GO Enrichment Analysis of Co-expressed Genes with
AT4G25960
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0005996: monosaccharide metabolic process | 0.00E+00 |
| 2 | GO:0046471: phosphatidylglycerol metabolic process | 0.00E+00 |
| 3 | GO:0015717: triose phosphate transport | 0.00E+00 |
| 4 | GO:1902171: regulation of tocopherol cyclase activity | 0.00E+00 |
| 5 | GO:1901918: negative regulation of exoribonuclease activity | 0.00E+00 |
| 6 | GO:0055114: oxidation-reduction process | 9.58E-09 |
| 7 | GO:0015995: chlorophyll biosynthetic process | 5.12E-07 |
| 8 | GO:0009658: chloroplast organization | 1.22E-05 |
| 9 | GO:0006094: gluconeogenesis | 1.47E-05 |
| 10 | GO:0019253: reductive pentose-phosphate cycle | 1.81E-05 |
| 11 | GO:0010600: regulation of auxin biosynthetic process | 2.20E-05 |
| 12 | GO:0006546: glycine catabolic process | 2.20E-05 |
| 13 | GO:0010244: response to low fluence blue light stimulus by blue low-fluence system | 7.42E-05 |
| 14 | GO:0009772: photosynthetic electron transport in photosystem II | 9.92E-05 |
| 15 | GO:0006096: glycolytic process | 1.23E-04 |
| 16 | GO:0010928: regulation of auxin mediated signaling pathway | 1.27E-04 |
| 17 | GO:0009704: de-etiolation | 1.27E-04 |
| 18 | GO:0051180: vitamin transport | 1.69E-04 |
| 19 | GO:0030974: thiamine pyrophosphate transport | 1.69E-04 |
| 20 | GO:0046467: membrane lipid biosynthetic process | 1.69E-04 |
| 21 | GO:0071277: cellular response to calcium ion | 1.69E-04 |
| 22 | GO:0080051: cutin transport | 1.69E-04 |
| 23 | GO:0043087: regulation of GTPase activity | 1.69E-04 |
| 24 | GO:0071461: cellular response to redox state | 1.69E-04 |
| 25 | GO:0019276: UDP-N-acetylgalactosamine metabolic process | 1.69E-04 |
| 26 | GO:0046167: glycerol-3-phosphate biosynthetic process | 1.69E-04 |
| 27 | GO:0034337: RNA folding | 1.69E-04 |
| 28 | GO:0019510: S-adenosylhomocysteine catabolic process | 1.69E-04 |
| 29 | GO:0006047: UDP-N-acetylglucosamine metabolic process | 1.69E-04 |
| 30 | GO:0006098: pentose-phosphate shunt | 1.95E-04 |
| 31 | GO:0006754: ATP biosynthetic process | 1.95E-04 |
| 32 | GO:0044550: secondary metabolite biosynthetic process | 2.26E-04 |
| 33 | GO:0018119: peptidyl-cysteine S-nitrosylation | 3.19E-04 |
| 34 | GO:0015908: fatty acid transport | 3.83E-04 |
| 35 | GO:0080005: photosystem stoichiometry adjustment | 3.83E-04 |
| 36 | GO:0033353: S-adenosylmethionine cycle | 3.83E-04 |
| 37 | GO:0015893: drug transport | 3.83E-04 |
| 38 | GO:0006650: glycerophospholipid metabolic process | 3.83E-04 |
| 39 | GO:0030388: fructose 1,6-bisphosphate metabolic process | 3.83E-04 |
| 40 | GO:0010207: photosystem II assembly | 4.71E-04 |
| 41 | GO:0006636: unsaturated fatty acid biosynthetic process | 5.87E-04 |
| 42 | GO:0006000: fructose metabolic process | 6.25E-04 |
| 43 | GO:0046168: glycerol-3-phosphate catabolic process | 6.25E-04 |
| 44 | GO:0006048: UDP-N-acetylglucosamine biosynthetic process | 6.25E-04 |
| 45 | GO:0035436: triose phosphate transmembrane transport | 6.25E-04 |
| 46 | GO:0044375: regulation of peroxisome size | 6.25E-04 |
| 47 | GO:0006081: cellular aldehyde metabolic process | 6.25E-04 |
| 48 | GO:0009585: red, far-red light phototransduction | 8.42E-04 |
| 49 | GO:0006072: glycerol-3-phosphate metabolic process | 8.93E-04 |
| 50 | GO:0042823: pyridoxal phosphate biosynthetic process | 8.93E-04 |
| 51 | GO:2001141: regulation of RNA biosynthetic process | 8.93E-04 |
| 52 | GO:0015713: phosphoglycerate transport | 1.18E-03 |
| 53 | GO:0010222: stem vascular tissue pattern formation | 1.18E-03 |
| 54 | GO:0015689: molybdate ion transport | 1.18E-03 |
| 55 | GO:0019464: glycine decarboxylation via glycine cleavage system | 1.18E-03 |
| 56 | GO:0045727: positive regulation of translation | 1.18E-03 |
| 57 | GO:0015979: photosynthesis | 1.36E-03 |
| 58 | GO:0019252: starch biosynthetic process | 1.44E-03 |
| 59 | GO:0043097: pyrimidine nucleoside salvage | 1.50E-03 |
| 60 | GO:0009107: lipoate biosynthetic process | 1.50E-03 |
| 61 | GO:0016123: xanthophyll biosynthetic process | 1.50E-03 |
| 62 | GO:0009920: cell plate formation involved in plant-type cell wall biogenesis | 1.85E-03 |
| 63 | GO:0006206: pyrimidine nucleobase metabolic process | 1.85E-03 |
| 64 | GO:0010190: cytochrome b6f complex assembly | 1.85E-03 |
| 65 | GO:0006086: acetyl-CoA biosynthetic process from pyruvate | 1.85E-03 |
| 66 | GO:0009643: photosynthetic acclimation | 1.85E-03 |
| 67 | GO:0042549: photosystem II stabilization | 1.85E-03 |
| 68 | GO:0032259: methylation | 1.89E-03 |
| 69 | GO:0045926: negative regulation of growth | 2.22E-03 |
| 70 | GO:1901259: chloroplast rRNA processing | 2.22E-03 |
| 71 | GO:0010189: vitamin E biosynthetic process | 2.22E-03 |
| 72 | GO:0010019: chloroplast-nucleus signaling pathway | 2.22E-03 |
| 73 | GO:0046686: response to cadmium ion | 2.40E-03 |
| 74 | GO:1900057: positive regulation of leaf senescence | 2.61E-03 |
| 75 | GO:0010411: xyloglucan metabolic process | 2.61E-03 |
| 76 | GO:0006400: tRNA modification | 2.61E-03 |
| 77 | GO:0010161: red light signaling pathway | 2.61E-03 |
| 78 | GO:1900056: negative regulation of leaf senescence | 2.61E-03 |
| 79 | GO:0009690: cytokinin metabolic process | 3.02E-03 |
| 80 | GO:0050821: protein stabilization | 3.02E-03 |
| 81 | GO:0016559: peroxisome fission | 3.02E-03 |
| 82 | GO:0009657: plastid organization | 3.46E-03 |
| 83 | GO:0032544: plastid translation | 3.46E-03 |
| 84 | GO:0009932: cell tip growth | 3.46E-03 |
| 85 | GO:0006002: fructose 6-phosphate metabolic process | 3.46E-03 |
| 86 | GO:0071482: cellular response to light stimulus | 3.46E-03 |
| 87 | GO:0034599: cellular response to oxidative stress | 3.81E-03 |
| 88 | GO:0042742: defense response to bacterium | 3.82E-03 |
| 89 | GO:0009821: alkaloid biosynthetic process | 3.91E-03 |
| 90 | GO:0090333: regulation of stomatal closure | 3.91E-03 |
| 91 | GO:0006783: heme biosynthetic process | 3.91E-03 |
| 92 | GO:0010267: production of ta-siRNAs involved in RNA interference | 4.38E-03 |
| 93 | GO:0010380: regulation of chlorophyll biosynthetic process | 4.38E-03 |
| 94 | GO:0010205: photoinhibition | 4.38E-03 |
| 95 | GO:0006779: porphyrin-containing compound biosynthetic process | 4.38E-03 |
| 96 | GO:0010114: response to red light | 4.70E-03 |
| 97 | GO:0009744: response to sucrose | 4.70E-03 |
| 98 | GO:0006782: protoporphyrinogen IX biosynthetic process | 4.87E-03 |
| 99 | GO:0009688: abscisic acid biosynthetic process | 4.87E-03 |
| 100 | GO:0042546: cell wall biogenesis | 4.88E-03 |
| 101 | GO:0009773: photosynthetic electron transport in photosystem I | 5.38E-03 |
| 102 | GO:0019684: photosynthesis, light reaction | 5.38E-03 |
| 103 | GO:0043085: positive regulation of catalytic activity | 5.38E-03 |
| 104 | GO:0006352: DNA-templated transcription, initiation | 5.38E-03 |
| 105 | GO:0000272: polysaccharide catabolic process | 5.38E-03 |
| 106 | GO:0016485: protein processing | 5.38E-03 |
| 107 | GO:0010588: cotyledon vascular tissue pattern formation | 6.46E-03 |
| 108 | GO:0006006: glucose metabolic process | 6.46E-03 |
| 109 | GO:0018107: peptidyl-threonine phosphorylation | 6.46E-03 |
| 110 | GO:0009725: response to hormone | 6.46E-03 |
| 111 | GO:0005986: sucrose biosynthetic process | 6.46E-03 |
| 112 | GO:0009409: response to cold | 6.48E-03 |
| 113 | GO:0007031: peroxisome organization | 7.60E-03 |
| 114 | GO:0042343: indole glucosinolate metabolic process | 7.60E-03 |
| 115 | GO:0005975: carbohydrate metabolic process | 7.91E-03 |
| 116 | GO:0010025: wax biosynthetic process | 8.20E-03 |
| 117 | GO:0009833: plant-type primary cell wall biogenesis | 8.20E-03 |
| 118 | GO:0006833: water transport | 8.20E-03 |
| 119 | GO:0019762: glucosinolate catabolic process | 8.20E-03 |
| 120 | GO:0006406: mRNA export from nucleus | 8.81E-03 |
| 121 | GO:0009408: response to heat | 9.73E-03 |
| 122 | GO:0031408: oxylipin biosynthetic process | 1.01E-02 |
| 123 | GO:0098542: defense response to other organism | 1.01E-02 |
| 124 | GO:0061077: chaperone-mediated protein folding | 1.01E-02 |
| 125 | GO:0006730: one-carbon metabolic process | 1.08E-02 |
| 126 | GO:0030433: ubiquitin-dependent ERAD pathway | 1.08E-02 |
| 127 | GO:0010017: red or far-red light signaling pathway | 1.08E-02 |
| 128 | GO:0009693: ethylene biosynthetic process | 1.14E-02 |
| 129 | GO:0009058: biosynthetic process | 1.19E-02 |
| 130 | GO:0006817: phosphate ion transport | 1.21E-02 |
| 131 | GO:0019722: calcium-mediated signaling | 1.21E-02 |
| 132 | GO:0009306: protein secretion | 1.21E-02 |
| 133 | GO:0034220: ion transmembrane transport | 1.36E-02 |
| 134 | GO:0042631: cellular response to water deprivation | 1.36E-02 |
| 135 | GO:0071555: cell wall organization | 1.40E-02 |
| 136 | GO:0009737: response to abscisic acid | 1.42E-02 |
| 137 | GO:0006662: glycerol ether metabolic process | 1.43E-02 |
| 138 | GO:0010182: sugar mediated signaling pathway | 1.43E-02 |
| 139 | GO:0048868: pollen tube development | 1.43E-02 |
| 140 | GO:0009741: response to brassinosteroid | 1.43E-02 |
| 141 | GO:0015986: ATP synthesis coupled proton transport | 1.51E-02 |
| 142 | GO:0007623: circadian rhythm | 1.56E-02 |
| 143 | GO:0008654: phospholipid biosynthetic process | 1.58E-02 |
| 144 | GO:0010583: response to cyclopentenone | 1.74E-02 |
| 145 | GO:0031047: gene silencing by RNA | 1.74E-02 |
| 146 | GO:0032502: developmental process | 1.74E-02 |
| 147 | GO:0007267: cell-cell signaling | 1.99E-02 |
| 148 | GO:0009416: response to light stimulus | 2.01E-02 |
| 149 | GO:0009788: negative regulation of abscisic acid-activated signaling pathway | 2.24E-02 |
| 150 | GO:0042128: nitrate assimilation | 2.33E-02 |
| 151 | GO:0006810: transport | 2.49E-02 |
| 152 | GO:0030244: cellulose biosynthetic process | 2.61E-02 |
| 153 | GO:0006499: N-terminal protein myristoylation | 2.79E-02 |
| 154 | GO:0009910: negative regulation of flower development | 2.89E-02 |
| 155 | GO:0016051: carbohydrate biosynthetic process | 3.08E-02 |
| 156 | GO:0006839: mitochondrial transport | 3.38E-02 |
| 157 | GO:0000209: protein polyubiquitination | 3.80E-02 |
| 158 | GO:0006869: lipid transport | 3.93E-02 |
| 159 | GO:0006364: rRNA processing | 4.57E-02 |
| 160 | GO:0006397: mRNA processing | 4.60E-02 |
| 161 | GO:0006417: regulation of translation | 4.91E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0045550: geranylgeranyl reductase activity | 0.00E+00 |
| 2 | GO:0009979: 16:0 monogalactosyldiacylglycerol desaturase activity | 0.00E+00 |
| 3 | GO:0033840: NDP-glucose-starch glucosyltransferase activity | 0.00E+00 |
| 4 | GO:0050278: sedoheptulose-bisphosphatase activity | 0.00E+00 |
| 5 | GO:0008974: phosphoribulokinase activity | 0.00E+00 |
| 6 | GO:0008942: nitrite reductase [NAD(P)H] activity | 0.00E+00 |
| 7 | GO:0102193: protein-ribulosamine 3-kinase activity | 0.00E+00 |
| 8 | GO:0035798: 2-alkenal reductase (NADP+) activity | 0.00E+00 |
| 9 | GO:0009540: zeaxanthin epoxidase [overall] activity | 0.00E+00 |
| 10 | GO:0052637: delta 3-trans-hexadecenoic acid phosphatidylglycerol desaturase activity | 0.00E+00 |
| 11 | GO:0046863: ribulose-1,5-bisphosphate carboxylase/oxygenase activator activity | 0.00E+00 |
| 12 | GO:0030794: (S)-coclaurine-N-methyltransferase activity | 0.00E+00 |
| 13 | GO:0009673: low-affinity phosphate transmembrane transporter activity | 0.00E+00 |
| 14 | GO:0018708: thiol S-methyltransferase activity | 1.38E-06 |
| 15 | GO:0004565: beta-galactosidase activity | 1.47E-05 |
| 16 | GO:0004332: fructose-bisphosphate aldolase activity | 5.33E-05 |
| 17 | GO:0003977: UDP-N-acetylglucosamine diphosphorylase activity | 1.69E-04 |
| 18 | GO:0015245: fatty acid transporter activity | 1.69E-04 |
| 19 | GO:0035671: enone reductase activity | 1.69E-04 |
| 20 | GO:0052630: UDP-N-acetylgalactosamine diphosphorylase activity | 1.69E-04 |
| 21 | GO:0046906: tetrapyrrole binding | 1.69E-04 |
| 22 | GO:0090422: thiamine pyrophosphate transporter activity | 1.69E-04 |
| 23 | GO:0004013: adenosylhomocysteinase activity | 1.69E-04 |
| 24 | GO:0030234: enzyme regulator activity | 2.75E-04 |
| 25 | GO:0047100: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (phosphorylating) activity | 3.83E-04 |
| 26 | GO:0004802: transketolase activity | 3.83E-04 |
| 27 | GO:0008883: glutamyl-tRNA reductase activity | 3.83E-04 |
| 28 | GO:0010297: heteropolysaccharide binding | 3.83E-04 |
| 29 | GO:0004047: aminomethyltransferase activity | 3.83E-04 |
| 30 | GO:0042132: fructose 1,6-bisphosphate 1-phosphatase activity | 3.83E-04 |
| 31 | GO:0031072: heat shock protein binding | 4.18E-04 |
| 32 | GO:0004373: glycogen (starch) synthase activity | 6.25E-04 |
| 33 | GO:0016992: lipoate synthase activity | 6.25E-04 |
| 34 | GO:0004367: glycerol-3-phosphate dehydrogenase [NAD+] activity | 6.25E-04 |
| 35 | GO:0004030: aldehyde dehydrogenase [NAD(P)+] activity | 6.25E-04 |
| 36 | GO:0071917: triose-phosphate transmembrane transporter activity | 6.25E-04 |
| 37 | GO:0010277: chlorophyllide a oxygenase [overall] activity | 6.25E-04 |
| 38 | GO:0051287: NAD binding | 7.37E-04 |
| 39 | GO:0008168: methyltransferase activity | 7.68E-04 |
| 40 | GO:0016628: oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor | 8.93E-04 |
| 41 | GO:0016851: magnesium chelatase activity | 8.93E-04 |
| 42 | GO:0004365: glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity | 8.93E-04 |
| 43 | GO:0004375: glycine dehydrogenase (decarboxylating) activity | 8.93E-04 |
| 44 | GO:0015098: molybdate ion transmembrane transporter activity | 1.18E-03 |
| 45 | GO:0009011: starch synthase activity | 1.18E-03 |
| 46 | GO:0015120: phosphoglycerate transmembrane transporter activity | 1.18E-03 |
| 47 | GO:0001053: plastid sigma factor activity | 1.18E-03 |
| 48 | GO:0004739: pyruvate dehydrogenase (acetyl-transferring) activity | 1.18E-03 |
| 49 | GO:0016987: sigma factor activity | 1.18E-03 |
| 50 | GO:0016702: oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen | 1.50E-03 |
| 51 | GO:0016762: xyloglucan:xyloglucosyl transferase activity | 1.54E-03 |
| 52 | GO:0016709: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen | 1.65E-03 |
| 53 | GO:0004029: aldehyde dehydrogenase (NAD) activity | 1.85E-03 |
| 54 | GO:0042578: phosphoric ester hydrolase activity | 1.85E-03 |
| 55 | GO:0004849: uridine kinase activity | 2.22E-03 |
| 56 | GO:0019899: enzyme binding | 2.61E-03 |
| 57 | GO:0016798: hydrolase activity, acting on glycosyl bonds | 2.61E-03 |
| 58 | GO:0016717: oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water | 3.46E-03 |
| 59 | GO:0042802: identical protein binding | 3.51E-03 |
| 60 | GO:0005506: iron ion binding | 3.71E-03 |
| 61 | GO:0005515: protein binding | 3.90E-03 |
| 62 | GO:0071949: FAD binding | 3.91E-03 |
| 63 | GO:0008553: hydrogen-exporting ATPase activity, phosphorylative mechanism | 3.91E-03 |
| 64 | GO:0050661: NADP binding | 4.15E-03 |
| 65 | GO:0016844: strictosidine synthase activity | 4.38E-03 |
| 66 | GO:0004028: 3-chloroallyl aldehyde dehydrogenase activity | 4.38E-03 |
| 67 | GO:0051537: 2 iron, 2 sulfur cluster binding | 5.08E-03 |
| 68 | GO:0016491: oxidoreductase activity | 6.17E-03 |
| 69 | GO:0005315: inorganic phosphate transmembrane transporter activity | 6.46E-03 |
| 70 | GO:0052689: carboxylic ester hydrolase activity | 6.73E-03 |
| 71 | GO:0004672: protein kinase activity | 7.47E-03 |
| 72 | GO:0019825: oxygen binding | 8.24E-03 |
| 73 | GO:0005528: FK506 binding | 8.81E-03 |
| 74 | GO:0051082: unfolded protein binding | 9.00E-03 |
| 75 | GO:0016779: nucleotidyltransferase activity | 1.08E-02 |
| 76 | GO:0019843: rRNA binding | 1.13E-02 |
| 77 | GO:0016760: cellulose synthase (UDP-forming) activity | 1.14E-02 |
| 78 | GO:0003727: single-stranded RNA binding | 1.21E-02 |
| 79 | GO:0047134: protein-disulfide reductase activity | 1.28E-02 |
| 80 | GO:0046933: proton-transporting ATP synthase activity, rotational mechanism | 1.43E-02 |
| 81 | GO:0008080: N-acetyltransferase activity | 1.43E-02 |
| 82 | GO:0050662: coenzyme binding | 1.51E-02 |
| 83 | GO:0004791: thioredoxin-disulfide reductase activity | 1.51E-02 |
| 84 | GO:0004872: receptor activity | 1.58E-02 |
| 85 | GO:0016887: ATPase activity | 1.70E-02 |
| 86 | GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor | 1.82E-02 |
| 87 | GO:0016759: cellulose synthase activity | 1.90E-02 |
| 88 | GO:0008483: transaminase activity | 1.99E-02 |
| 89 | GO:0016722: oxidoreductase activity, oxidizing metal ions | 1.99E-02 |
| 90 | GO:0042626: ATPase activity, coupled to transmembrane movement of substances | 1.99E-02 |
| 91 | GO:0015250: water channel activity | 2.16E-02 |
| 92 | GO:0008757: S-adenosylmethionine-dependent methyltransferase activity | 2.51E-02 |
| 93 | GO:0005096: GTPase activator activity | 2.70E-02 |
| 94 | GO:0020037: heme binding | 2.77E-02 |
| 95 | GO:0003746: translation elongation factor activity | 3.08E-02 |
| 96 | GO:0042803: protein homodimerization activity | 3.76E-02 |
| 97 | GO:0004871: signal transducer activity | 3.76E-02 |
| 98 | GO:0035091: phosphatidylinositol binding | 3.91E-02 |
| 99 | GO:0043621: protein self-association | 3.91E-02 |
| 100 | GO:0015293: symporter activity | 4.01E-02 |
| 101 | GO:0003755: peptidyl-prolyl cis-trans isomerase activity | 4.12E-02 |
| 102 | GO:0003899: DNA-directed 5'-3' RNA polymerase activity | 4.57E-02 |
| 103 | GO:0003690: double-stranded DNA binding | 4.68E-02 |
| 104 | GO:0031625: ubiquitin protein ligase binding | 4.91E-02 |