signaling pathway	2.91E-02
178	GO:0042631: cellular response to water deprivation	2.99E-02
179	GO:0000226: microtubule cytoskeleton organization	2.99E-02
180	GO:0000271: polysaccharide biosynthetic process	2.99E-02
181	GO:0080022: primary root development	2.99E-02
182	GO:0010087: phloem or xylem histogenesis	2.99E-02
183	GO:0009741: response to brassinosteroid	3.16E-02
184	GO:0008360: regulation of cell shape	3.16E-02
185	GO:0006520: cellular amino acid metabolic process	3.16E-02
186	GO:0010197: polar nucleus fusion	3.16E-02
187	GO:0010182: sugar mediated signaling pathway	3.16E-02
188	GO:0046323: glucose import	3.16E-02
189	GO:0007018: microtubule-based movement	3.32E-02
190	GO:0009851: auxin biosynthetic process	3.49E-02
191	GO:0006623: protein targeting to vacuole	3.49E-02
192	GO:0010183: pollen tube guidance	3.49E-02
193	GO:0009749: response to glucose	3.49E-02
194	GO:0048510: regulation of timing of transition from vegetative to reproductive phase	3.67E-02
195	GO:0006891: intra-Golgi vesicle-mediated transport	3.67E-02
196	GO:0010583: response to cyclopentenone	3.84E-02
197	GO:0006629: lipid metabolic process	3.94E-02
198	GO:0030163: protein catabolic process	4.02E-02
199	GO:0006464: cellular protein modification process	4.20E-02
200	GO:0007267: cell-cell signaling	4.39E-02
201	GO:0000910: cytokinesis	4.57E-02
202	GO:0007623: circadian rhythm	4.73E-02
203	GO:0016126: sterol biosynthetic process	4.76E-02
204	GO:0009911: positive regulation of flower development	4.76E-02
205	GO:0010027: thylakoid membrane organization	4.76E-02

Rank	GO Term	Adjusted P value
1	GO:0036033: mediator complex binding	0.00E+00
2	GO:0004740: pyruvate dehydrogenase (acetyl-transferring) kinase activity	0.00E+00
3	GO:0061634: alpha-D-xyloside xylohydrolase	0.00E+00
4	GO:0036361: racemase activity, acting on amino acids and derivatives	0.00E+00
5	GO:0010276: phytol kinase activity	0.00E+00
6	GO:0080176: xyloglucan 1,6-alpha-xylosidase activity	0.00E+00
7	GO:0004639: phosphoribosylaminoimidazolesuccinocarboxamide synthase activity	0.00E+00
8	GO:0016855: racemase and epimerase activity, acting on amino acids and derivatives	0.00E+00
9	GO:0008756: o-succinylbenzoate-CoA ligase activity	0.00E+00
10	GO:1990534: thermospermine oxidase activity	0.00E+00
11	GO:0000293: ferric-chelate reductase activity	1.82E-04
12	GO:0030570: pectate lyase activity	2.77E-04
13	GO:0010347: L-galactose-1-phosphate phosphatase activity	3.63E-04
14	GO:0050139: nicotinate-N-glucosyltransferase activity	3.63E-04
15	GO:0010945: CoA pyrophosphatase activity	3.63E-04
16	GO:0004795: threonine synthase activity	3.63E-04
17	GO:0019210: kinase inhibitor activity	3.63E-04
18	GO:0004328: formamidase activity	3.63E-04
19	GO:0003839: gamma-glutamylcyclotransferase activity	7.89E-04
20	GO:0050362: L-tryptophan:2-oxoglutarate aminotransferase activity	7.89E-04
21	GO:0004766: spermidine synthase activity	7.89E-04
22	GO:0052832: inositol monophosphate 3-phosphatase activity	7.89E-04
23	GO:0080097: L-tryptophan:pyruvate aminotransferase activity	7.89E-04
24	GO:0016630: protochlorophyllide reductase activity	7.89E-04
25	GO:0008934: inositol monophosphate 1-phosphatase activity	7.89E-04
26	GO:0052833: inositol monophosphate 4-phosphatase activity	7.89E-04
27	GO:0004512: inositol-3-phosphate synthase activity	7.89E-04
28	GO:0048531: beta-1,3-galactosyltransferase activity	7.89E-04
29	GO:0015172: acidic amino acid transmembrane transporter activity	7.89E-04
30	GO:0050017: L-3-cyanoalanine synthase activity	7.89E-04
31	GO:0017118: lipoyltransferase activity	7.89E-04
32	GO:0004049: anthranilate synthase activity	1.28E-03
33	GO:0080054: low-affinity nitrate transmembrane transporter activity	1.28E-03
34	GO:0003913: DNA photolyase activity	1.28E-03
35	GO:0004148: dihydrolipoyl dehydrogenase activity	1.28E-03
36	GO:0047334: diphosphate-fructose-6-phosphate 1-phosphotransferase activity	1.28E-03
37	GO:0042973: glucan endo-1,3-beta-D-glucosidase activity	1.36E-03
38	GO:0003993: acid phosphatase activity	1.76E-03
39	GO:0052655: L-valine transaminase activity	1.84E-03
40	GO:0000254: C-4 methylsterol oxidase activity	1.84E-03
41	GO:0015175: neutral amino acid transmembrane transporter activity	1.84E-03
42	GO:0048027: mRNA 5'-UTR binding	1.84E-03
43	GO:0003999: adenine phosphoribosyltransferase activity	1.84E-03
44	GO:0008893: guanosine-3',5'-bis(diphosphate) 3'-diphosphatase activity	1.84E-03
45	GO:0016811: hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides	1.84E-03
46	GO:0052656: L-isoleucine transaminase activity	1.84E-03
47	GO:0009882: blue light photoreceptor activity	1.84E-03
48	GO:0052654: L-leucine transaminase activity	1.84E-03
49	GO:0008017: microtubule binding	2.40E-03
50	GO:0080032: methyl jasmonate esterase activity	2.47E-03
51	GO:0004084: branched-chain-amino-acid transaminase activity	2.47E-03
52	GO:0009044: xylan 1,4-beta-xylosidase activity	2.47E-03
53	GO:0046556: alpha-L-arabinofuranosidase activity	2.47E-03
54	GO:0016846: carbon-sulfur lyase activity	3.16E-03
55	GO:0004372: glycine hydroxymethyltransferase activity	3.16E-03
56	GO:0042802: identical protein binding	3.22E-03
57	GO:0003777: microtubule motor activity	3.84E-03
58	GO:0004605: phosphatidate cytidylyltransferase activity	3.91E-03
59	GO:0000210: NAD+ diphosphatase activity	3.91E-03
60	GO:0016208: AMP binding	3.91E-03
61	GO:0004366: glycerol-3-phosphate O-acyltransferase activity	3.91E-03
62	GO:0102229: amylopectin maltohydrolase activity	3.91E-03
63	GO:0042578: phosphoric ester hydrolase activity	3.91E-03
64	GO:0090447: glycerol-3-phosphate 2-O-acyltransferase activity	3.91E-03
65	GO:0016788: hydrolase activity, acting on ester bonds	4.48E-03
66	GO:0004124: cysteine synthase activity	4.71E-03
67	GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity	4.71E-03
68	GO:0016161: beta-amylase activity	4.71E-03
69	GO:0009927: histidine phosphotransfer kinase activity	4.71E-03
70	GO:0004723: calcium-dependent protein serine/threonine phosphatase activity	4.71E-03
71	GO:0003872: 6-phosphofructokinase activity	5.56E-03
72	GO:0043022: ribosome binding	6.46E-03
73	GO:0008173: RNA methyltransferase activity	7.41E-03
74	GO:0016829: lyase activity	7.79E-03
75	GO:0030247: polysaccharide binding	7.84E-03
76	GO:0050897: cobalt ion binding	1.01E-02
77	GO:0047372: acylglycerol lipase activity	1.17E-02
78	GO:0000155: phosphorelay sensor kinase activity	1.41E-02
79	GO:0000175: 3'-5'-exoribonuclease activity	1.41E-02
80	GO:0010329: auxin efflux transmembrane transporter activity	1.41E-02
81	GO:0008081: phosphoric diester hydrolase activity	1.41E-02
82	GO:0003774: motor activity	1.53E-02
83	GO:0008131: primary amine oxidase activity	1.53E-02
84	GO:0035091: phosphatidylinositol binding	1.55E-02
85	GO:0008146: sulfotransferase activity	1.66E-02
86	GO:0004672: protein kinase activity	1.89E-02
87	GO:0005528: FK506 binding	1.93E-02
88	GO:0003714: transcription corepressor activity	1.93E-02
89	GO:0008408: 3'-5' exonuclease activity	2.22E-02
90	GO:0019706: protein-cysteine S-palmitoyltransferase activity	2.22E-02
91	GO:0047262: polygalacturonate 4-alpha-galacturonosyltransferase activity	2.37E-02
92	GO:0016874: ligase activity	2.59E-02
93	GO:0003824: catalytic activity	3.06E-02
94	GO:0001085: RNA polymerase II transcription factor binding	3.16E-02
95	GO:0004871: signal transducer activity	3.22E-02
96	GO:0005355: glucose transmembrane transporter activity	3.32E-02
97	GO:0010181: FMN binding	3.32E-02
98	GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	3.53E-02
99	GO:0016491: oxidoreductase activity	4.13E-02
100	GO:0016791: phosphatase activity	4.20E-02
101	GO:0016722: oxidoreductase activity, oxidizing metal ions	4.39E-02
102	GO:0046872: metal ion binding	4.82E-02